Regulog Dnr - Ralstonia
| Regulator type: | Transcription factor |
| Regulator family: | CRP |
| Regulation mode: | activator |
| Biological process: | Denitrification |
| Effector: | Nitric oxide |
| Phylum: | Proteobacteria/beta |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Ralstonia
- By TF family - CRP
- By effector - Nitric oxide
- By pathway - Denitrification
| Genome | Genes | Operons |
|---|---|---|
| Ralstonia solanacearum GMI1000 | 7 | 2 |
| Ralstonia pickettii 12J | 6 | 1 |
| Ralstonia metallidurans CH34 | 11 | 2 |
| Ralstonia eutropha JMP134 | 10 | 1 |
| Ralstonia eutropha H16 | 15 | 2 |
| Cupriavidus taiwanensis | 9 | 1 |
| Genes | Function | ||||||
|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||
| nirK |
*
Ralstonia solanacearum GMI1000 Site: position = -42 score = 4.441 sequence = GTTTGCGCTGTGTCAAAG Gene: RS03038: Copper-containing nitrite reductase (NirK) |
Gene: Rpic_4015: Copper-containing nitrite reductase (NirK) |
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Copper-containing nitrite reductase (NirK) |
| CRON 2. | |||||||
| nirS |
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*
Ralstonia metallidurans CH34 Site: position = -118 score = 5.58802 sequence = CGTTGACTCGTGTCAATC Gene: Rmet_3172: Nitrite reductase NirS (Cytochrome cd1) |
*
Ralstonia eutropha JMP134 Site: position = -91 score = 5.17073 sequence = CGTTGACAACAGTCAACC Gene: Reut_B5010: Nitrite reductase NirS (Cytochrome cd1) |
*
Ralstonia eutropha H16 Site: position = -123 score = 4.61314 sequence = GTTTGATGCCAGTCAATT Gene: H16_B2277: Nitrite reductase NirS (Cytochrome cd1) |
*
Cupriavidus taiwanensis Site: position = -123 score = 4.53297 sequence = GTTTGATGACAGTCAATC Gene: RALTA_B2049: Nitrite reductase NirS (Cytochrome cd1) |
Nitrite reductase NirS (Cytochrome cd1) |
| Reut_B5011 |
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Gene: Rmet_3171: cytochrome c, class I |
Gene: Reut_B5011: cytochrome c, class I |
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cytochrome c, class I |
| nirC |
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Gene: Reut_B5012: cytochrome c, nitrite reductase associated (NirC) |
Gene: H16_B2278: cytochrome c, nitrite reductase associated (NirC) |
Gene: RALTA_B2050: cytochrome c, nitrite reductase associated (NirC) |
cytochrome c, nitrite reductase associated (NirC) |
| nirF |
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Gene: Reut_B5013: heme d1 biosynthesis protein (NirF) |
Gene: H16_B2279: heme d1 biosynthesis protein (NirF) |
Gene: RALTA_B2051: heme d1 biosynthesis protein (NirF) |
heme d1 biosynthesis protein (NirF) |
| nirD |
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Gene: Reut_B5014: heme d1 biosynthesis protein (NirD) |
Gene: H16_B2280: heme d1 biosynthesis protein (NirD) |
Gene: RALTA_B2052: heme d1 biosynthesis protein (NirD) |
heme d1 biosynthesis protein (NirD) |
| nirG |
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Gene: Reut_B5015: heme d1 biosynthesis protein (NirG) |
Gene: H16_B2281: heme d1 biosynthesis protein (NirG) |
Gene: RALTA_B2053: heme d1 biosynthesis protein (NirG) |
heme d1 biosynthesis protein (NirG) |
| nirH |
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Gene: Reut_B5016: heme d1 biosynthesis protein (NirH) |
Gene: H16_B2282: heme d1 biosynthesis protein (NirH) |
Gene: RALTA_B2054: heme d1 biosynthesis protein (NirH) |
heme d1 biosynthesis protein (NirH) |
| nirJ |
|
|
Gene: Rmet_3170: heme d1 biosynthesis protein (NirJ) |
Gene: Reut_B5017: heme d1 biosynthesis protein (NirJ) |
Gene: H16_B2283: heme d1 biosynthesis protein (NirJ) |
Gene: RALTA_B2055: heme d1 biosynthesis protein (NirJ) |
heme d1 biosynthesis protein (NirJ) |
| nirN |
|
|
Gene: Rmet_3169: C-type cytochrome (NirN) |
Gene: Reut_B5018: C-type cytochrome (NirN) |
Gene: H16_B2284: C-type cytochrome (NirN) |
Gene: RALTA_B2056: C-type cytochrome (NirN) |
C-type cytochrome (NirN) |
| nirE |
|
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Gene: Rmet_3168: Uroporphyrin-III C-methyltransferase |
Gene: Reut_B5019: Uroporphyrin-III C-methyltransferase |
Gene: H16_B2285: Uroporphyrin-III C-methyltransferase |
Gene: RALTA_B2057: Uroporphyrin-III C-methyltransferase |
Uroporphyrin-III C-methyltransferase |
| CRON 3. | |||||||
| nosZ |
*
Ralstonia solanacearum GMI1000 Site: position = -126 score = 4.68648 sequence = GTGTGACGAAAGTCAATT Gene: RSp1368: nitrous oxide reductase |
*
Ralstonia pickettii 12J Site: position = -136 score = 4.68648 sequence = GTGTGACGAAAGTCAATT Gene: Rpic_4059: nitrous oxide reductase |
*
Ralstonia metallidurans CH34 Site: position = -165 score = 5.10825 sequence = ACATGACTTATGTCAAGC Gene: Rmet_4917: nitrous oxide reductase |
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*
Ralstonia eutropha H16 Site: position = -110 score = 5.04262 sequence = TTTTGATTCGAGTCAAGT Gene: PHG252: nitrous oxide reductase |
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nitrous oxide reductase |
| nosR |
Gene: RSp1369: putative transmembrane regulatory protein nosR |
Gene: Rpic_4060: putative transmembrane regulatory protein nosR |
Gene: Rmet_4916: putative transmembrane regulatory protein nosR |
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Gene: PHG251: putative transmembrane regulatory protein nosR |
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putative transmembrane regulatory protein nosR |
| nosD |
Gene: RSp1370: putative copper binding periplasmic protein |
Gene: Rpic_4061: putative copper binding periplasmic protein |
Gene: Rmet_4915: putative copper binding periplasmic protein |
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Gene: PHG250: putative copper binding periplasmic protein |
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putative copper binding periplasmic protein |
| nosF |
Gene: RSp1371: putative copper ATP-binding ABC transporter |
Gene: Rpic_4062: putative copper ATP-binding ABC transporter |
Gene: Rmet_4914: putative copper ATP-binding ABC transporter |
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Gene: PHG249: putative copper ATP-binding ABC transporter |
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putative copper ATP-binding ABC transporter |
| nosY |
Gene: RSp1372: putative NosY transmembrane protein |
Gene: Rpic_4063: putative NosY transmembrane protein |
Gene: Rmet_4913: putative NosY transmembrane protein |
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Gene: PHG248: putative NosY transmembrane protein |
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putative NosY transmembrane protein |
| nosL |
Gene: RSp1373: NosL family protein |
Gene: Rpic_4064: NosL family protein |
Gene: Rmet_4912: NosL family protein |
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Gene: PHG247: NosL family protein |
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NosL family protein |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |