Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of ArgR regulog to Shewanella piezotolerans WP3

Reference regulog properties
Source regulog: ArgR - Shewanellaceae
Regulator type: Transcription factor
Regulator family: ArgR
Regulation mode: repressor (activator)
Biological process: Arginine degradation; Arginine biosynthesis
Effector: Arginine
Phylum: Proteobacteria/gamma
Propagated regulon:
Target genome Shewanella piezotolerans WP3
Orthologous TF(s) swp_4101
Regulated genes 22
Built upon 502 sites [see more]
Predicted regulatory interactions in Shewanella piezotolerans WP3
Locus tag Position Score Sequence
Position: -189
Score: 4.2
Sequence: CGTGATTATTAAATCACA
Locus tag: swp_0359
swp_0359 -189 4.2 CGTGATTATTAAATCACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ilvG
Ortholog function: Acetolactate synthase large subunit (EC 2.2.1.6)
Shewanella oneidensis MR-1 SO_4347 -216 4.2 CGTGATTATTAAATCACA
Shewanella putrefaciens CN-32 Sputcn32_3614 -214 4.2 CGTGATTATTAAATCACA
Shewanella sp W3-18-1 Sputw3181_3754 -214 4.2 CGTGATTATTAAATCACA
Shewanella sp ANA-3 Shewana3_0356 -201 4.5 AGTGATTATTAAATCACA
Shewanella sp MR-4 Shewmr4_0362 -201 4.5 AGTGATTATTAAATCACA
Shewanella sp MR-7 Shewmr7_3664 -219 4.5 AGTGATTATTAAATCACA
Shewanella denitrificans OS217 Sden_3414 -153 4.6 AGTGATTATTAAGTCACA
Shewanella frigidimarina NCIMB 400 Sfri_0422 -202 4.6 AGTGATTATTAAGTCACA
Shewanella amazonensis SB2B Sama_3281 -157 4.5 AGTGATTATTAAATCACA
Shewanella loihica PV-4 Shew_0289 -166 4.5 AGTGATTATTAAATCACA
Shewanella pealeana ATCC 700345 Spea_0345 -181 4.2 CGTGATTATTAAATCACA
Shewanella halifaxensis HAW-EB4 Shal_3944 -193 4.2 CGTGATTATTAAATCACA
Shewanella piezotolerans WP3 swp_0359 -189 4.2 CGTGATTATTAAATCACA
Shewanella woodyi ATCC 51908 Swoo_0442 -190 4.2 CGTGATTATTAAATCACA
Position: -244
Score: 4
Sequence: TATGACTAAATATGCTTA
Locus tag: swp_0747
swp_0747 -244 4 TATGACTAAATATGCTTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: astC
Ortholog function: Acetylornithine aminotransferase (EC 2.6.1.11) / N-succinyl-L,L-diaminopimelate aminotransferase (EC 2.6.1.17) / Succinylornithine transaminase (EC 2.6.1.81)
Shewanella oneidensis MR-1 SO_0617 -307 4.1 ATTGTGTAGTTATTCATA
-247 4 TCTGACTAAATATGCTAA
Shewanella putrefaciens CN-32 Sputcn32_0645 -307 4.1 ATTGTGTAGTTATTCATA
-247 4 TCTGACTAAATATGCTAC
Shewanella sp W3-18-1 Sputw3181_3529 -307 4.1 ATTGTGTAGTTATTCATA
-247 4 TCTGACTAAATATGCTAC
Shewanella sp ANA-3 Shewana3_0610 -307 4.1 ATTGTGTAGTTATTCATA
-247 4 TCTGACTAAATATGCTAA
Shewanella sp MR-4 Shewmr4_0611 -307 4.1 ATTGTGTAGTTATTCATA
-247 4 TCTGACTAAATATGCTAA
Shewanella sp MR-7 Shewmr7_3419 -307 4.1 ATTGTGTAGTTATTCATA
-247 4 TCTGACTAAATATGCTAA
Shewanella baltica OS155 Sbal_0571 -247 3.9 TATGACTAATTATGCTGA
Shewanella denitrificans OS217 Sden_3193 -300 4.4 TATGGCTATTTATTCACT
-188 4.8 ATTCAATTTATATGCAGA
Shewanella frigidimarina NCIMB 400 Sfri_3299 -301 4.4 TATGTGTAATTATTCACT
-241 3.9 TATGACTATTTATGCTTC
-189 4 TATCAATCTTTATGCAGA
Shewanella amazonensis SB2B Sama_3011 -308 3.8 TATGTCTATTTATCCAAT
-247 4.2 TCTGACTAAATATGCCAT
Shewanella loihica PV-4 Shew_0578 -304 5 TGTGACTATATATTCATA
-244 4 TCTGACTATTTATGCTCA
Shewanella pealeana ATCC 700345 Spea_3516 -281 3.7 CGTGAATAACTAGTAATT
-242 4 TGTGACTATTTATGCTTA
Shewanella halifaxensis HAW-EB4 Shal_3610 -242 4 TATGACTATTTATGCTTA
Shewanella piezotolerans WP3 swp_0747 -244 4 TATGACTAAATATGCTTA
Shewanella sediminis HAW-EB3 Ssed_0809 -246 3.9 TATGACTAATTATGCTTA
Shewanella woodyi ATCC 51908 Swoo_0655 -245 4.2 TATGACTAAATATGCTCT
Position: -56
Score: 3.8
Sequence: ATTGGCTTATTAAGCACT
Locus tag: swp_0748
swp_0748 -56 3.8 ATTGGCTTATTAAGCACT
Supported by regulated orthologs from reference regulons
Ortholog gene name: astA
Ortholog function: Arginine N-succinyltransferase (EC 2.3.1.109)
Shewanella oneidensis MR-1 SO_0618 -307 4.1 ATTGTGTAGTTATTCATA
-247 4 TCTGACTAAATATGCTAA
Shewanella putrefaciens CN-32 Sputcn32_0646 -307 4.1 ATTGTGTAGTTATTCATA
-247 4 TCTGACTAAATATGCTAC
Shewanella sp W3-18-1 Sputw3181_3528 -307 4.1 ATTGTGTAGTTATTCATA
-247 4 TCTGACTAAATATGCTAC
Shewanella sp ANA-3 Shewana3_0611 -307 4.1 ATTGTGTAGTTATTCATA
-247 4 TCTGACTAAATATGCTAA
Shewanella sp MR-4 Shewmr4_0612 -307 4.1 ATTGTGTAGTTATTCATA
-247 4 TCTGACTAAATATGCTAA
Shewanella sp MR-7 Shewmr7_3418 -307 4.1 ATTGTGTAGTTATTCATA
-247 4 TCTGACTAAATATGCTAA
Shewanella baltica OS155 Sbal_0572 -247 3.9 TATGACTAATTATGCTGA
Shewanella denitrificans OS217 Sden_3192 -300 4.4 TATGGCTATTTATTCACT
-188 4.8 ATTCAATTTATATGCAGA
Shewanella frigidimarina NCIMB 400 Sfri_3298 -301 4.4 TATGTGTAATTATTCACT
-241 3.9 TATGACTATTTATGCTTC
-189 4 TATCAATCTTTATGCAGA
Shewanella amazonensis SB2B Sama_3010 -308 3.8 TATGTCTATTTATCCAAT
-247 4.2 TCTGACTAAATATGCCAT
Shewanella loihica PV-4 Shew_0579 -304 5 TGTGACTATATATTCATA
-244 4 TCTGACTATTTATGCTCA
Shewanella pealeana ATCC 700345 Spea_3515 -281 3.7 CGTGAATAACTAGTAATT
-242 4 TGTGACTATTTATGCTTA
Shewanella halifaxensis HAW-EB4 Shal_3609 -242 4 TATGACTATTTATGCTTA
Shewanella piezotolerans WP3 swp_0748 -244 4 TATGACTAAATATGCTTA
Shewanella sediminis HAW-EB3 Ssed_0810 -246 3.9 TATGACTAATTATGCTTA
Shewanella woodyi ATCC 51908 Swoo_0656 -245 4.2 TATGACTAAATATGCTCT
Position: 12
Score: 4
Sequence: ATTGAAGGTAAATGGACA
Locus tag: swp_0749
swp_0749 12 4 ATTGAAGGTAAATGGACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: astD
Ortholog function: Succinylglutamic semialdehyde dehydrogenase (EC 1.2.1.71)
Shewanella oneidensis MR-1 SO_0619 -307 4.1 ATTGTGTAGTTATTCATA
-247 4 TCTGACTAAATATGCTAA
Shewanella putrefaciens CN-32 Sputcn32_0647 -307 4.1 ATTGTGTAGTTATTCATA
-247 4 TCTGACTAAATATGCTAC
Shewanella sp W3-18-1 Sputw3181_3527 -307 4.1 ATTGTGTAGTTATTCATA
-247 4 TCTGACTAAATATGCTAC
Shewanella sp ANA-3 Shewana3_0612 -307 4.1 ATTGTGTAGTTATTCATA
-247 4 TCTGACTAAATATGCTAA
Shewanella sp MR-4 Shewmr4_0613 -307 4.1 ATTGTGTAGTTATTCATA
-247 4 TCTGACTAAATATGCTAA
Shewanella sp MR-7 Shewmr7_3417 -307 4.1 ATTGTGTAGTTATTCATA
-247 4 TCTGACTAAATATGCTAA
Shewanella baltica OS155 Sbal_0573 -247 3.9 TATGACTAATTATGCTGA
Shewanella denitrificans OS217 Sden_3191 -300 4.4 TATGGCTATTTATTCACT
-188 4.8 ATTCAATTTATATGCAGA
Shewanella frigidimarina NCIMB 400 Sfri_3297 -301 4.4 TATGTGTAATTATTCACT
-241 3.9 TATGACTATTTATGCTTC
-189 4 TATCAATCTTTATGCAGA
Shewanella amazonensis SB2B Sama_3009 -308 3.8 TATGTCTATTTATCCAAT
-247 4.2 TCTGACTAAATATGCCAT
Shewanella loihica PV-4 Shew_0580 -304 5 TGTGACTATATATTCATA
-244 4 TCTGACTATTTATGCTCA
Shewanella pealeana ATCC 700345 Spea_3514 -281 3.7 CGTGAATAACTAGTAATT
-242 4 TGTGACTATTTATGCTTA
Shewanella halifaxensis HAW-EB4 Shal_3608 -242 4 TATGACTATTTATGCTTA
Shewanella piezotolerans WP3 swp_0749 -244 4 TATGACTAAATATGCTTA
Shewanella sediminis HAW-EB3 Ssed_0811 -246 3.9 TATGACTAATTATGCTTA
Shewanella woodyi ATCC 51908 Swoo_0657 -245 4.2 TATGACTAAATATGCTCT
Position: -90
Score: 5.2
Sequence: GTTGAATGAATATTCAAT
Locus tag: swp_1256
swp_1256 -90 5.2 GTTGAATGAATATTCAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: argW
Ortholog function: Predicted arginine uptake transporter, COG3314 family
Shewanella oneidensis MR-1 SO_1245 -99 4.8 GTTGAATGAAAATGCAGC
Shewanella putrefaciens CN-32 Sputcn32_2808 -124 4.9 GTTGAATGAAAATGCACC
Shewanella sp W3-18-1 Sputw3181_1204 -124 4.9 GTTGAATGAAAATGCACC
Shewanella sp ANA-3 Shewana3_1062 -99 4.9 GTTGAATGAAAATGCACC
Shewanella sp MR-4 Shewmr4_1058 -98 4.8 GTTGAATGAAAATGCATC
Shewanella sp MR-7 Shewmr7_1129 -98 4.8 GTTGAATGAAAATGCATC
Shewanella baltica OS155 Sbal_3205 -99 5.2 GTTGAATTTAAATGCACC
Shewanella denitrificans OS217 Sden_1037 -98 4.1 ACTCTATTTTTATGCAGC
Shewanella frigidimarina NCIMB 400 Sfri_1012 -88 4.8 ACTGAATGGACATTCAAT
Shewanella amazonensis SB2B Sama_0994 -102 4.2 CCTGCATGGACATGCACT
Shewanella loihica PV-4 Shew_2790 -90 4.5 CATGAATGGATATTCAGA
Shewanella pealeana ATCC 700345 Spea_3024 -93 4.9 GTTGAATGGATATTCAAT
Shewanella halifaxensis HAW-EB4 Shal_3114 -91 4.9 GTTGAATGGATATTCAAT
Shewanella piezotolerans WP3 swp_1256 -90 5.2 GTTGAATGAATATTCAAT
Shewanella sediminis HAW-EB3 Ssed_3353 -58 4.8 TTTGAATGGATATTCATA
Shewanella woodyi ATCC 51908 Swoo_3520 -89 4.6 CATGAATGGATATTCAGT
Position: -136
Score: 4.4
Sequence: TGTGAATAAATAGTGATT
Locus tag: swp_1378
swp_1378 -136 4.4 TGTGAATAAATAGTGATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: oadG
Ortholog function: Oxaloacetate decarboxylase gamma chain (EC 4.1.1.3)
Shewanella putrefaciens CN-32 Sputcn32_1029 -265 4.3 TATCCTTATAAATTCACT
-154 4.3 TGTGAATATTTAGTCTTT
-133 4 TGTGATTTTATATGCTGC
Shewanella sp W3-18-1 Sputw3181_3136 -265 4.3 TATCCTTATAAATTCACT
-154 4.3 TGTGAATATTTAGTCTTT
-133 4 TGTGATTTTATATGCTGC
Shewanella sp MR-7 Shewmr7_3069 -322 3.9 ATTCAATTTAAAGGCCAT
-176 3.7 AACGAATGTTCATTTAAT
Shewanella baltica OS155 Sbal_1024 -139 4.9 TGTGATTTTTTATTCAAA
Shewanella frigidimarina NCIMB 400 Sfri_1065 -182 3.8 GTTGAATAATCGTTGAGT
-165 4.6 TTTGAATATTTATGCTTT
Shewanella amazonensis SB2B Sama_1051 -352 4.1 ACTGCATATACTTCCACT
-307 3.6 TCTGCCCATGAATGCAGT
Shewanella loihica PV-4 Shew_1219 -377 4.3 ATTGCATAATCTTGCATA
-331 4 ATTCAATTTTCAAGCAGA
Shewanella pealeana ATCC 700345 Spea_1198 -73 4.2 TGTGAATGAATAGTGAAT
-62 4.1 AGTGAATATTTATTTTTA
Shewanella halifaxensis HAW-EB4 Shal_1235 -63 4.8 GGTGAATATTTATTGAGT
-43 4.1 CATCCATGTTTATTCACA
Shewanella piezotolerans WP3 swp_1378 -157 3.6 TATCAACAGAAATGCATA
-136 4.4 TGTGAATAAATAGTGATT
Shewanella sediminis HAW-EB3 Ssed_1320 -322 4.4 ACTGCATAACTTTTCATT
Shewanella woodyi ATCC 51908 Swoo_3337 -110 4.4 AATGAATAAAAAGTTATT
Position: -167
Score: 4
Sequence: ATTTCATTATTAGTCATC
Position: -135
Score: 4.6
Sequence: TGTGCATTTTGATGCAAA
Locus tag: swp_1743
swp_1743 -167 4 ATTTCATTATTAGTCATC
-135 4.6 TGTGCATTTTGATGCAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: astB
Ortholog function: Succinylarginine dihydrolase (EC 3.5.3.23)
Shewanella oneidensis MR-1 SO_2706 -227 4 AGTCACTTTTTAATCAAA
-142 3.6 AAGAAATAGTTATGCATT
-40 4.1 TTTGAATAAATAATAACC
Shewanella putrefaciens CN-32 Sputcn32_2251 -225 4 AGTCACTTTTTAATCAAA
-131 4.2 TATGCATTTATCGTCAAA
Shewanella sp W3-18-1 Sputw3181_1757 -225 4 AGTCACTTTTTAATCAAA
-131 4.2 TATGCATTTATCGTCAAA
Shewanella sp ANA-3 Shewana3_1728 -227 4 AGTCACTTTTTAATCAAA
-132 3.6 TATGCATTTATCGTGAAA
-40 4.1 TTTGAATAAATAATAACC
Shewanella sp MR-4 Shewmr4_1584 -227 4 AGTCACTTTTTAATCAAA
-142 3.6 AAGAAATAGTTATGCATT
Shewanella sp MR-7 Shewmr7_1659 -227 4 AGTCACTTTTTAATCAAA
-142 3.6 AAGAAATAGTTATGCATT
Shewanella baltica OS155 Sbal_2497 -226 4 AGTCACTTTTTAATCAAA
-132 3.6 TATGCATTTATCGTGAAA
-40 3.6 TATGAACAAATAATAACT
Shewanella denitrificans OS217 Sden_2329 -201 4.7 CTTGCATTTTTAATCACT
Shewanella frigidimarina NCIMB 400 Sfri_2479 -186 5 AGTGCATTTTTAGTCATT
Shewanella amazonensis SB2B Sama_1321 -233 4.1 AGTCACTTTTTAATCAAT
-147 3.6 AAGCAATAGTTATGCAAA
Shewanella pealeana ATCC 700345 Spea_1534 -137 5 TGTGCATTTCAATTCAAA
Shewanella halifaxensis HAW-EB4 Shal_1604 -169 4.1 ATTTCATTAATAGTCATC
-137 4.6 TGTGCATTTTGATGCAAA
Shewanella piezotolerans WP3 swp_1743 -167 4 ATTTCATTATTAGTCATC
-135 4.6 TGTGCATTTTGATGCAAA
Shewanella sediminis HAW-EB3 Ssed_2842 -354 4 ATTTCATTATTAGTCATC
-322 4.3 TGTGCATTTCGATGCAAA
Shewanella woodyi ATCC 51908 Swoo_1802 -236 4 ATTTCATTATTAGTCATC
-204 5 TGTGAATTTCAATGCAAA
Position: -27
Score: 4.5
Sequence: TTTGAATATATATTTAGG
Locus tag: swp_2054
swp_2054 -27 4.5 TTTGAATATATATTTAGG
Supported by regulated orthologs from reference regulons
Ortholog gene name: argE
Ortholog function: Acetylornithine deacetylase (EC 3.5.1.16)
Shewanella amazonensis SB2B Sama_0255 -50 3.7 ACTCTTTAATTATGCAAT
Shewanella loihica PV-4 Shew_0201 -53 4.2 TATGCAATAATATTGAAT
Shewanella pealeana ATCC 700345 Spea_0226 -27 3.8 TTTGAATATATATTTGGG
Shewanella halifaxensis HAW-EB4 Shal_4094 -122 3.8 ATTGAACATATATACTCT
-26 4.5 TTTGAATATATATTTAGG
Shewanella piezotolerans WP3 swp_2054 -143 3.4 AATACTTAATAATTGAAC
-27 4.5 TTTGAATATATATTTAGG
Shewanella sediminis HAW-EB3 Ssed_4277 -48 3.5 ACAAACTAATTATGCAAT
-27 4 TTTGAATATATATTTTAC
Shewanella woodyi ATCC 51908 Swoo_0328 -28 4 TTTGAATATATATTTTAC
Position: -266
Score: 4.5
Sequence: CCTAAATATATATTCAAA
Locus tag: swp_2055
swp_2055 -266 4.5 CCTAAATATATATTCAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: argC
Ortholog function: N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38)
Shewanella oneidensis MR-1 SO_0275 -327 3.6 ATTGAAATATTAAGTAGT
-249 4 TAAAAATATATATTCACA
-127 3.7 AGTGAATAAAATAACAAG
Shewanella putrefaciens CN-32 Sputcn32_3717 -192 4.2 TATGAAAATAAATTAAAA
-57 3.8 AGTGAATAAAATAACAAC
Shewanella sp W3-18-1 Sputw3181_3860 -193 4.2 TATGAAAATAAATTAAAA
-180 4 TAAAAATATATATTCACA
-57 4 AGTGAATAAAATAACAAT
Shewanella sp ANA-3 Shewana3_3905 -357 3.7 ACTGATTTTTCAGTCTTT
-327 4.4 ACTGAGTTATTAAGCAGT
-249 4 TAAAAATATATATTCACA
Shewanella sp MR-4 Shewmr4_3709 -327 4.4 ACTGAGTTATTAAGCAGT
-249 4 TAAAAATATATATTCACA
Shewanella sp MR-7 Shewmr7_0236 -327 4.4 ACTGAGTTATTAAGCAGT
-249 4 TAAAAATATATATTCACA
Shewanella baltica OS155 Sbal_4124 -471 4.2 ATTCAATATAAATGCGAA
-252 4 TAAAAATATATATTCACA
-130 3.8 AGTGAATAAAATAACAAC
Shewanella denitrificans OS217 Sden_0250 -235 4.3 AATAAATATGTATTCACA
-214 3.7 ATTGCATAACAATTTGAT
-145 4.3 ATCGAATATAAAAGCACA
Shewanella amazonensis SB2B Sama_0256 -241 3.7 AATAGATATTCATGCATA
Shewanella loihica PV-4 Shew_0202 -249 3.7 TAAAAATATCTATTCAAT
-228 3.5 ATTGCATAATTAGTTTGT
Shewanella pealeana ATCC 700345 Spea_0227 -266 3.8 CCCAAATATATATTCAAA
Shewanella halifaxensis HAW-EB4 Shal_4093 -267 4.5 CCTAAATATATATTCAAA
Shewanella piezotolerans WP3 swp_2055 -266 4.5 CCTAAATATATATTCAAA
Shewanella sediminis HAW-EB3 Ssed_4276 -256 4 GTAAAATATATATTCAAA
-235 3.5 ATTGCATAATTAGTTTGT
Shewanella woodyi ATCC 51908 Swoo_0329 -423 3.5 TTTGCATTCAAAACCAAG
-263 4 GTAAAATATATATTCAAA
Position: -104
Score: 5
Sequence: TGTGAATACTTATTCACT
Locus tag: swp_2592
swp_2592 -104 5 TGTGAATACTTATTCACT
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO2306
Ortholog function: Cell division protein FtsK
Shewanella pealeana ATCC 700345 Spea_2233 -104 5.4 GGTGAATAAATATTCAGT
Shewanella halifaxensis HAW-EB4 Shal_2217 -103 4.9 TATGCATAACTATTCAGT
Shewanella piezotolerans WP3 swp_2592 -104 5 TGTGAATACTTATTCACT
Position: -292
Score: 4.4
Sequence: GATTAATTTAAATGCATC
Locus tag: swp_3001
swp_3001 -292 4.4 GATTAATTTAAATGCATC
Supported by regulated orthologs from reference regulons
Ortholog gene name: hisG
Ortholog function: ATP phosphoribosyltransferase (EC 2.4.2.17)
Shewanella frigidimarina NCIMB 400 Sfri_1720 -268 4.2 AGTGCATAAATCCTCATT
-114 4.1 GGTGAACACTTATTCACA
Shewanella amazonensis SB2B Sama_1941 -352 5 TATGAATATTCATGCAAA
Shewanella piezotolerans WP3 swp_3001 -292 4.4 GATTAATTTAAATGCATC
Shewanella woodyi ATCC 51908 Swoo_2092 -317 4.7 ATTGATTAGATATTCATA
Position: -331
Score: 4.3
Sequence: AGTGACTATCATTTCACT
Position: -310
Score: 4.3
Sequence: TTTGCAATAAAAATCACT
Locus tag: swp_3803
swp_3803 -331 4.3 AGTGACTATCATTTCACT
-310 4.3 TTTGCAATAAAAATCACT
Supported by regulated orthologs from reference regulons
Ortholog gene name: gltB
Ortholog function: Glutamate synthase [NADPH] large chain (EC 1.4.1.13)
Shewanella oneidensis MR-1 SO_1325 -359 4.5 AAAGAATAACAATTCACT
-313 4.3 TTTGCAATAAAAATCACT
Shewanella putrefaciens CN-32 Sputcn32_1136 -358 4.7 GAAGAATAAAAATTCACT
-312 4.3 TTTGCAATAAAAATCACT
Shewanella sp W3-18-1 Sputw3181_3028 -358 4.8 GGAGAATAAAAATTCACT
-312 4.3 TTTGCAATAAAAATCACT
Shewanella sp ANA-3 Shewana3_3050 -360 4.5 ATAGAATAACAATTCATT
-339 4 TATAAATTTTTATACATC
-314 4.3 TTTGCAATAAAAATCACT
Shewanella sp MR-4 Shewmr4_2872 -359 4.5 AAAGAATAACAATTCACT
-313 4.3 TTTGCAATAAAAATCACT
Shewanella sp MR-7 Shewmr7_2954 -359 4.5 AAAGAATAACAATTCACT
-313 4.3 TTTGCAATAAAAATCACT
Shewanella baltica OS155 Sbal_1178 -361 5.3 AATGAATAATAATTCAAC
-315 4.3 TTTGCAATAAAAATCACT
Shewanella denitrificans OS217 Sden_2790 -359 5.1 AGTGAATATTTAGTCAGT
Shewanella frigidimarina NCIMB 400 Sfri_2951 -358 5 AATGAATATTTAATCATT
-312 4.3 TTTAAAATAAAATTCACT
Shewanella amazonensis SB2B Sama_0857 -362 4.6 TTTGAATAGTTAATCAAT
-316 4 CCTGCAAAAAAAATCACT
Shewanella loihica PV-4 Shew_1032 -324 3.8 TTTGTTAAATAATTCACT
-303 4.3 TATGCAATAAAAATCACT
Shewanella pealeana ATCC 700345 Spea_1013 -354 4.9 AATGCATAAATAGTCACA
-330 4.3 AGTGATTATCATTTCACT
-309 4.3 TCTGCAAAAAAAATCACT
Shewanella halifaxensis HAW-EB4 Shal_1061 -355 4.6 TATGCATAAATAAGCAAA
-331 3.8 AGTGACTACCATTTCACT
-310 4 TCTGCAAGAAAAATCACT
Shewanella piezotolerans WP3 swp_3803 -355 4.4 TCTGCATAATTAGTCAAG
-331 4.3 AGTGACTATCATTTCACT
-310 4.3 TTTGCAATAAAAATCACT
Shewanella sediminis HAW-EB3 Ssed_1126 -301 4.1 CGTGCAAAAAAAATCACT
-127 4.3 ACTCAAATTTTATGCAAT
-62 3.8 GGTGAATATCTATACTAA
Shewanella woodyi ATCC 51908 Swoo_1221 -349 4.7 ACTGCATAAATAAGCAAA
-314 3.9 ATTCATTATATTTGCAAT
Position: -151
Score: 4.5
Sequence: TATAAATATAAATGCACC
Locus tag: swp_3957
swp_3957 -151 4.5 TATAAATATAAATGCACC
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO0762
Ortholog function: Isochorismate hydrolase (EC 3.3.2.1)
Shewanella oneidensis MR-1 SO_0762 -195 4.6 TGTGCCTAAAAATGCACC
Shewanella sp ANA-3 Shewana3_3533 -234 3.9 ATTGATTTTAAATAAATA
-195 4.1 ACCGATTAAAAATGCACC
Shewanella sp MR-4 Shewmr4_3363 -248 3.8 CCAGAATTTTAATTTATT
-194 4 TTCGATTAAAAATGCACC
Shewanella sp MR-7 Shewmr7_0590 -265 3.8 CCAGAATTTTAATTTATT
-211 4 TTCGATTAAAAATGCACC
Shewanella frigidimarina NCIMB 400 Sfri_0893 -114 4.4 TCTGAGTGAACATTCATA
Shewanella loihica PV-4 Shew_0845 -139 5 GCTGCATATAAATGCACC
Shewanella pealeana ATCC 700345 Spea_0832 -152 4.9 CGTGCATATAAATGCACC
Shewanella halifaxensis HAW-EB4 Shal_0887 -155 4.4 AACGCATAAAAATGCACC
Shewanella piezotolerans WP3 swp_3957 -151 4.5 TATAAATATAAATGCACC
Shewanella woodyi ATCC 51908 Swoo_0978 -125 4.2 TGCGCATAAAAACTCAAT
Position: -95
Score: 5.3
Sequence: CATGAATTTTTATTCAAT
Locus tag: swp_4101
swp_4101 -95 5.3 CATGAATTTTTATTCAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: argR
Ortholog function: Arginine metabolism transcriptional regulator ArgR
Shewanella oneidensis MR-1 SO_0769 -93 5.5 ATTGCATTTTTATTCAGT
Shewanella putrefaciens CN-32 Sputcn32_3220 -96 5.5 AGTGAATTTTTATTCAAC
Shewanella sp W3-18-1 Sputw3181_0721 -96 5.5 AGTGAATTTTTATTCAAC
Shewanella sp ANA-3 Shewana3_3510 -93 5.5 ATTGCATTTTTATTCAGT
Shewanella sp MR-4 Shewmr4_3340 -93 5.5 ATTGCATTTTTATTCAGT
Shewanella sp MR-7 Shewmr7_0613 -93 5.2 ACTGCATTTTTATTCATC
Shewanella baltica OS155 Sbal_0608 -96 5.5 AGTGAATTTTTATTCAAC
Shewanella denitrificans OS217 Sden_0825 -89 5.7 AGTGAATTTTTATTCACT
Shewanella frigidimarina NCIMB 400 Sfri_0640 -104 5.6 AATGAATTTTTATTCAAT
Shewanella amazonensis SB2B Sama_0671 -98 5.3 TCTGCATTTTTATTCACA
Shewanella loihica PV-4 Shew_0866 -95 5.1 CCTGAATTTTTATTCACA
Shewanella pealeana ATCC 700345 Spea_0849 -95 5.5 AATGAATTTTTATTCAGA
Shewanella halifaxensis HAW-EB4 Shal_0902 -95 5.5 AATGAATTTTTATTCACA
Shewanella piezotolerans WP3 swp_4101 -95 5.3 CATGAATTTTTATTCAAT
Shewanella sediminis HAW-EB3 Ssed_0951 -95 5.2 GTTGCATTTTTATTCATA
Shewanella woodyi ATCC 51908 Swoo_1001 -95 5 ATTGCATTCTTATTCATT
Position: -308
Score: 5
Sequence: GTTGAATTTTTACTCAAT
Locus tag: swp_4207
swp_4207 -308 5 GTTGAATTTTTACTCAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: aprE2
Ortholog function: Cold-active alkaline serine protease (EC 3.4.21.62)
Shewanella pealeana ATCC 700345 Spea_0917 -198 4.8 TTTGAACTAATATTCAGT
Shewanella halifaxensis HAW-EB4 Shal_0969 -301 4.4 TCAGCATTTAAATTCAAG
-198 4.6 TTTGAACTATTATTCAAC
Shewanella piezotolerans WP3 swp_4207 -308 5 GTTGAATTTTTACTCAAT
-259 4 GGTGAATATTAGTTAATT
© 2009-2020 RegPrecise