Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
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Propagation of Fnr regulog to Glaciecola sp. HTCC2999

Reference regulog properties
Source regulog: Fnr - Shewanellaceae
Regulator type: Transcription factor
Regulator family: CRP
Regulation mode:
Biological process: Anaerobic metabolism
Effector: Oxygen
Phylum: Proteobacteria/gamma
Propagated regulon:
Target genome Glaciecola sp. HTCC2999
Orthologous TF(s) GHTCC_010100006074
Regulated genes 2
Built upon 541 sites [see more]
Predicted regulatory interactions in Glaciecola sp. HTCC2999
Locus tag Position Score Sequence
Position: -108
Score: 4.7
Sequence: TTGATCCACATCAT
Position: 31
Score: 4.2
Sequence: TTGAGCCTAATCAA
Locus tag: GHTCC_010100006069
GHTCC_010100006069 -108 4.7 TTGATCCACATCAT
31 4.2 TTGAGCCTAATCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: uspE
Ortholog function: Universal stress protein E
Shewanella amazonensis SB2B Sama_1800 -74 4.6 TTGATCTAAAACAA
Shewanella baltica OS155 Sbal_2210 -72 4.9 TTGATCTAGAACAA
Shewanella baltica OS155 Sbal_4496 -72 4.9 TTGATCTAGAACAA
Shewanella denitrificans OS217 Sden_1842 -69 4.2 TTGATATAGCTCAC
Shewanella frigidimarina NCIMB 400 Sfri_2019 -87 4.6 ATGATCTATCTCAA
Shewanella halifaxensis HAW-EB4 Shal_2206 -73 4.6 TTGATCTAAAACAA
Shewanella loihica PV-4 Shew_1994 -72 4.6 TTGATCTAAAACAA
Shewanella oneidensis MR-1 SO2355 -72 4.9 TTGATCTAGAACAA
Shewanella pealeana ATCC 700345 Spea_2223 -74 4.6 TTGATCTAAAACAA
Shewanella piezotolerans WP3 swp_2581 -71 4.6 TTGATCTAAAACAA
Shewanella putrefaciens CN-32 Sputcn32_1950 -72 4.9 TTGATCTAGAACAA
Shewanella sediminis HAW-EB3 Ssed_2220 -71 4.6 TTGATCTGAAACAA
Shewanella sp ANA-3 Shewana3_2116 -72 4.9 TTGATCTAGAACAA
Shewanella sp MR-4 Shewmr4_2015 -72 4.9 TTGATCTAGAACAA
Shewanella sp MR-7 Shewmr7_1960 -72 4.9 TTGATCTAGAACAA
Shewanella sp W3-18-1 Sputw3181_2055 -72 4.9 TTGATCTAGAACAA
Shewanella woodyi ATCC 51908 Swoo_2416 -70 4.9 TTGATCTAAAGCAA
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