Propagation of PsrA regulog to Shewanella violacea DSS12
Source regulog: | PsrA - Shewanellaceae |
Regulator type: | Transcription factor |
Regulator family: | TetR |
Regulation mode: | repressor |
Biological process: | Fatty acid degradation |
Effector: | Oleate |
Phylum: | Proteobacteria/gamma |
Propagated regulon: | |
Target genome | Shewanella violacea DSS12 |
Orthologous TF(s) | SVI_2321 |
Regulated genes | 15 |

Locus tag | Position | Score | Sequence | |
---|---|---|---|---|
Position: -132
Score: 5.7 Sequence: AGTCAAACAAGCGTTTAAAT
Locus tag: SVI_0052
|
||||
SVI_0052 | -132 | 5.7 | AGTCAAACAAGCGTTTAAAT | |
Supported by regulated orthologs from reference regulons | ||||
Ortholog gene name: fadB | ||||
Ortholog function: fatty oxidation complex, alpha subunit | ||||
Shewanella oneidensis MR-1 | SO_0021 | -162 | 6.1 | AATTAAACAGTCGTTTAAAT |
Shewanella putrefaciens CN-32 | Sputcn32_0013 | -162 | 6.1 | AATTAAACAGTCGTTTAAAT |
Shewanella sp W3-18-1 | Sputw3181_0013 | -162 | 6.1 | AATTAAACAGTCGTTTAAAT |
Shewanella sp ANA-3 | Shewana3_0024 | -162 | 6.1 | AATTAAACAGTCGTTTAAAT |
Shewanella sp MR-4 | Shewmr4_0018 | -162 | 6.1 | AATTAAACAGTCGTTTAAAT |
Shewanella sp MR-7 | Shewmr7_0016 | -162 | 6.1 | AATTAAACAGTCGTTTAAAT |
Shewanella baltica OS155 | Sbal_0021 | -162 | 6.1 | AATTAAACAGTCGTTTAAAT |
Shewanella denitrificans OS217 | Sden_0015 | -149 | 6.1 | AATTAAACGGCCGTTTAAAT |
Shewanella frigidimarina NCIMB 400 | Sfri_0013 | -161 | 6.1 | AATTAAACGGCCGTTTAAAT |
Shewanella amazonensis SB2B | Sama_0032 | -145 | 5.9 | AATTAAACGATCGTTTTAAT |
Shewanella loihica PV-4 | Shew_0019 | -161 | 6.1 | AATTAAACAAGTGTTTAAAT |
Shewanella pealeana ATCC 700345 | Spea_0018 | -168 | 5.6 | AACTAAACGGTCGTTTAAAT |
Shewanella halifaxensis HAW-EB4 | Shal_0016 | -168 | 5.5 | AACCAAACGACCGTTTAAAT |
Shewanella piezotolerans WP3 | swp_0035 | -161 | 5.5 | ATTCGAACACTCGTTTAAAT |
Shewanella sediminis HAW-EB3 | Ssed_0023 | -228 | 6.1 | AATCAAACACCCGTTTAAAT |
Shewanella woodyi ATCC 51908 | Swoo_0021 | -166 | 6.1 | AATCAAACAAGTGTTTAAAT |
Position: -160
Score: 5.9 Sequence: ATTAAAACGTGTGTTTAATT
Locus tag: SVI_0510
|
||||
SVI_0510 | -160 | 5.9 | ATTAAAACGTGTGTTTAATT | |
Supported by regulated orthologs from reference regulons | ||||
Ortholog gene name: SO0881 | ||||
Ortholog function: conserved hypothetical protein | ||||
Shewanella oneidensis MR-1 | SO_0881 | -78 | 5.9 | ATTAAAACGTGTGTTTAATT |
Shewanella putrefaciens CN-32 | Sputcn32_3121 | -77 | 5.9 | ATTAAAACGTATGTTTAATT |
Shewanella sp W3-18-1 | Sputw3181_0822 | -77 | 5.9 | ATTAAAACGTATGTTTAATT |
Shewanella sp ANA-3 | Shewana3_3397 | -78 | 5.9 | ATTAAAACGTGTGTTTAATT |
Shewanella sp MR-4 | Shewmr4_0737 | -78 | 5.9 | ATTAAAACGTGTGTTTAATT |
Shewanella sp MR-7 | Shewmr7_3285 | -78 | 5.9 | ATTAAAACGTGTGTTTAATT |
Shewanella baltica OS155 | Sbal_3483 | -155 | 5.9 | ATTAAAACGTGTGTTTAATT |
Shewanella frigidimarina NCIMB 400 | Sfri_3287 | -81 | 6.1 | ATTTAAACGTATGTTTAAAT |
Shewanella amazonensis SB2B | Sama_2999 | -151 | 5.7 | AATAAAACGTATGTTTAATT |
Shewanella loihica PV-4 | Shew_0590 | -116 | 6 | ATTAAAACATGTGTTTAATT |
Shewanella pealeana ATCC 700345 | Spea_3504 | -145 | 5.9 | ATTAAAACGTGTGTTTAATT |
-98 | 4.7 | TTTTAAACTGGTCTTTTATT | ||
Shewanella halifaxensis HAW-EB4 | Shal_3598 | -146 | 5.9 | ATTAAAACGTATGTTTAATT |
Shewanella piezotolerans WP3 | swp_0761 | -175 | 5.9 | ATTAAAACGTGTGTTTAATT |
Shewanella sediminis HAW-EB3 | Ssed_3864 | -260 | 5.9 | ATTAAAACGTGTGTTTAATT |
Position: -119
Score: 5.6 Sequence: ATACAAACGGTCGTTTGAAT
Locus tag: SVI_1268
|
||||
SVI_1268 | -119 | 5.6 | ATACAAACGGTCGTTTGAAT | |
Supported by regulated orthologs from reference regulons | ||||
Ortholog gene name: etfB | ||||
Ortholog function: electron transfer flavoprotein, beta subunit | ||||
Shewanella oneidensis MR-1 | SO_3145 | -121 | 5.4 | ATGCAAACAGGCGTTTGACT |
Shewanella putrefaciens CN-32 | Sputcn32_2511 | -121 | 5.2 | ATGCAAACAGTCGTTTGAGT |
Shewanella sp W3-18-1 | Sputw3181_1497 | -121 | 5.2 | ATGCAAACAGTCGTTTGAGT |
Shewanella sp ANA-3 | Shewana3_1405 | -121 | 5.2 | ATGCAAACAGGCGTTTGAGT |
Shewanella sp MR-4 | Shewmr4_1352 | -121 | 5.2 | ATGCAAACAGGCGTTTGAGT |
Shewanella sp MR-7 | Shewmr7_1417 | -121 | 5.2 | ATGCAAACAGGCGTTTGAGT |
Shewanella baltica OS155 | Sbal_2847 | -121 | 5.4 | ATGCAAACAGGCGTTTGACT |
Shewanella denitrificans OS217 | Sden_2539 | -120 | 5.1 | ATGCAAACGCTTGTTTAACA |
Shewanella frigidimarina NCIMB 400 | Sfri_2748 | -122 | 5.4 | ATGTAAACAGTCGTTTGACT |
Shewanella sediminis HAW-EB3 | Ssed_1445 | -120 | 5.6 | ATACAAACGGTCGTTTGAAT |
Shewanella woodyi ATCC 51908 | Swoo_3236 | -123 | 5.4 | ATACAAACGGGCGTTTGAAA |
Position: -99
Score: 6.1 Sequence: ATTCAAACACACGTTTAAAT
Locus tag: SVI_1318
|
||||
SVI_1318 | -99 | 6.1 | ATTCAAACACACGTTTAAAT | |
Supported by regulated orthologs from reference regulons | ||||
Ortholog gene name: fadE3 | ||||
Ortholog function: acyl-CoA dehydrogenase | ||||
Shewanella loihica PV-4 | Shew_3003 | -199 | 4.9 | ATTCAAACAATTATATGAAA |
-186 | 5.5 | TATGAAACAAGTGTTTAAAT | ||
Shewanella pealeana ATCC 700345 | Spea_1234 | -99 | 5.6 | ATCCAAACGCACGTTTAAAT |
Shewanella halifaxensis HAW-EB4 | Shal_1266 | -98 | 5.7 | ATCCAAACAAGCGTTTAAAT |
Shewanella piezotolerans WP3 | swp_3422 | -98 | 5.8 | ATCTAAACAACCGTTTAAAT |
Shewanella woodyi ATCC 51908 | Swoo_1504 | -98 | 6.2 | ATTCAAACAATTGTTTAAAT |
Position: -18
Score: 5.4 Sequence: TTTAAAAAGGATGTTTGAAT
Locus tag: SVI_2061
|
||||
SVI_2061 | -18 | 5.4 | TTTAAAAAGGATGTTTGAAT | |
Supported by regulated orthologs from reference regulons | ||||
Ortholog gene name: fadH | ||||
Ortholog function: NADP-dependent 2,4-dienoyl-CoA reductase | ||||
Shewanella oneidensis MR-1 | SO_2419 | -31 | 5 | TTTAAATCACTTGTTTAAAA |
-18 | 5.4 | TTTAAAAAGGATGTTTGAAT | ||
Shewanella putrefaciens CN-32 | Sputcn32_2077 | -31 | 5 | TTTAAATCACTTGTTTTAAA |
-18 | 5.4 | TTTTAAAAGGATGTTTGAAT | ||
Shewanella sp W3-18-1 | Sputw3181_1935 | -31 | 5 | TTTAAATCACTTGTTTTAAA |
-18 | 5.4 | TTTTAAAAGGATGTTTGAAT | ||
Shewanella sp ANA-3 | Shewana3_1965 | -31 | 5 | TTTAAATCACTTGTTTAAAA |
-18 | 5.4 | TTTAAAAAGGATGTTTGAAT | ||
Shewanella sp MR-4 | Shewmr4_1910 | -31 | 5 | TTTAAATCACTTGTTTAAAA |
-18 | 5.4 | TTTAAAAAGGATGTTTGAAT | ||
Shewanella sp MR-7 | Shewmr7_2068 | -31 | 5 | TTTAAATCACTTGTTTAAAA |
-18 | 5.4 | TTTAAAAAGGATGTTTGAAT | ||
Shewanella baltica OS155 | Sbal_2056 | -31 | 5 | TTTAAATCACTTGTTTTAAA |
-18 | 5.4 | TTTTAAAAGGATGTTTGAAT | ||
Shewanella denitrificans OS217 | Sden_1900 | -31 | 5 | TTTAAATCACTTGTTTAAAA |
-18 | 5.4 | TTTAAAAAGGATGTTTGAAT | ||
Shewanella frigidimarina NCIMB 400 | Sfri_2144 | -84 | 5.3 | TAACAAACGAGCGTTTAAAT |
-31 | 5 | TTTAAATCACTTGTTTAAAA | ||
-18 | 5.4 | TTTAAAAAGGATGTTTGAAT | ||
Shewanella amazonensis SB2B | Sama_1724 | -18 | 5.5 | TTTTAAAAGGGTGTTTGAAT |
Shewanella loihica PV-4 | Shew_1942 | -31 | 5 | TTTAAATCACTTGTTTAAAA |
-18 | 5.4 | TTTAAAAAGGATGTTTAAAT | ||
Shewanella pealeana ATCC 700345 | Spea_2252 | -31 | 5.3 | ATTAAATCACTTGTTTAAAA |
-18 | 5.4 | TTTAAAAAGGATGTTTGAAT | ||
Shewanella halifaxensis HAW-EB4 | Shal_2030 | -31 | 5 | ATTGAATCACTTGTTTAAAA |
-18 | 5.4 | TTTAAAAAGGATGTTTGAAT | ||
Shewanella piezotolerans WP3 | swp_2472 | -31 | 5.3 | ATTAAATCACTTGTTTAAAA |
-18 | 5.4 | TTTAAAAAGGATGTTTGAAT | ||
Shewanella sediminis HAW-EB3 | Ssed_2310 | -31 | 5 | TTTAAATCACTTGTTTAAAA |
-18 | 5.4 | TTTAAAAAGGATGTTTGAAT | ||
Shewanella woodyi ATCC 51908 | Swoo_2300 | -31 | 5 | TTTAAATCAGTTGTTTTAAA |
-18 | 5.4 | TTTTAAAAGGATGTTTGAAT | ||
Position: -40
Score: 6.2 Sequence: ATTTAAACAAGTGTTTTAAT
Locus tag: SVI_2081
|
||||
SVI_2081 | -40 | 6.2 | ATTTAAACAAGTGTTTTAAT | |
Supported by regulated orthologs from reference regulons | ||||
Ortholog gene name: acdH | ||||
Ortholog function: acyl-CoA dehydrogenase family protein | ||||
Shewanella oneidensis MR-1 | SO_2395 | -41 | 6.1 | ATTAAAACAACTGTTTTAAT |
Shewanella putrefaciens CN-32 | Sputcn32_2035 | -41 | 6.1 | ATTAAAACAACTGTTTTAAT |
Shewanella sp W3-18-1 | Sputw3181_1978 | -41 | 6.1 | ATTAAAACAACTGTTTTAAT |
Shewanella sp ANA-3 | Shewana3_1984 | -41 | 6.2 | ATTAAAACAACTGTTTAAAT |
Shewanella sp MR-4 | Shewmr4_1931 | -41 | 6.2 | ATTAAAACAACTGTTTAAAT |
Shewanella sp MR-7 | Shewmr7_2047 | -41 | 6.2 | ATTAAAACAACTGTTTAAAT |
Shewanella baltica OS155 | Sbal_2077 | -41 | 6.1 | ATTAAAACAACTGTTTTAAT |
Shewanella denitrificans OS217 | Sden_1761 | -39 | 6.1 | ATTAAAACACATGTTTGAAT |
Shewanella frigidimarina NCIMB 400 | Sfri_2115 | -40 | 6.1 | ATTAAAACAACTGTTTTAAT |
Shewanella amazonensis SB2B | Sama_1743 | -40 | 5.9 | ATTGAAACAACTGTTTAAAT |
Shewanella loihica PV-4 | Shew_1961 | -41 | 6.1 | ATTAAAACGACTGTTTTAAT |
Shewanella pealeana ATCC 700345 | Spea_2081 | -40 | 5.7 | TTTGAAACAACTGTTTAAAT |
Shewanella halifaxensis HAW-EB4 | Shal_2054 | -40 | 5.7 | TTTGAAACAACTGTTTAAAT |
Shewanella piezotolerans WP3 | swp_2502 | -40 | 5.9 | ATTGAAACATCTGTTTAAAT |
Shewanella sediminis HAW-EB3 | Ssed_2292 | -40 | 6.1 | ATTAAAACAACTGTTTTAAT |
Shewanella woodyi ATCC 51908 | Swoo_2323 | -40 | 6.1 | ATTAAAACAACTGTTTTAAT |
Position: -40
Score: 6 Sequence: ATTTAAACAAGTGTTTAAAA
Locus tag: SVI_2321
|
||||
SVI_2321 | -40 | 6 | ATTTAAACAAGTGTTTAAAA | |
Supported by regulated orthologs from reference regulons | ||||
Ortholog gene name: psrA | ||||
Ortholog function: fatty acid degradation transcriptional regulator, TetR family | ||||
Shewanella oneidensis MR-1 | SO_2493 | 40 | 5.9 | ATTTAAACGAGTGTTTTAAA |
Shewanella putrefaciens CN-32 | Sputcn32_1862 | -38 | 5.9 | ATTTAAACGAGTGTTTTAAA |
Shewanella sp W3-18-1 | Sputw3181_2147 | -38 | 5.9 | ATTTAAACGAGTGTTTTAAA |
Shewanella sp ANA-3 | Shewana3_2155 | -38 | 5.9 | ATTTAAACGAGTGTTTTAAA |
Shewanella sp MR-4 | Shewmr4_2050 | -38 | 5.9 | ATTTAAACGAGTGTTTTAAA |
Shewanella sp MR-7 | Shewmr7_1925 | -38 | 5.9 | ATTTAAACGAGTGTTTTAAA |
Shewanella baltica OS155 | Sbal_2245 | -38 | 5.9 | ATTTAAACGAGTGTTTTAAA |
Shewanella denitrificans OS217 | Sden_2116 | -24 | 6 | ATTTAAACAGGTGTTTTAAA |
Shewanella frigidimarina NCIMB 400 | Sfri_1888 | -36 | 6.3 | ATTTAAACAGGTGTTTAAAT |
Shewanella amazonensis SB2B | Sama_1816 | 7 | 5.9 | ATTTAAACGAGTGTTTTAAA |
Shewanella loihica PV-4 | Shew_2052 | -39 | 6.2 | ATTTAAACACACGTTTAAAT |
Shewanella pealeana ATCC 700345 | Spea_2339 | -39 | 5.9 | ATTTAAACGAGTGTTTTAAA |
Shewanella halifaxensis HAW-EB4 | Shal_1945 | -25 | 5.9 | ATTTAAACGAGTGTTTAAAA |
Shewanella piezotolerans WP3 | swp_2385 | -41 | 6.2 | ATTTAAACGAGTGTTTAAAT |
Shewanella sediminis HAW-EB3 | Ssed_2066 | -40 | 6 | ATTTAAACGGGTGTTTAAAA |
Shewanella woodyi ATCC 51908 | Swoo_2543 | -41 | 5.9 | ATTTAAACGAGTGTTTTAAA |
Position: -132
Score: 5.4 Sequence: ATTAAAACACTTGTATTAAA
Locus tag: SVI_2471
|
||||
SVI_2471 | -132 | 5.4 | ATTAAAACACTTGTATTAAA | |
Supported by regulated orthologs from reference regulons | ||||
Ortholog gene name: fadD1 | ||||
Ortholog function: long-chain-fatty-acid--CoA ligase | ||||
Shewanella oneidensis MR-1 | SO_2581 | -136 | 5.5 | ATTAAAACGCCCGTATGATT |
Shewanella putrefaciens CN-32 | Sputcn32_1761 | -135 | 5.4 | ATTAAAACGCTCGTATGATT |
Shewanella sp W3-18-1 | Sputw3181_2264 | -135 | 5.4 | ATTAAAACGCTCGTATGATT |
Shewanella sp ANA-3 | Shewana3_2386 | -136 | 5.5 | ATTAAAACGCCCGTATGATT |
Shewanella sp MR-4 | Shewmr4_2177 | -136 | 5.5 | ATTAAAACGCCCGTATGATT |
Shewanella sp MR-7 | Shewmr7_2254 | -136 | 5.5 | ATTAAAACGCCCGTATGATT |
Shewanella baltica OS155 | Sbal_1864 | -137 | 5.4 | ATTAAAACGCTCGTATGATT |
Shewanella denitrificans OS217 | Sden_1625 | -169 | 5.6 | ATTTAAACGGCCGTATGATT |
Shewanella frigidimarina NCIMB 400 | Sfri_1733 | -145 | 5.2 | ATTAAAACACTTGTATGACT |
Shewanella amazonensis SB2B | Sama_1934 | -120 | 5.6 | ATTTAAACGCCCGTATGATT |
Shewanella loihica PV-4 | Shew_2188 | -130 | 5.5 | ATTAAAACGCCCGTATGATT |
Shewanella pealeana ATCC 700345 | Spea_2448 | -137 | 5.5 | ATTTAAACGACCGTATGATT |
Shewanella halifaxensis HAW-EB4 | Shal_1832 | -136 | 5.5 | ATTTAAACGCTCGTATGATT |
Shewanella piezotolerans WP3 | swp_2289 | -134 | 5.5 | ATTTAAACGCTTGTATGATT |
Shewanella sediminis HAW-EB3 | Ssed_2523 | -132 | 5.7 | ATTAAAACGCCTGTATGAAT |
Shewanella woodyi ATCC 51908 | Swoo_2110 | -134 | 5.7 | ATTAAAACGCCTGTATGAAT |
Position: -101
Score: 5.6 Sequence: ATTAAAACGCTTATTTAAAT
Locus tag: SVI_2741
|
||||
SVI_2741 | -101 | 5.6 | ATTAAAACGCTTATTTAAAT | |
Supported by regulated orthologs from reference regulons | ||||
Ortholog gene name: gltA | ||||
Ortholog function: citrate synthase | ||||
Shewanella oneidensis MR-1 | SO_1926 | -105 | 5.7 | ATTTAAACGCTTATTTAAAT |
Shewanella putrefaciens CN-32 | Sputcn32_2274 | -105 | 5.7 | ATTTAAACGCTTATTTAAAT |
Shewanella sp W3-18-1 | Sputw3181_1734 | -105 | 5.7 | ATTTAAACGCTTATTTAAAT |
Shewanella sp ANA-3 | Shewana3_1705 | -105 | 5.7 | ATTTAAACGCTTATTTAAAT |
Shewanella sp MR-4 | Shewmr4_1630 | -105 | 5.7 | ATTTAAACGCTTATTTAAAT |
Shewanella sp MR-7 | Shewmr7_1705 | -105 | 5.7 | ATTTAAACGCTTATTTAAAT |
Shewanella baltica OS155 | Sbal_2520 | -105 | 5.7 | ATTTAAACGCTTATTTAAAT |
Shewanella denitrificans OS217 | Sden_2189 | -50 | 5.6 | AATTAAACGCTTATTTAAAT |
Shewanella frigidimarina NCIMB 400 | Sfri_2348 | -105 | 5.7 | ATTTAAACGCTTATTTAAAT |
Shewanella amazonensis SB2B | Sama_1422 | -105 | 5.7 | ATTTAAACGCTTATTTAAAT |
Shewanella loihica PV-4 | Shew_1650 | -103 | 5.8 | ATTTAAACACTTATTTAAAT |
Shewanella pealeana ATCC 700345 | Spea_1783 | -101 | 5.7 | ATTTAAACGCTTATTTAAAT |
Shewanella halifaxensis HAW-EB4 | Shal_2494 | -101 | 5.7 | ATTTAAACGCTTATTTAAAT |
Shewanella piezotolerans WP3 | swp_2957 | -101 | 5.7 | ATTTAAACGCTTATTTAAAT |
Shewanella sediminis HAW-EB3 | Ssed_2819 | -100 | 5.8 | ATTTAAACACTTATTTAAAT |
Shewanella woodyi ATCC 51908 | Swoo_1832 | -100 | 5.7 | ATTTAAACGGTTATTTAAAT |
Position: -84
Score: 5.1 Sequence: AATTAATCATTTGTTTAAAA
Locus tag: SVI_2795
|
||||
SVI_2795 | -84 | 5.1 | AATTAATCATTTGTTTAAAA | |
Supported by regulated orthologs from reference regulons | ||||
Ortholog gene name: SO2935 | ||||
Ortholog function: oxidoreductase, short-chain dehydrogenase/reductase family | ||||
Shewanella oneidensis MR-1 | SO_2935 | -86 | 4.5 | TTTCATTCATTTGTTTGAAA |
-73 | 4.5 | TTTGAAACATGCGTTTAGCA | ||
Shewanella putrefaciens CN-32 | Sputcn32_2396 | -86 | 4.5 | TTTCATTCATTTGTTTGAAA |
-73 | 4.5 | TTTGAAACATGCGTTTATCA | ||
Shewanella sp W3-18-1 | Sputw3181_1612 | -86 | 4.5 | TTTCATTCATTTGTTTGAAA |
-73 | 4.5 | TTTGAAACATGCGTTTATCA | ||
Shewanella sp ANA-3 | Shewana3_1528 | -86 | 4.5 | TTTCATTCATTTGTTTGAAA |
-73 | 4.5 | TTTGAAACATGCGTTTAGCA | ||
Shewanella sp MR-4 | Shewmr4_1468 | -86 | 4.5 | TTTCATTCATTTGTTTGAAA |
-73 | 4.5 | TTTGAAACATGCGTTTAGCA | ||
Shewanella sp MR-7 | Shewmr7_1534 | -86 | 4.5 | TTTCATTCATTTGTTTGAAA |
-73 | 4.5 | TTTGAAACATGCGTTTAGCA | ||
Shewanella baltica OS155 | Sbal_2694 | -86 | 4.5 | TTTCATTCATTTGTTTGAAA |
-73 | 4.5 | TTTGAAACATGCGTTTATCA | ||
Shewanella denitrificans OS217 | Sden_2473 | -73 | 5.3 | TTTAAAACAATCGTTTACTT |
Shewanella frigidimarina NCIMB 400 | Sfri_2572 | -86 | 4.6 | TATTAATCATTTGTTTCAAA |
-73 | 5.3 | TTTCAAACGGTCGTTTATTT | ||
Shewanella amazonensis SB2B | Sama_2121 | -73 | 5.1 | TTTTAAACAGCTGTATGACT |
Shewanella loihica PV-4 | Shew_2409 | -87 | 4.4 | AATCAGTCATTTGTTTTAAA |
-74 | 4.4 | TTTTAAACATTCGTTTCAGG | ||
Shewanella pealeana ATCC 700345 | Spea_1649 | -86 | 4.5 | GATTAATCGTTTGTTTAAAA |
-73 | 4.9 | TTTAAAACAGCTGTTTATCA | ||
Shewanella halifaxensis HAW-EB4 | Shal_2614 | -73 | 4.9 | TTTAAAACAGCTGTTTATCA |
Shewanella piezotolerans WP3 | swp_1930 | -86 | 5.1 | AATTAATCGTTTGTTTAAAA |
-73 | 5 | TTTAAAACAGCTGTTTACCA | ||
Shewanella sediminis HAW-EB3 | Ssed_1692 | -86 | 5.1 | AATTAATCATTTGTTTTAAA |
Shewanella woodyi ATCC 51908 | Swoo_2905 | -86 | 5.1 | AATTAATCATTTGTTTTAAA |
Position: -164
Score: 5.3 Sequence: AACCAAACAGATGTTTAAAA
Locus tag: SVI_2906
|
||||
SVI_2906 | -164 | 5.3 | AACCAAACAGATGTTTAAAA | |
Supported by regulated orthologs from reference regulons | ||||
Ortholog gene name: fadI | ||||
Ortholog function: fatty oxidation complex, beta subunit | ||||
Shewanella oneidensis MR-1 | SO_3089 | -163 | 5.4 | AAACAAACAGGTGTTTAAAA |
Shewanella putrefaciens CN-32 | Sputcn32_2460 | -168 | 5.4 | AAACAAACAGGTGTTTAAAA |
Shewanella sp W3-18-1 | Sputw3181_1548 | -168 | 5.4 | AAACAAACAGGTGTTTAAAA |
Shewanella sp ANA-3 | Shewana3_1460 | -167 | 5.4 | AAACAAACAGGTGTTTAAAA |
Shewanella sp MR-4 | Shewmr4_1407 | -167 | 5.4 | AAACAAACAGGTGTTTAAAA |
Shewanella sp MR-7 | Shewmr7_1472 | -167 | 5.4 | AAACAAACAGGTGTTTAAAA |
Shewanella baltica OS155 | Sbal_2761 | -168 | 5.4 | AAACAAACAGGTGTTTAAAA |
Shewanella denitrificans OS217 | Sden_1529 | -141 | 5.4 | AAATAAACGGGTGTTTAAAA |
Shewanella frigidimarina NCIMB 400 | Sfri_2677 | -136 | 5.4 | TTGTAAACGCCTGTTTAAAA |
Shewanella amazonensis SB2B | Sama_2168 | -144 | 5.6 | ATGCAAACAAGTGTTTAAAA |
Shewanella loihica PV-4 | Shew_2426 | -166 | 5.4 | AACCAAACAGGTGTTTAAAA |
Shewanella pealeana ATCC 700345 | Spea_2599 | -148 | 5.4 | AAACAAACAAGTGTTTAAAA |
Shewanella halifaxensis HAW-EB4 | Shal_2671 | -151 | 5.4 | AAACAAACAAGTGTTTAAAA |
Shewanella piezotolerans WP3 | swp_3140 | -154 | 5.4 | AAACAAACAAGTGTTTAAAA |
Shewanella sediminis HAW-EB3 | Ssed_1628 | -183 | 5.4 | AACCAAACAACTGTTTAAAA |
Shewanella woodyi ATCC 51908 | Swoo_3027 | -170 | 5.4 | AACCAAACAAGTGTTTAAAA |
Position: -86
Score: 5.6 Sequence: ATCTAAACATCTGTTTGATT
Locus tag: SVI_3549
|
||||
SVI_3549 | -86 | 5.6 | ATCTAAACATCTGTTTGATT | |
Supported by regulated orthologs from reference regulons | ||||
Ortholog gene name: fadD2 | ||||
Ortholog function: long-chain-fatty-acid--CoA ligase | ||||
Shewanella oneidensis MR-1 | SO_3664 | -63 | 5.6 | ATCTAAACACCCGTTTGATT |
Shewanella putrefaciens CN-32 | Sputcn32_0970 | -66 | 5.5 | ATCTAAACATATGTTTGATT |
Shewanella sp W3-18-1 | Sputw3181_3197 | -65 | 5.5 | ATCTAAACATATGTTTGATT |
Shewanella sp ANA-3 | Shewana3_3231 | -62 | 5.6 | ATCTAAACACTCGTTTGATT |
Shewanella sp MR-4 | Shewmr4_0883 | -62 | 5.6 | ATCTAAACACTCGTTTGATT |
Shewanella sp MR-7 | Shewmr7_3139 | -62 | 5.6 | ATCTAAACACTCGTTTGATT |
Shewanella baltica OS155 | Sbal_0956 | -66 | 5.4 | ATCTAAACACCTGTTTAACT |
Shewanella frigidimarina NCIMB 400 | Sfri_3097 | -55 | 5.5 | ATCTAAACGGACGTTTGATT |
Shewanella loihica PV-4 | Shew_3084 | -130 | 5.3 | TGTTAAACGATTGTTTTATT |
-70 | 5.1 | GTCTAAACACCTGTTTGATT | ||
Shewanella pealeana ATCC 700345 | Spea_3322 | -70 | 5.6 | ATCTAAACGCTTGTTTGATT |
Shewanella halifaxensis HAW-EB4 | Shal_3395 | -62 | 4.8 | gTcTAAACAGCTGTTTgAcT |
Shewanella piezotolerans WP3 | swp_3965 | -66 | 5.7 | ATCTAAACACCTGTTTGATT |
Shewanella sediminis HAW-EB3 | Ssed_3695 | -83 | 5.6 | ATCTAAACGCCTGTTTGATT |
Shewanella woodyi ATCC 51908 | Swoo_3995 | -95 | 5.7 | ATCTAAACACCTGTTTGATT |
Position: -46
Score: 5.2 Sequence: ATTAAAACACCCGTTTAACG
Locus tag: SVI_4248
|
||||
SVI_4248 | -46 | 5.2 | ATTAAAACACCCGTTTAACG | |
Supported by regulated orthologs from reference regulons | ||||
Ortholog gene name: etfD | ||||
Ortholog function: electron-transferring-flavoprotein dehydrogenase | ||||
Shewanella oneidensis MR-1 | SO_4453 | -70 | 5.4 | AATAAAACGCCCGTTTACAA |
Shewanella putrefaciens CN-32 | Sputcn32_0388 | -70 | 5.4 | AATAAAACGCCCGTTTACAA |
Shewanella sp W3-18-1 | Sputw3181_0242 | -70 | 5.4 | AATAAAACGCCCGTTTACAA |
Shewanella sp ANA-3 | Shewana3_0273 | -74 | 5.4 | AATAAAACGCCCGTTTACAA |
Shewanella sp MR-4 | Shewmr4_0272 | -74 | 5.4 | AATAAAACGCCCGTTTACAA |
Shewanella sp MR-7 | Shewmr7_3749 | -74 | 5.4 | AATAAAACGCCCGTTTACAA |
Shewanella baltica OS155 | Sbal_0283 | -70 | 5.4 | AATAAAACGCCCGTTTACAA |
Shewanella amazonensis SB2B | Sama_3523 | -51 | 5.4 | TATAAAACACCCGTTTACAT |
Shewanella loihica PV-4 | Shew_0086 | -47 | 5.7 | AATAAAACACCCGTTTCAAT |
Shewanella pealeana ATCC 700345 | Spea_4121 | -80 | 5.1 | ATTAAAACACCCGTTTATAG |
Shewanella halifaxensis HAW-EB4 | Shal_0121 | -79 | 5.1 | ATTAAAACACCCGTTTATAG |
Shewanella piezotolerans WP3 | swp_5010 | -76 | 5.1 | ATTAAAACACCCGTTTATAG |
Shewanella sediminis HAW-EB3 | Ssed_4403 | -49 | 5.2 | ATTAAAACACCCGTTTAACG |
Shewanella woodyi ATCC 51908 | Swoo_4794 | -45 | 5.2 | ATTAAAACACCCGTTTAACG |
Position: -33
Score: 5.7 Sequence: AGTTAAACAAGCGTTTTAAT
Locus tag: SVI_4286
|
||||
SVI_4286 | -33 | 5.7 | AGTTAAACAAGCGTTTTAAT | |
Supported by regulated orthologs from reference regulons | ||||
Ortholog gene name: SO0080 | ||||
Ortholog function: thioesterase superfamily protein | ||||
Shewanella denitrificans OS217 | Sden_0074 | -20 | 5.3 | TACCAAACGAGCGTTTAAAT |
Shewanella frigidimarina NCIMB 400 | Sfri_3968 | -44 | 6.1 | ATTTAAACAAGCGTTTAATT |
Shewanella amazonensis SB2B | Sama_0073 | -21 | 5.4 | TGTTAAACAATCGTTTGAAT |
Shewanella loihica PV-4 | Shew_3772 | -35 | 5.4 | AACTAAACACTTGTTTGAAA |
Shewanella pealeana ATCC 700345 | Spea_4183 | -70 | 5.9 | AGTTAAACAGCCGTTTAAAT |
Shewanella halifaxensis HAW-EB4 | Shal_0066 | -47 | 5.6 | AATTAAACAGCTGTTTAAAC |
Shewanella piezotolerans WP3 | swp_0119 | -49 | 5.8 | AATCAAACAACCGTTTGAAA |
Shewanella sediminis HAW-EB3 | Ssed_4456 | -32 | 5.8 | AGTTAAACAACCGTTTGAAT |
Shewanella woodyi ATCC 51908 | Swoo_4857 | -50 | 5.7 | AGTCAAACGCATGTTTGAAT |