Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of TyrR regulog to Shewanella baltica OS223

Reference regulog properties
Source regulog: TyrR - Shewanellaceae
Regulator type: Transcription factor
Regulator family: TyrR
Regulation mode: activator
Biological process: Amino acid utilization
Effector: Tyrosine; Phenylalanine
Phylum: Proteobacteria/gamma
Propagated regulon:
Target genome Shewanella baltica OS223
Orthologous TF(s) Sbal223_2866
Regulated genes 25
Built upon 312 sites [see more]
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Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

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© 2009-2020 RegPrecise
Predicted regulatory interactions in Shewanella baltica OS223
Locus tag Position Score Sequence
Position: -159
Score: 4.6
Sequence: GTGTAAATAAAAAATGGCAT
Locus tag: Sbal223_0308
Sbal223_0308 -159 4.6 GTGTAAATAAAAAATGGCAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: tdo
Ortholog function: tryptophan 2,3-dioxygenase
Shewanella oneidensis MR-1 SO_4414 -175 4.5 GTGTAAATAAAAAGTGGCAT
Shewanella putrefaciens CN-32 Sputcn32_0406 -179 4.5 GTGTAAATAAAAAGTGGCAT
Shewanella sp W3-18-1 Sputw3181_0260 -179 4.5 GTGTAAATAAAAAGTGGCAT
Shewanella sp ANA-3 Shewana3_0294 -179 4.5 GTGTAAATAAAAAGTGGCAT
Shewanella sp MR-4 Shewmr4_0294 -179 4.5 GTGTAAATAAAAAGTGGCAT
Shewanella sp MR-7 Shewmr7_3725 -180 4.5 GTGTAAATAAAAAGTGGCAT
Shewanella baltica OS155 Sbal_0303 -159 4.6 GTGTAAATAAAAAATGGCAT
Shewanella denitrificans OS217 Sden_3451 -122 4.3 TCGGAAGTTAAACTTTACAT
Position: -209
Score: 4.8
Sequence: TTGTCAATCAAGCGTTACAT
Locus tag: Sbal223_0904
Sbal223_0904 -209 4.8 TTGTCAATCAAGCGTTACAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: putA
Ortholog function: Proline dehydrogenase (EC 1.5.99.8) (Proline oxidase) / Delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.5.1.12)
Shewanella oneidensis MR-1 SO_3774 -212 4.8 TTGTCAATCAAGCGTTACAT
Shewanella putrefaciens CN-32 Sputcn32_3099 -194 4.8 TTGTCAATTAAGCGTTACAT
Shewanella sp W3-18-1 Sputw3181_0845 -194 4.8 TTGTCAATTAAGCGTTACAT
Shewanella sp ANA-3 Shewana3_0819 -197 4.6 TTGTCAATTGAGCGTTACAT
Shewanella sp MR-4 Shewmr4_3122 -198 4.6 TTGTCAATTGAGCGTTACAT
Shewanella sp MR-7 Shewmr7_0850 -197 4.6 TTGTCAATTGAGCGTTACAT
Shewanella baltica OS155 Sbal_3458 -194 4.8 TTGTCAATCAAGCGTTACAT
Shewanella amazonensis SB2B Sama_2676 -219 4 TTGTCAAGTGGGCGTTACGC
Shewanella sediminis HAW-EB3 Ssed_3846 -109 4 TTGTATACAAAAAATAACAA
Position: -136
Score: 4.8
Sequence: TTGTAAATCAAGTGTTACAT
Locus tag: Sbal223_1173
Sbal223_1173 -136 4.8 TTGTAAATCAAGTGTTACAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: pep1
Ortholog function: Alkaline serine exoprotease A precursor (EC 3.4.21.-)
Shewanella baltica OS155 Sbal_3200 -136 4.8 TTGTAAATCAAGTGTTACAT
Shewanella denitrificans OS217 Sden_1016 -121 4.9 TTGTAAATTTATTGTTACAC
Shewanella woodyi ATCC 51908 Swoo_2373 -127 5 TTGTAAATATGATTTTACAC
Position: -108
Score: 4.5
Sequence: ATGGCAATTGGGATTGACAC
Locus tag: Sbal223_1531
Sbal223_1531 -108 4.5 ATGGCAATTGGGATTGACAC
Supported by regulated orthologs from reference regulons
Ortholog gene name: liuR
Ortholog function: Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family
Shewanella oneidensis MR-1 SO_1898 -105 4.6 GTGGCAACAAGAATTGACAA
Shewanella putrefaciens CN-32 Sputcn32_1720 -108 4.5 ATGGCAATTGGGATTGACAC
Shewanella sp W3-18-1 Sputw3181_2305 -108 4.5 ATGGCAATTGGGATTGACAC
Shewanella sp ANA-3 Shewana3_1673 -105 4.6 GTGGCAACAAGAATTGACAA
Shewanella sp MR-4 Shewmr4_2321 -105 4.6 GTGGCAACAAGAATTGACAA
Shewanella sp MR-7 Shewmr7_2393 -105 4.6 GTGGCAACAAGAATTGACAA
Shewanella baltica OS155 Sbal_2827 -108 4.5 ATGGCAATTGGGATTGACAC
Shewanella denitrificans OS217 Sden_2244 -117 4.2 GTGGAAACAGAATTTAACAC
Shewanella frigidimarina NCIMB 400 Sfri_2726 -117 4.7 GTGGCAAGCAAAATTAACAC
Shewanella amazonensis SB2B Sama_1363 -123 4.2 CTGTAAGCTAAGCCTGACAC
Shewanella pealeana ATCC 700345 Spea_2796 -111 4.4 GTGGCAAGCGCAATTGACAT
Shewanella halifaxensis HAW-EB4 Shal_2901 -110 4.4 GTGGCAAGCGCGATTGACAT
Shewanella piezotolerans WP3 swp_3441 -76 4.2 TTGGCACGCACAATTGACAT
Shewanella woodyi ATCC 51908 Swoo_3222 -129 4.5 CTGGAAAACTTACTTGCCAT
Position: -134
Score: 5.2
Sequence: GTGGAAAGCTAAATTGCCAC
Locus tag: Sbal223_1868
Sbal223_1868 -134 5.2 GTGGAAAGCTAAATTGCCAC
Supported by regulated orthologs from reference regulons
Ortholog gene name: ldh
Ortholog function: Leucine dehydrogenase (EC 1.4.1.9)
Shewanella oneidensis MR-1 SO_2638 -154 5.2 GTGGAAAGCTAGATTGCCAC
Shewanella putrefaciens CN-32 Sputcn32_2238 -155 5.2 GTGGAAAGCTAAATTGCCAC
Shewanella sp W3-18-1 Sputw3181_1771 -155 5.2 GTGGAAAGCTAAATTGCCAC
Shewanella sp ANA-3 Shewana3_1742 -154 5.2 GTGGAAAGCTAGATTGCCAC
Shewanella sp MR-4 Shewmr4_1598 -154 5.2 GTGGAAAGCTAGATTGCCAC
Shewanella sp MR-7 Shewmr7_1673 -154 5.2 GTGGAAAGCTAGATTGCCAC
Shewanella baltica OS155 Sbal_2483 -134 5.2 GTGGAAAGCTAAATTGCCAC
Shewanella denitrificans OS217 Sden_1823 -140 4.9 GTGGCAAGCAAAATTGCCAC
Shewanella frigidimarina NCIMB 400 Sfri_2265 -178 5.2 GTGGCAAGCTAAATTTCCAC
Shewanella amazonensis SB2B Sama_2067 -147 5.1 GTGGAAAGCAAAATTGCCAC
Shewanella loihica PV-4 Shew_1555 -157 5.1 GTGGAAAGCAAAATTGCCAC
Shewanella pealeana ATCC 700345 Spea_2543 -157 4.9 GTGGAAAGCAAAATTGCCAG
Shewanella halifaxensis HAW-EB4 Shal_1711 -157 4.9 GTGGAAAGCAAAATTGCCAG
Shewanella piezotolerans WP3 swp_1857 -158 4.8 GTGGAAAGCAGAATTGCCAC
Shewanella sediminis HAW-EB3 Ssed_1877 -156 5.2 GTGGAAAGCTAAATTGCCAC
Shewanella woodyi ATCC 51908 Swoo_2710 -157 5.1 GTGGAAAGCAAAATTGCCAC
Position: -156
Score: 3.8
Sequence: TTGGCAGACTTTTTTGCCAA
Locus tag: Sbal223_2063
Sbal223_2063 -156 3.8 TTGGCAGACTTTTTTGCCAA
Supported by regulated orthologs from reference regulons