Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of SO4468 regulog to Shewanella violacea DSS12

Reference regulog properties
Source regulog: SO4468 - Shewanellaceae
Regulator type: Transcription factor
Regulator family: TetR
Regulation mode: repressor
Biological process:
Phylum: Proteobacteria/gamma
Propagated regulon:
Target genome Shewanella violacea DSS12
Orthologous TF(s) SVI_3948
Regulated genes 2
Built upon 22 sites [see more]
Predicted regulatory interactions in Shewanella violacea DSS12
Locus tag Position Score Sequence
Position: -38
Score: 5.6
Locus tag: SVI_3948
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO4468
Ortholog function: Transcriptional regulator, TetR family
Shewanella oneidensis MR-1 SO_4468 -38 5.6 CTAGACGACTGGTCTAATTT
Shewanella putrefaciens CN-32 Sputcn32_0378 -25 5.7 CTAGACGACCGGTCTAATTT
Shewanella sp W3-18-1 Sputw3181_0228 -25 5.7 CTAGACGACCGGTCTAATTT
Shewanella sp ANA-3 Shewana3_0262 -38 5.8 CTAGACGACTGGTCTAATAT
Shewanella sp MR-4 Shewmr4_0261 -38 5.6 CTAGACGACTGGTCTAATTT
Shewanella sp MR-7 Shewmr7_3760 -38 5.6 CTAGACGACTGGTCTAATTT
Shewanella baltica OS155 Sbal_0272 -37 5.6 CTAGACGACCGGTCTATTTT
Shewanella denitrificans OS217 Sden_1388 -36 5.9 CTAGACGACCGGTCTAATTG
Shewanella amazonensis SB2B Sama_0476 -37 5.6 CTAGACGACTGGTCTAATCG
Shewanella piezotolerans WP3 swp_0257 -37 5.6 CTAGACGACCGGTCTAATAC
Shewanella sediminis HAW-EB3 Ssed_0287 -36 5.5 CTAGACGACCGGTCTATTCT