Regulog Dnr - Ralstonia

Properties
Regulator type:	Transcription factor
Regulator family:	CRP
Regulation mode:	activator
Biological process:	Denitrification
Effector:	Nitric oxide
Phylum:	Proteobacteria/beta
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 9 sites [see more]

Member of regulog collections

By taxonomy - Ralstonia
By TF family - CRP
By effector - Nitric oxide
By pathway - Denitrification

Statistics of regulated genes
Genome	Genes	Operons
Ralstonia solanacearum GMI1000	7	2
Ralstonia pickettii 12J	6	1
Ralstonia metallidurans CH34	11	2
Ralstonia eutropha JMP134	10	1
Ralstonia eutropha H16	15	2
Cupriavidus taiwanensis	9	1

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes							Function

CRON 1.
nirK	* Ralstonia solanacearum GMI1000 Site: position = -42 score = 4.441 sequence = GTTTGCGCTGTGTCAAAG Gene: RS03038: Copper-containing nitrite reductase (NirK)	Ralstonia pickettii 12J Gene: Rpic_4015: Copper-containing nitrite reductase (NirK)	Ralstonia metallidurans CH34	Ralstonia eutropha JMP134	Ralstonia eutropha H16	Cupriavidus taiwanensis	Copper-containing nitrite reductase (NirK)

CRON 2.
nirS	Ralstonia solanacearum GMI1000	Ralstonia pickettii 12J	* Ralstonia metallidurans CH34 Site: position = -118 score = 5.58802 sequence = CGTTGACTCGTGTCAATC Gene: Rmet_3172: Nitrite reductase NirS (Cytochrome cd1)	* Ralstonia eutropha JMP134 Site: position = -91 score = 5.17073 sequence = CGTTGACAACAGTCAACC Gene: Reut_B5010: Nitrite reductase NirS (Cytochrome cd1)	* Ralstonia eutropha H16 Site: position = -123 score = 4.61314 sequence = GTTTGATGCCAGTCAATT Gene: H16_B2277: Nitrite reductase NirS (Cytochrome cd1)	* Cupriavidus taiwanensis Site: position = -123 score = 4.53297 sequence = GTTTGATGACAGTCAATC Gene: RALTA_B2049: Nitrite reductase NirS (Cytochrome cd1)	Nitrite reductase NirS (Cytochrome cd1)
Reut_B5011	Ralstonia solanacearum GMI1000	Ralstonia pickettii 12J	Ralstonia metallidurans CH34 Gene: Rmet_3171: cytochrome c, class I	Ralstonia eutropha JMP134 Gene: Reut_B5011: cytochrome c, class I	Ralstonia eutropha H16	Cupriavidus taiwanensis	cytochrome c, class I
nirC	Ralstonia solanacearum GMI1000	Ralstonia pickettii 12J	Ralstonia metallidurans CH34	Ralstonia eutropha JMP134 Gene: Reut_B5012: cytochrome c, nitrite reductase associated (NirC)	Ralstonia eutropha H16 Gene: H16_B2278: cytochrome c, nitrite reductase associated (NirC)	Cupriavidus taiwanensis Gene: RALTA_B2050: cytochrome c, nitrite reductase associated (NirC)	cytochrome c, nitrite reductase associated (NirC)
nirF	Ralstonia solanacearum GMI1000	Ralstonia pickettii 12J	Ralstonia metallidurans CH34	Ralstonia eutropha JMP134 Gene: Reut_B5013: heme d1 biosynthesis protein (NirF)	Ralstonia eutropha H16 Gene: H16_B2279: heme d1 biosynthesis protein (NirF)	Cupriavidus taiwanensis Gene: RALTA_B2051: heme d1 biosynthesis protein (NirF)	heme d1 biosynthesis protein (NirF)
nirD	Ralstonia solanacearum GMI1000	Ralstonia pickettii 12J	Ralstonia metallidurans CH34	Ralstonia eutropha JMP134 Gene: Reut_B5014: heme d1 biosynthesis protein (NirD)	Ralstonia eutropha H16 Gene: H16_B2280: heme d1 biosynthesis protein (NirD)	Cupriavidus taiwanensis Gene: RALTA_B2052: heme d1 biosynthesis protein (NirD)	heme d1 biosynthesis protein (NirD)
nirG	Ralstonia solanacearum GMI1000	Ralstonia pickettii 12J	Ralstonia metallidurans CH34	Ralstonia eutropha JMP134 Gene: Reut_B5015: heme d1 biosynthesis protein (NirG)	Ralstonia eutropha H16 Gene: H16_B2281: heme d1 biosynthesis protein (NirG)	Cupriavidus taiwanensis Gene: RALTA_B2053: heme d1 biosynthesis protein (NirG)	heme d1 biosynthesis protein (NirG)
nirH	Ralstonia solanacearum GMI1000	Ralstonia pickettii 12J	Ralstonia metallidurans CH34	Ralstonia eutropha JMP134 Gene: Reut_B5016: heme d1 biosynthesis protein (NirH)	Ralstonia eutropha H16 Gene: H16_B2282: heme d1 biosynthesis protein (NirH)	Cupriavidus taiwanensis Gene: RALTA_B2054: heme d1 biosynthesis protein (NirH)	heme d1 biosynthesis protein (NirH)
nirJ	Ralstonia solanacearum GMI1000	Ralstonia pickettii 12J	Ralstonia metallidurans CH34 Gene: Rmet_3170: heme d1 biosynthesis protein (NirJ)	Ralstonia eutropha JMP134 Gene: Reut_B5017: heme d1 biosynthesis protein (NirJ)	Ralstonia eutropha H16 Gene: H16_B2283: heme d1 biosynthesis protein (NirJ)	Cupriavidus taiwanensis Gene: RALTA_B2055: heme d1 biosynthesis protein (NirJ)	heme d1 biosynthesis protein (NirJ)
nirN	Ralstonia solanacearum GMI1000	Ralstonia pickettii 12J	Ralstonia metallidurans CH34 Gene: Rmet_3169: C-type cytochrome (NirN)	Ralstonia eutropha JMP134 Gene: Reut_B5018: C-type cytochrome (NirN)	Ralstonia eutropha H16 Gene: H16_B2284: C-type cytochrome (NirN)	Cupriavidus taiwanensis Gene: RALTA_B2056: C-type cytochrome (NirN)	C-type cytochrome (NirN)
nirE	Ralstonia solanacearum GMI1000	Ralstonia pickettii 12J	Ralstonia metallidurans CH34 Gene: Rmet_3168: Uroporphyrin-III C-methyltransferase	Ralstonia eutropha JMP134 Gene: Reut_B5019: Uroporphyrin-III C-methyltransferase	Ralstonia eutropha H16 Gene: H16_B2285: Uroporphyrin-III C-methyltransferase	Cupriavidus taiwanensis Gene: RALTA_B2057: Uroporphyrin-III C-methyltransferase	Uroporphyrin-III C-methyltransferase

CRON 3.
nosZ	* Ralstonia solanacearum GMI1000 Site: position = -126 score = 4.68648 sequence = GTGTGACGAAAGTCAATT Gene: RSp1368: nitrous oxide reductase	* Ralstonia pickettii 12J Site: position = -136 score = 4.68648 sequence = GTGTGACGAAAGTCAATT Gene: Rpic_4059: nitrous oxide reductase	* Ralstonia metallidurans CH34 Site: position = -165 score = 5.10825 sequence = ACATGACTTATGTCAAGC Gene: Rmet_4917: nitrous oxide reductase	Ralstonia eutropha JMP134	* Ralstonia eutropha H16 Site: position = -110 score = 5.04262 sequence = TTTTGATTCGAGTCAAGT Gene: PHG252: nitrous oxide reductase	Cupriavidus taiwanensis	nitrous oxide reductase
nosR	Ralstonia solanacearum GMI1000 Gene: RSp1369: putative transmembrane regulatory protein nosR	Ralstonia pickettii 12J Gene: Rpic_4060: putative transmembrane regulatory protein nosR	Ralstonia metallidurans CH34 Gene: Rmet_4916: putative transmembrane regulatory protein nosR	Ralstonia eutropha JMP134	Ralstonia eutropha H16 Gene: PHG251: putative transmembrane regulatory protein nosR	Cupriavidus taiwanensis	putative transmembrane regulatory protein nosR
nosD	Ralstonia solanacearum GMI1000 Gene: RSp1370: putative copper binding periplasmic protein	Ralstonia pickettii 12J Gene: Rpic_4061: putative copper binding periplasmic protein	Ralstonia metallidurans CH34 Gene: Rmet_4915: putative copper binding periplasmic protein	Ralstonia eutropha JMP134	Ralstonia eutropha H16 Gene: PHG250: putative copper binding periplasmic protein	Cupriavidus taiwanensis	putative copper binding periplasmic protein
nosF	Ralstonia solanacearum GMI1000 Gene: RSp1371: putative copper ATP-binding ABC transporter	Ralstonia pickettii 12J Gene: Rpic_4062: putative copper ATP-binding ABC transporter	Ralstonia metallidurans CH34 Gene: Rmet_4914: putative copper ATP-binding ABC transporter	Ralstonia eutropha JMP134	Ralstonia eutropha H16 Gene: PHG249: putative copper ATP-binding ABC transporter	Cupriavidus taiwanensis	putative copper ATP-binding ABC transporter
nosY	Ralstonia solanacearum GMI1000 Gene: RSp1372: putative NosY transmembrane protein	Ralstonia pickettii 12J Gene: Rpic_4063: putative NosY transmembrane protein	Ralstonia metallidurans CH34 Gene: Rmet_4913: putative NosY transmembrane protein	Ralstonia eutropha JMP134	Ralstonia eutropha H16 Gene: PHG248: putative NosY transmembrane protein	Cupriavidus taiwanensis	putative NosY transmembrane protein
nosL	Ralstonia solanacearum GMI1000 Gene: RSp1373: NosL family protein	Ralstonia pickettii 12J Gene: Rpic_4064: NosL family protein	Ralstonia metallidurans CH34 Gene: Rmet_4912: NosL family protein	Ralstonia eutropha JMP134	Ralstonia eutropha H16 Gene: PHG247: NosL family protein	Cupriavidus taiwanensis	NosL family protein

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

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	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog Dnr - Ralstonia

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --