Propagation of PsrA regulog to Idiomarina baltica OS145
| Source regulog: | PsrA - Shewanellaceae |
| Regulator type: | Transcription factor |
| Regulator family: | TetR |
| Regulation mode: | repressor |
| Biological process: | Fatty acid degradation |
| Effector: | Oleate |
| Phylum: | Proteobacteria/gamma |
| Propagated regulon: | |
| Target genome | Idiomarina baltica OS145 |
| Orthologous TF(s) | OS145_12684 |
| Regulated genes | 4 |
| Locus tag | Position | Score | Sequence | |
|---|---|---|---|---|
|
Position: -132
Score: 6.1 Sequence: ATTCAAACGCATGTTTAAAT
Locus tag: OS145_03250
|
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| OS145_03250 | -132 | 6.1 | ATTCAAACGCATGTTTAAAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: fadB | ||||
| Ortholog function: fatty oxidation complex, alpha subunit | ||||
| Shewanella oneidensis MR-1 | SO_0021 | -162 | 6.1 | AATTAAACAGTCGTTTAAAT |
| Shewanella putrefaciens CN-32 | Sputcn32_0013 | -162 | 6.1 | AATTAAACAGTCGTTTAAAT |
| Shewanella sp W3-18-1 | Sputw3181_0013 | -162 | 6.1 | AATTAAACAGTCGTTTAAAT |
| Shewanella sp ANA-3 | Shewana3_0024 | -162 | 6.1 | AATTAAACAGTCGTTTAAAT |
| Shewanella sp MR-4 | Shewmr4_0018 | -162 | 6.1 | AATTAAACAGTCGTTTAAAT |
| Shewanella sp MR-7 | Shewmr7_0016 | -162 | 6.1 | AATTAAACAGTCGTTTAAAT |
| Shewanella baltica OS155 | Sbal_0021 | -162 | 6.1 | AATTAAACAGTCGTTTAAAT |
| Shewanella denitrificans OS217 | Sden_0015 | -149 | 6.1 | AATTAAACGGCCGTTTAAAT |
| Shewanella frigidimarina NCIMB 400 | Sfri_0013 | -161 | 6.1 | AATTAAACGGCCGTTTAAAT |
| Shewanella amazonensis SB2B | Sama_0032 | -145 | 5.9 | AATTAAACGATCGTTTTAAT |
| Shewanella loihica PV-4 | Shew_0019 | -161 | 6.1 | AATTAAACAAGTGTTTAAAT |
| Shewanella pealeana ATCC 700345 | Spea_0018 | -168 | 5.6 | AACTAAACGGTCGTTTAAAT |
| Shewanella halifaxensis HAW-EB4 | Shal_0016 | -168 | 5.5 | AACCAAACGACCGTTTAAAT |
| Shewanella piezotolerans WP3 | swp_0035 | -161 | 5.5 | ATTCGAACACTCGTTTAAAT |
| Shewanella sediminis HAW-EB3 | Ssed_0023 | -228 | 6.1 | AATCAAACACCCGTTTAAAT |
| Shewanella woodyi ATCC 51908 | Swoo_0021 | -166 | 6.1 | AATCAAACAAGTGTTTAAAT |
|
Position: -95
Score: 5.6 Sequence: ATTCAAACAGGTGTTCAAAT
Locus tag: OS145_01812
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| OS145_01812 | -95 | 5.6 | ATTCAAACAGGTGTTCAAAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: fadE2 | ||||
| Ortholog function: oxidoreductase, acyl-CoA dehydrogenase family | ||||
| Shewanella oneidensis MR-1 | SO_2536 | -157 | 5.9 | ATTTAAACAATTGTTTGAAA |
| Shewanella putrefaciens CN-32 | Sputcn32_1791 | -156 | 5.9 | ATTTAAACAATTGTTTGAAA |
| Shewanella sp W3-18-1 | Sputw3181_2234 | -156 | 5.9 | ATTTAAACAATTGTTTGAAA |
| Shewanella sp ANA-3 | Shewana3_2323 | -156 | 5.9 | ATTTAAACAATTGTTTGAAA |
| Shewanella sp MR-4 | Shewmr4_2146 | -156 | 5.9 | ATTTAAACAATTGTTTGAAA |
| Shewanella sp MR-7 | Shewmr7_2223 | -156 | 5.9 | ATTTAAACAATTGTTTGAAA |
| Shewanella baltica OS155 | Sbal_2306 | -156 | 5.9 | ATTTAAACAATTGTTTGAAA |
| Shewanella denitrificans OS217 | Sden_1764 | -150 | 5.7 | TTTTAAACAATTGTTTGAAA |
| Shewanella frigidimarina NCIMB 400 | Sfri_1869 | -150 | 5.9 | ATTTAAACAATTGTTTGAAA |
| Shewanella amazonensis SB2B | Sama_1870 | -149 | 5.9 | ATTTAAACATTTGTTTGAAA |
| Shewanella loihica PV-4 | Shew_2108 | -155 | 5.5 | AGTTAAACAATTGTTTGAAA |
| Shewanella pealeana ATCC 700345 | Spea_2393 | -154 | 5.7 | AATTAAACATTTGTTTGAAA |
| -121 | 4.8 | AAATTAACGAACGTTTAAAT | ||
| Shewanella halifaxensis HAW-EB4 | Shal_1890 | -154 | 6 | ATTTAAACATTTGTTTAATT |
| Shewanella piezotolerans WP3 | swp_2312 | -181 | 5.9 | ATTTAAACATTTGTTTGAAA |
| Shewanella sediminis HAW-EB3 | Ssed_1999 | -156 | 5.6 | TTTTAAACGTTTGTTTGAAA |
| Shewanella woodyi ATCC 51908 | Swoo_2604 | -158 | 5.8 | ATTTAAACGTTTGTTTTAAA |
|
Position: -35
Score: 5.8 Sequence: AATTAAACGCATGTTTAAAA
Locus tag: OS145_12684
|
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| OS145_12684 | -35 | 5.8 | AATTAAACGCATGTTTAAAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: psrA | ||||
| Ortholog function: fatty acid degradation transcriptional regulator, TetR family | ||||
| Shewanella oneidensis MR-1 | SO_2493 | 40 | 5.9 | ATTTAAACGAGTGTTTTAAA |
| Shewanella putrefaciens CN-32 | Sputcn32_1862 | -38 | 5.9 | ATTTAAACGAGTGTTTTAAA |
| Shewanella sp W3-18-1 | Sputw3181_2147 | -38 | 5.9 | ATTTAAACGAGTGTTTTAAA |
| Shewanella sp ANA-3 | Shewana3_2155 | -38 | 5.9 | ATTTAAACGAGTGTTTTAAA |
| Shewanella sp MR-4 | Shewmr4_2050 | -38 | 5.9 | ATTTAAACGAGTGTTTTAAA |
| Shewanella sp MR-7 | Shewmr7_1925 | -38 | 5.9 | ATTTAAACGAGTGTTTTAAA |
| Shewanella baltica OS155 | Sbal_2245 | -38 | 5.9 | ATTTAAACGAGTGTTTTAAA |
| Shewanella denitrificans OS217 | Sden_2116 | -24 | 6 | ATTTAAACAGGTGTTTTAAA |
| Shewanella frigidimarina NCIMB 400 | Sfri_1888 | -36 | 6.3 | ATTTAAACAGGTGTTTAAAT |
| Shewanella amazonensis SB2B | Sama_1816 | 7 | 5.9 | ATTTAAACGAGTGTTTTAAA |
| Shewanella loihica PV-4 | Shew_2052 | -39 | 6.2 | ATTTAAACACACGTTTAAAT |
| Shewanella pealeana ATCC 700345 | Spea_2339 | -39 | 5.9 | ATTTAAACGAGTGTTTTAAA |
| Shewanella halifaxensis HAW-EB4 | Shal_1945 | -25 | 5.9 | ATTTAAACGAGTGTTTAAAA |
| Shewanella piezotolerans WP3 | swp_2385 | -41 | 6.2 | ATTTAAACGAGTGTTTAAAT |
| Shewanella sediminis HAW-EB3 | Ssed_2066 | -40 | 6 | ATTTAAACGGGTGTTTAAAA |
| Shewanella woodyi ATCC 51908 | Swoo_2543 | -41 | 5.9 | ATTTAAACGAGTGTTTTAAA |
|
Position: -35
Score: 5.8 Sequence: AATTAAACGCCCGTTTAAAA
Locus tag: OS145_10515
|
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| OS145_10515 | -35 | 5.8 | AATTAAACGCCCGTTTAAAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: fadH | ||||
| Ortholog function: NADP-dependent 2,4-dienoyl-CoA reductase | ||||
| Shewanella oneidensis MR-1 | SO_2419 | -31 | 5 | TTTAAATCACTTGTTTAAAA |
| -18 | 5.4 | TTTAAAAAGGATGTTTGAAT | ||
| Shewanella putrefaciens CN-32 | Sputcn32_2077 | -31 | 5 | TTTAAATCACTTGTTTTAAA |
| -18 | 5.4 | TTTTAAAAGGATGTTTGAAT | ||
| Shewanella sp W3-18-1 | Sputw3181_1935 | -31 | 5 | TTTAAATCACTTGTTTTAAA |
| -18 | 5.4 | TTTTAAAAGGATGTTTGAAT | ||
| Shewanella sp ANA-3 | Shewana3_1965 | -31 | 5 | TTTAAATCACTTGTTTAAAA |
| -18 | 5.4 | TTTAAAAAGGATGTTTGAAT | ||
| Shewanella sp MR-4 | Shewmr4_1910 | -31 | 5 | TTTAAATCACTTGTTTAAAA |
| -18 | 5.4 | TTTAAAAAGGATGTTTGAAT | ||
| Shewanella sp MR-7 | Shewmr7_2068 | -31 | 5 | TTTAAATCACTTGTTTAAAA |
| -18 | 5.4 | TTTAAAAAGGATGTTTGAAT | ||
| Shewanella baltica OS155 | Sbal_2056 | -31 | 5 | TTTAAATCACTTGTTTTAAA |
| -18 | 5.4 | TTTTAAAAGGATGTTTGAAT | ||
| Shewanella denitrificans OS217 | Sden_1900 | -31 | 5 | TTTAAATCACTTGTTTAAAA |
| -18 | 5.4 | TTTAAAAAGGATGTTTGAAT | ||
| Shewanella frigidimarina NCIMB 400 | Sfri_2144 | -84 | 5.3 | TAACAAACGAGCGTTTAAAT |
| -31 | 5 | TTTAAATCACTTGTTTAAAA | ||
| -18 | 5.4 | TTTAAAAAGGATGTTTGAAT | ||
| Shewanella amazonensis SB2B | Sama_1724 | -18 | 5.5 | TTTTAAAAGGGTGTTTGAAT |
| Shewanella loihica PV-4 | Shew_1942 | -31 | 5 | TTTAAATCACTTGTTTAAAA |
| -18 | 5.4 | TTTAAAAAGGATGTTTAAAT | ||
| Shewanella pealeana ATCC 700345 | Spea_2252 | -31 | 5.3 | ATTAAATCACTTGTTTAAAA |
| -18 | 5.4 | TTTAAAAAGGATGTTTGAAT | ||
| Shewanella halifaxensis HAW-EB4 | Shal_2030 | -31 | 5 | ATTGAATCACTTGTTTAAAA |
| -18 | 5.4 | TTTAAAAAGGATGTTTGAAT | ||
| Shewanella piezotolerans WP3 | swp_2472 | -31 | 5.3 | ATTAAATCACTTGTTTAAAA |
| -18 | 5.4 | TTTAAAAAGGATGTTTGAAT | ||
| Shewanella sediminis HAW-EB3 | Ssed_2310 | -31 | 5 | TTTAAATCACTTGTTTAAAA |
| -18 | 5.4 | TTTAAAAAGGATGTTTGAAT | ||
| Shewanella woodyi ATCC 51908 | Swoo_2300 | -31 | 5 | TTTAAATCAGTTGTTTTAAA |
| -18 | 5.4 | TTTTAAAAGGATGTTTGAAT | ||