Regulog HexR - Ralstonia
| Regulator type: | Transcription factor |
| Regulator family: | RpiR |
| Regulation mode: | repressor (activator) |
| Biological process: | Central carbohydrate metabolism |
| Effector: | 2-keto-3-deoxy-6-phosphogluconate |
| Phylum: | Proteobacteria/beta |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Ralstonia
- By trascription factor - HexR
- By TF family - RpiR
- By effector - 2-keto-3-deoxy-6-phosphogluconate
- By pathway - Central carbohydrate metabolism
| Genome | Genes | Operons |
|---|---|---|
| Ralstonia solanacearum GMI1000 | 4 | 2 |
| Ralstonia pickettii 12J | 4 | 2 |
| Ralstonia metallidurans CH34 | 2 | 2 |
| Ralstonia eutropha JMP134 | 2 | 2 |
| Ralstonia eutropha H16 | 2 | 2 |
| Cupriavidus taiwanensis | 2 | 2 |
| Genes | Function | ||||||
|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||
| edd |
*
Ralstonia solanacearum GMI1000 Site: position = -220 score = 5.54907 sequence = TTGTAGTATTACTACAT Site: position = -42 score = 4.57763 sequence = TTGTAGGAAAATTACAT Gene: RSp1560: Phosphogluconate dehydratase (EC 4.2.1.12) |
*
Ralstonia pickettii 12J Site: position = -231 score = 5.68225 sequence = TTGTAGTATTACTACAA Site: position = -55 score = 4.17786 sequence = TTGTAGgAAAatTACAg Gene: Rpic_4868: Phosphogluconate dehydratase (EC 4.2.1.12) |
*
Ralstonia metallidurans CH34 Site: position = -209 score = 4.89238 sequence = ATGTAGAGATTCTACAC Site: position = -67 score = 5.7016 sequence = ATGTAGAAATTCTACAT Gene: Rmet_1045: Phosphogluconate dehydratase (EC 4.2.1.12) |
*
Ralstonia eutropha JMP134 Site: position = -203 score = 5.83478 sequence = ATGTAGATATTCTACAA Site: position = -62 score = 5.7016 sequence = ATGTAGAAAATCTACAT Gene: Reut_A1081: Phosphogluconate dehydratase (EC 4.2.1.12) |
*
Ralstonia eutropha H16 Site: position = -222 score = 5.21834 sequence = ATGTAGAGATTCTACAT Site: position = -71 score = 5.30184 sequence = CTGTAGAAAATCTACAT Gene: H16_A1178: Phosphogluconate dehydratase (EC 4.2.1.12) |
*
Cupriavidus taiwanensis Site: position = -223 score = 5.21834 sequence = ATGTAGAGATTCTACAT Site: position = -71 score = 4.90207 sequence = CTGTAGAAAATCTACAG Gene: RALTA_A1158: Phosphogluconate dehydratase (EC 4.2.1.12) |
Phosphogluconate dehydratase (EC 4.2.1.12) |
| CRON 2. | |||||||
| hexR |
Gene: RSp1556: Central carbohydrate metabolism transcription regulator HexR, RpiR family |
Gene: Rpic_4864: Central carbohydrate metabolism transcription regulator HexR, RpiR family |
*
Ralstonia metallidurans CH34 Site: position = -248 score = 5.7016 sequence = ATGTAGAATTTCTACAT Site: position = -106 score = 4.89238 sequence = GTGTAGAATCTCTACAT Gene: Rmet_1044: Central carbohydrate metabolism transcription regulator HexR, RpiR family |
*
Ralstonia eutropha JMP134 Site: position = -166 score = 5.7016 sequence = ATGTAGATTTTCTACAT Site: position = -25 score = 5.83478 sequence = TTGTAGAATATCTACAT Gene: Reut_A1080: Central carbohydrate metabolism transcription regulator HexR, RpiR family |
*
Ralstonia eutropha H16 Site: position = -200 score = 5.30184 sequence = ATGTAGATTTTCTACAG Site: position = -49 score = 5.21834 sequence = ATGTAGAATCTCTACAT Gene: H16_A1177: Central carbohydrate metabolism transcription regulator HexR, RpiR family |
*
Cupriavidus taiwanensis Site: position = -201 score = 4.90207 sequence = CTGTAGATTTTCTACAG Site: position = -49 score = 5.21834 sequence = ATGTAGAATCTCTACAT Gene: RALTA_A1157: Central carbohydrate metabolism transcription regulator HexR, RpiR family |
Central carbohydrate metabolism transcription regulator HexR, RpiR family |
| CRON 3. | |||||||
| zwf |
*
Ralstonia solanacearum GMI1000 Site: position = -338 score = 4.57763 sequence = ATGTAATTTTCCTACAA Site: position = -160 score = 5.54907 sequence = ATGTAGTAATACTACAA Gene: RSp1559: Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49) |
*
Ralstonia pickettii 12J Site: position = -269 score = 4.17786 sequence = CTGTAATTTTCCTACAA Site: position = -93 score = 5.68225 sequence = TTGTAGTAATACTACAA Gene: Rpic_4867: Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49) |
Gene: Rmet_5801: Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49) |
Gene: Reut_B5329: Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49) |
Gene: H16_B2566: Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49) |
Gene: RALTA_B2296: Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49) |
Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49) |
| pgl |
Gene: RSp1558: 6-phosphogluconolactonase (EC 3.1.1.31), eukaryotic type |
Gene: Rpic_4866: 6-phosphogluconolactonase (EC 3.1.1.31), eukaryotic type |
Gene: Rmet_5800: 6-phosphogluconolactonase (EC 3.1.1.31), eukaryotic type |
Gene: Reut_B5328: 6-phosphogluconolactonase (EC 3.1.1.31), eukaryotic type |
Gene: H16_B2565: 6-phosphogluconolactonase (EC 3.1.1.31), eukaryotic type |
Gene: RALTA_B2295: 6-phosphogluconolactonase (EC 3.1.1.31), eukaryotic type |
6-phosphogluconolactonase (EC 3.1.1.31), eukaryotic type |
| glk |
Gene: RSp1557: Glucokinase (EC 2.7.1.2) |
Gene: Rpic_4865: Glucokinase (EC 2.7.1.2) |
Gene: Rmet_5799: Glucokinase (EC 2.7.1.2) |
Gene: Reut_B5327: Glucokinase (EC 2.7.1.2) |
Gene: H16_B2564: Glucokinase (EC 2.7.1.2) |
Gene: RALTA_B2294: Glucokinase (EC 2.7.1.2) |
Glucokinase (EC 2.7.1.2) |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |