Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of PsrA regulog to Idiomarina baltica OS145

Reference regulog properties
Source regulog: PsrA - Shewanellaceae
Regulator type: Transcription factor
Regulator family: TetR
Regulation mode: repressor
Biological process: Fatty acid degradation
Effector: Oleate
Phylum: Proteobacteria/gamma
Propagated regulon:
Target genome Idiomarina baltica OS145
Orthologous TF(s) OS145_12684
Regulated genes 4
Built upon 295 sites [see more]
Predicted regulatory interactions in Idiomarina baltica OS145
Locus tag Position Score Sequence
Position: -132
Score: 6.1
Sequence: ATTCAAACGCATGTTTAAAT
Locus tag: OS145_03250
OS145_03250 -132 6.1 ATTCAAACGCATGTTTAAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: fadB
Ortholog function: fatty oxidation complex, alpha subunit
Shewanella oneidensis MR-1 SO_0021 -162 6.1 AATTAAACAGTCGTTTAAAT
Shewanella putrefaciens CN-32 Sputcn32_0013 -162 6.1 AATTAAACAGTCGTTTAAAT
Shewanella sp W3-18-1 Sputw3181_0013 -162 6.1 AATTAAACAGTCGTTTAAAT
Shewanella sp ANA-3 Shewana3_0024 -162 6.1 AATTAAACAGTCGTTTAAAT
Shewanella sp MR-4 Shewmr4_0018 -162 6.1 AATTAAACAGTCGTTTAAAT
Shewanella sp MR-7 Shewmr7_0016 -162 6.1 AATTAAACAGTCGTTTAAAT
Shewanella baltica OS155 Sbal_0021 -162 6.1 AATTAAACAGTCGTTTAAAT
Shewanella denitrificans OS217 Sden_0015 -149 6.1 AATTAAACGGCCGTTTAAAT
Shewanella frigidimarina NCIMB 400 Sfri_0013 -161 6.1 AATTAAACGGCCGTTTAAAT
Shewanella amazonensis SB2B Sama_0032 -145 5.9 AATTAAACGATCGTTTTAAT
Shewanella loihica PV-4 Shew_0019 -161 6.1 AATTAAACAAGTGTTTAAAT
Shewanella pealeana ATCC 700345 Spea_0018 -168 5.6 AACTAAACGGTCGTTTAAAT
Shewanella halifaxensis HAW-EB4 Shal_0016 -168 5.5 AACCAAACGACCGTTTAAAT
Shewanella piezotolerans WP3 swp_0035 -161 5.5 ATTCGAACACTCGTTTAAAT
Shewanella sediminis HAW-EB3 Ssed_0023 -228 6.1 AATCAAACACCCGTTTAAAT
Shewanella woodyi ATCC 51908 Swoo_0021 -166 6.1 AATCAAACAAGTGTTTAAAT
Position: -95
Score: 5.6
Sequence: ATTCAAACAGGTGTTCAAAT
Locus tag: OS145_01812
OS145_01812 -95 5.6 ATTCAAACAGGTGTTCAAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: fadE2
Ortholog function: oxidoreductase, acyl-CoA dehydrogenase family
Shewanella oneidensis MR-1 SO_2536 -157 5.9 ATTTAAACAATTGTTTGAAA
Shewanella putrefaciens CN-32 Sputcn32_1791 -156 5.9 ATTTAAACAATTGTTTGAAA
Shewanella sp W3-18-1 Sputw3181_2234 -156 5.9 ATTTAAACAATTGTTTGAAA
Shewanella sp ANA-3 Shewana3_2323 -156 5.9 ATTTAAACAATTGTTTGAAA
Shewanella sp MR-4 Shewmr4_2146 -156 5.9 ATTTAAACAATTGTTTGAAA
Shewanella sp MR-7 Shewmr7_2223 -156 5.9 ATTTAAACAATTGTTTGAAA
Shewanella baltica OS155 Sbal_2306 -156 5.9 ATTTAAACAATTGTTTGAAA
Shewanella denitrificans OS217 Sden_1764 -150 5.7 TTTTAAACAATTGTTTGAAA
Shewanella frigidimarina NCIMB 400 Sfri_1869 -150 5.9 ATTTAAACAATTGTTTGAAA
Shewanella amazonensis SB2B Sama_1870 -149 5.9 ATTTAAACATTTGTTTGAAA
Shewanella loihica PV-4 Shew_2108 -155 5.5 AGTTAAACAATTGTTTGAAA
Shewanella pealeana ATCC 700345 Spea_2393 -154 5.7 AATTAAACATTTGTTTGAAA
-121 4.8 AAATTAACGAACGTTTAAAT
Shewanella halifaxensis HAW-EB4 Shal_1890 -154 6 ATTTAAACATTTGTTTAATT
Shewanella piezotolerans WP3 swp_2312 -181 5.9 ATTTAAACATTTGTTTGAAA
Shewanella sediminis HAW-EB3 Ssed_1999 -156 5.6 TTTTAAACGTTTGTTTGAAA
Shewanella woodyi ATCC 51908 Swoo_2604 -158 5.8 ATTTAAACGTTTGTTTTAAA
Position: -35
Score: 5.8
Sequence: AATTAAACGCATGTTTAAAA
Locus tag: OS145_12684
OS145_12684 -35 5.8 AATTAAACGCATGTTTAAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: psrA
Ortholog function: fatty acid degradation transcriptional regulator, TetR family
Shewanella oneidensis MR-1 SO_2493 40 5.9 ATTTAAACGAGTGTTTTAAA
Shewanella putrefaciens CN-32 Sputcn32_1862 -38 5.9 ATTTAAACGAGTGTTTTAAA
Shewanella sp W3-18-1 Sputw3181_2147 -38 5.9 ATTTAAACGAGTGTTTTAAA
Shewanella sp ANA-3 Shewana3_2155 -38 5.9 ATTTAAACGAGTGTTTTAAA
Shewanella sp MR-4 Shewmr4_2050 -38 5.9 ATTTAAACGAGTGTTTTAAA
Shewanella sp MR-7 Shewmr7_1925 -38 5.9 ATTTAAACGAGTGTTTTAAA
Shewanella baltica OS155 Sbal_2245 -38 5.9 ATTTAAACGAGTGTTTTAAA
Shewanella denitrificans OS217 Sden_2116 -24 6 ATTTAAACAGGTGTTTTAAA
Shewanella frigidimarina NCIMB 400 Sfri_1888 -36 6.3 ATTTAAACAGGTGTTTAAAT
Shewanella amazonensis SB2B Sama_1816 7 5.9 ATTTAAACGAGTGTTTTAAA
Shewanella loihica PV-4 Shew_2052 -39 6.2 ATTTAAACACACGTTTAAAT
Shewanella pealeana ATCC 700345 Spea_2339 -39 5.9 ATTTAAACGAGTGTTTTAAA
Shewanella halifaxensis HAW-EB4 Shal_1945 -25 5.9 ATTTAAACGAGTGTTTAAAA
Shewanella piezotolerans WP3 swp_2385 -41 6.2 ATTTAAACGAGTGTTTAAAT
Shewanella sediminis HAW-EB3 Ssed_2066 -40 6 ATTTAAACGGGTGTTTAAAA
Shewanella woodyi ATCC 51908 Swoo_2543 -41 5.9 ATTTAAACGAGTGTTTTAAA
Position: -35
Score: 5.8
Sequence: AATTAAACGCCCGTTTAAAA
Locus tag: OS145_10515
OS145_10515 -35 5.8 AATTAAACGCCCGTTTAAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: fadH
Ortholog function: NADP-dependent 2,4-dienoyl-CoA reductase
Shewanella oneidensis MR-1 SO_2419 -31 5 TTTAAATCACTTGTTTAAAA
-18 5.4 TTTAAAAAGGATGTTTGAAT
Shewanella putrefaciens CN-32 Sputcn32_2077 -31 5 TTTAAATCACTTGTTTTAAA
-18 5.4 TTTTAAAAGGATGTTTGAAT
Shewanella sp W3-18-1 Sputw3181_1935 -31 5 TTTAAATCACTTGTTTTAAA
-18 5.4 TTTTAAAAGGATGTTTGAAT
Shewanella sp ANA-3 Shewana3_1965 -31 5 TTTAAATCACTTGTTTAAAA
-18 5.4 TTTAAAAAGGATGTTTGAAT
Shewanella sp MR-4 Shewmr4_1910 -31 5 TTTAAATCACTTGTTTAAAA
-18 5.4 TTTAAAAAGGATGTTTGAAT
Shewanella sp MR-7 Shewmr7_2068 -31 5 TTTAAATCACTTGTTTAAAA
-18 5.4 TTTAAAAAGGATGTTTGAAT
Shewanella baltica OS155 Sbal_2056 -31 5 TTTAAATCACTTGTTTTAAA
-18 5.4 TTTTAAAAGGATGTTTGAAT
Shewanella denitrificans OS217 Sden_1900 -31 5 TTTAAATCACTTGTTTAAAA
-18 5.4 TTTAAAAAGGATGTTTGAAT
Shewanella frigidimarina NCIMB 400 Sfri_2144 -84 5.3 TAACAAACGAGCGTTTAAAT
-31 5 TTTAAATCACTTGTTTAAAA
-18 5.4 TTTAAAAAGGATGTTTGAAT
Shewanella amazonensis SB2B Sama_1724 -18 5.5 TTTTAAAAGGGTGTTTGAAT
Shewanella loihica PV-4 Shew_1942 -31 5 TTTAAATCACTTGTTTAAAA
-18 5.4 TTTAAAAAGGATGTTTAAAT
Shewanella pealeana ATCC 700345 Spea_2252 -31 5.3 ATTAAATCACTTGTTTAAAA
-18 5.4 TTTAAAAAGGATGTTTGAAT
Shewanella halifaxensis HAW-EB4 Shal_2030 -31 5 ATTGAATCACTTGTTTAAAA
-18 5.4 TTTAAAAAGGATGTTTGAAT
Shewanella piezotolerans WP3 swp_2472 -31 5.3 ATTAAATCACTTGTTTAAAA
-18 5.4 TTTAAAAAGGATGTTTGAAT
Shewanella sediminis HAW-EB3 Ssed_2310 -31 5 TTTAAATCACTTGTTTAAAA
-18 5.4 TTTAAAAAGGATGTTTGAAT
Shewanella woodyi ATCC 51908 Swoo_2300 -31 5 TTTAAATCAGTTGTTTTAAA
-18 5.4 TTTTAAAAGGATGTTTGAAT
© 2009-2020 RegPrecise