Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of HexR regulog to Alteromonas macleodii 'Deep ecotype'

Reference regulog properties
Source regulog: HexR - Shewanellaceae
Regulator type: Transcription factor
Regulator family: RpiR
Regulation mode: repressor (activator)
Biological process: Central carbohydrate metabolism
Effector: 2-keto-3-deoxy-6-phosphogluconate
Phylum: Proteobacteria/gamma
Propagated regulon:
Target genome Alteromonas macleodii 'Deep ecotype'
Orthologous TF(s) MADE_01243
Regulated genes 4
Built upon 316 sites [see more]
Predicted regulatory interactions in Alteromonas macleodii 'Deep ecotype'
Locus tag Position Score Sequence
Position: -193
Score: 5.4
Sequence: ATGTAGTAAAATTACAA
Locus tag: MADE_01243
MADE_01243 -193 5.4 ATGTAGTAAAATTACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: hexR
Ortholog function: Central carbohydrate metabolism transcription regulator HexR, RpiR family
Shewanella oneidensis MR-1 SO_2490 -249 5 TTGTAATATAACAACAG
Shewanella putrefaciens CN-32 Sputcn32_1865 -252 4.8 TTGTTGTAATATAACAA
-249 5 TTGTAATATAACAACAG
Shewanella sp W3-18-1 Sputw3181_2143 -249 5 TTGTAATATAACAACAG
Shewanella sp ANA-3 Shewana3_2152 -250 5 TTGTAATATAACAACAG
Shewanella sp MR-4 Shewmr4_2047 -250 5 TTGTAATATAACAACAG
Shewanella sp MR-7 Shewmr7_1928 -250 5 TTGTAATATAACAACAG
Shewanella baltica OS155 Sbal_2242 -250 5 TTGTAATATAACAACAG
Shewanella denitrificans OS217 Sden_2080 -249 5 TTGTAATATAACAACAG
Shewanella frigidimarina NCIMB 400 Sfri_1891 -266 5 TTGTAATATAACAACAG
-122 4.5 TTGAAAAATAACTACAG
-54 4.6 ATGATATAAAATTACAT
Shewanella amazonensis SB2B Sama_1813 -251 5 TTGTAATATAACAACAG
Shewanella loihica PV-4 Shew_2049 -249 5 TTGTAATATAACAACAG
-151 4.8 TTGTGATTAAATTACTA
Shewanella pealeana ATCC 700345 Spea_2336 -254 5 TTGTAATATAACAACAG
-157 4.3 TCGTGATAAAATTACTA
-40 4.5 ATATAATAAAACTACAT
Shewanella halifaxensis HAW-EB4 Shal_1948 -252 5 TTGTAATATAACAACAG
-155 4.8 TTGTGATAAAATTACTA
Shewanella piezotolerans WP3 swp_2389 -252 5 TTGTAATATAACAACAG
-155 4.3 TCGTGATAAAATTACTA
-40 4.5 ATATAATAAAACTACAT
Shewanella sediminis HAW-EB3 Ssed_2069 -248 5 TTGTAATATAACAACAG
-150 4.3 TCGTGATTAAATTACTA
Shewanella woodyi ATCC 51908 Swoo_2540 -248 5 TTGTAATATAACAACAG
-150 4.8 TTGTGATTAAATTACTA
Position: -108
Score: 5.4
Sequence: TTGTAATTTTACTACAT
Locus tag: MADE_01244
MADE_01244 -108 5.4 TTGTAATTTTACTACAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: zwf
Ortholog function: Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49)
Shewanella oneidensis MR-1 SO_2489 -78 5 CTGTTGTTATATTACAA
Shewanella putrefaciens CN-32 Sputcn32_1866 -78 5 CTGTTGTTATATTACAA
Shewanella sp W3-18-1 Sputw3181_2142 -78 5 CTGTTGTTATATTACAA
Shewanella sp ANA-3 Shewana3_2151 -79 5 CTGTTGTTATATTACAA
Shewanella sp MR-4 Shewmr4_2046 -79 5 CTGTTGTTATATTACAA
Shewanella sp MR-7 Shewmr7_1929 -79 5 CTGTTGTTATATTACAA
Shewanella baltica OS155 Sbal_2241 -79 5 CTGTTGTTATATTACAA
Shewanella denitrificans OS217 Sden_2079 -260 4.2 TAGTTGTTTTATTACCT
-88 5 CTGTTGTTATATTACAA
Shewanella frigidimarina NCIMB 400 Sfri_1892 -232 4.5 CTGTAGTTATTTTTCAA
-88 5 CTGTTGTTATATTACAA
Shewanella amazonensis SB2B Sama_1812 -78 5 CTGTTGTTATATTACAA
Shewanella loihica PV-4 Shew_2048 -174 4.8 TAGTAATTTAATCACAA
-76 5 CTGTTGTTATATTACAA
Shewanella pealeana ATCC 700345 Spea_2335 -54 5 CTGTTGTTATATTACAA
Shewanella halifaxensis HAW-EB4 Shal_1949 -175 4.8 TAGTAATTTTATCACAA
-78 5 CTGTTGTTATATTACAA
Shewanella piezotolerans WP3 swp_2390 -175 4.3 TAGTAATTTTATCACGA
-78 5 CTGTTGTTATATTACAA
Shewanella sediminis HAW-EB3 Ssed_2070 -176 4.3 TAGTAATTTAATCACGA
-78 5 CTGTTGTTATATTACAA
Shewanella woodyi ATCC 51908 Swoo_2539 -175 4.8 TAGTAATTTAATCACAA
-77 5 CTGTTGTTATATTACAA
Position: -254
Score: 5.4
Sequence: GTGTAATTTTATTACAA
Locus tag: MADE_02382
MADE_02382 -254 5.4 GTGTAATTTTATTACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ppsA
Ortholog function: Phosphoenolpyruvate synthase (EC 2.7.9.2)
Shewanella oneidensis MR-1 SO_2644 -113 5.5 TAGTAATAAAATTACAA
Shewanella putrefaciens CN-32 Sputcn32_2243 -112 5.5 TAGTAATAAAATTACAA
Shewanella sp W3-18-1 Sputw3181_1765 -112 5.5 TAGTAATAAAATTACAA
Shewanella sp ANA-3 Shewana3_1736 -112 5.5 TAGTAATAAAATTACAA
Shewanella sp MR-4 Shewmr4_1592 -112 5.5 TAGTAATAAAATTACAA
Shewanella baltica OS155 Sbal_2488 -112 5.5 TAGTAATAAAATTACAA
Shewanella denitrificans OS217 Sden_2009 -112 5.5 TAGTAATAAAATTACAA
Shewanella frigidimarina NCIMB 400 Sfri_2297 -57 5.5 TAGTAATAAAATTACAA
Shewanella amazonensis SB2B Sama_2072 -112 5.5 TAGTAATAAAATTACAA
Shewanella loihica PV-4 Shew_1549 -114 5.5 TAGTAATAAAATTACAA
Shewanella pealeana ATCC 700345 Spea_2549 -114 5.5 TAGTAATAAAATTACAA
Shewanella halifaxensis HAW-EB4 Shal_1705 -114 5.5 TAGTAATAAAATTACAA
Shewanella piezotolerans WP3 swp_1851 -150 5.5 TAGTAATAAAATTACAA
Shewanella sediminis HAW-EB3 Ssed_1871 -114 5.5 TAGTAATAAAATTACAA
Shewanella woodyi ATCC 51908 Swoo_2715 -114 5.5 TAGTAATAAAATTACAA
© 2009-2020 RegPrecise