Propagation of TyrR regulog to Shewanella baltica OS223
| Source regulog: | TyrR - Shewanellaceae |
| Regulator type: | Transcription factor |
| Regulator family: | TyrR |
| Regulation mode: | activator |
| Biological process: | Amino acid utilization |
| Effector: | Tyrosine; Phenylalanine |
| Phylum: | Proteobacteria/gamma |
| Propagated regulon: | |
| Target genome | Shewanella baltica OS223 |
| Orthologous TF(s) | Sbal223_2866 |
| Regulated genes | 25 |
Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
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| Locus tag | Position | Score | Sequence | |
|---|---|---|---|---|
|
Position: -159
Score: 4.6 Sequence: GTGTAAATAAAAAATGGCAT
Locus tag: Sbal223_0308
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| Sbal223_0308 | -159 | 4.6 | GTGTAAATAAAAAATGGCAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: tdo | ||||
| Ortholog function: tryptophan 2,3-dioxygenase | ||||
| Shewanella oneidensis MR-1 | SO_4414 | -175 | 4.5 | GTGTAAATAAAAAGTGGCAT |
| Shewanella putrefaciens CN-32 | Sputcn32_0406 | -179 | 4.5 | GTGTAAATAAAAAGTGGCAT |
| Shewanella sp W3-18-1 | Sputw3181_0260 | -179 | 4.5 | GTGTAAATAAAAAGTGGCAT |
| Shewanella sp ANA-3 | Shewana3_0294 | -179 | 4.5 | GTGTAAATAAAAAGTGGCAT |
| Shewanella sp MR-4 | Shewmr4_0294 | -179 | 4.5 | GTGTAAATAAAAAGTGGCAT |
| Shewanella sp MR-7 | Shewmr7_3725 | -180 | 4.5 | GTGTAAATAAAAAGTGGCAT |
| Shewanella baltica OS155 | Sbal_0303 | -159 | 4.6 | GTGTAAATAAAAAATGGCAT |
| Shewanella denitrificans OS217 | Sden_3451 | -122 | 4.3 | TCGGAAGTTAAACTTTACAT |
|
Position: -209
Score: 4.8 Sequence: TTGTCAATCAAGCGTTACAT
Locus tag: Sbal223_0904
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| Sbal223_0904 | -209 | 4.8 | TTGTCAATCAAGCGTTACAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: putA | ||||
| Ortholog function: Proline dehydrogenase (EC 1.5.99.8) (Proline oxidase) / Delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.5.1.12) | ||||
| Shewanella oneidensis MR-1 | SO_3774 | -212 | 4.8 | TTGTCAATCAAGCGTTACAT |
| Shewanella putrefaciens CN-32 | Sputcn32_3099 | -194 | 4.8 | TTGTCAATTAAGCGTTACAT |
| Shewanella sp W3-18-1 | Sputw3181_0845 | -194 | 4.8 | TTGTCAATTAAGCGTTACAT |
| Shewanella sp ANA-3 | Shewana3_0819 | -197 | 4.6 | TTGTCAATTGAGCGTTACAT |
| Shewanella sp MR-4 | Shewmr4_3122 | -198 | 4.6 | TTGTCAATTGAGCGTTACAT |
| Shewanella sp MR-7 | Shewmr7_0850 | -197 | 4.6 | TTGTCAATTGAGCGTTACAT |
| Shewanella baltica OS155 | Sbal_3458 | -194 | 4.8 | TTGTCAATCAAGCGTTACAT |
| Shewanella amazonensis SB2B | Sama_2676 | -219 | 4 | TTGTCAAGTGGGCGTTACGC |
| Shewanella sediminis HAW-EB3 | Ssed_3846 | -109 | 4 | TTGTATACAAAAAATAACAA |
|
Position: -136
Score: 4.8 Sequence: TTGTAAATCAAGTGTTACAT
Locus tag: Sbal223_1173
|
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| Sbal223_1173 | -136 | 4.8 | TTGTAAATCAAGTGTTACAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: pep1 | ||||
| Ortholog function: Alkaline serine exoprotease A precursor (EC 3.4.21.-) | ||||
| Shewanella baltica OS155 | Sbal_3200 | -136 | 4.8 | TTGTAAATCAAGTGTTACAT |
| Shewanella denitrificans OS217 | Sden_1016 | -121 | 4.9 | TTGTAAATTTATTGTTACAC |
| Shewanella woodyi ATCC 51908 | Swoo_2373 | -127 | 5 | TTGTAAATATGATTTTACAC |
|
Position: -108
Score: 4.5 Sequence: ATGGCAATTGGGATTGACAC
Locus tag: Sbal223_1531
|
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| Sbal223_1531 | -108 | 4.5 | ATGGCAATTGGGATTGACAC | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: liuR | ||||
| Ortholog function: Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family | ||||
| Shewanella oneidensis MR-1 | SO_1898 | -105 | 4.6 | GTGGCAACAAGAATTGACAA |
| Shewanella putrefaciens CN-32 | Sputcn32_1720 | -108 | 4.5 | ATGGCAATTGGGATTGACAC |
| Shewanella sp W3-18-1 | Sputw3181_2305 | -108 | 4.5 | ATGGCAATTGGGATTGACAC |
| Shewanella sp ANA-3 | Shewana3_1673 | -105 | 4.6 | GTGGCAACAAGAATTGACAA |
| Shewanella sp MR-4 | Shewmr4_2321 | -105 | 4.6 | GTGGCAACAAGAATTGACAA |
| Shewanella sp MR-7 | Shewmr7_2393 | -105 | 4.6 | GTGGCAACAAGAATTGACAA |
| Shewanella baltica OS155 | Sbal_2827 | -108 | 4.5 | ATGGCAATTGGGATTGACAC |
| Shewanella denitrificans OS217 | Sden_2244 | -117 | 4.2 | GTGGAAACAGAATTTAACAC |
| Shewanella frigidimarina NCIMB 400 | Sfri_2726 | -117 | 4.7 | GTGGCAAGCAAAATTAACAC |
| Shewanella amazonensis SB2B | Sama_1363 | -123 | 4.2 | CTGTAAGCTAAGCCTGACAC |
| Shewanella pealeana ATCC 700345 | Spea_2796 | -111 | 4.4 | GTGGCAAGCGCAATTGACAT |
| Shewanella halifaxensis HAW-EB4 | Shal_2901 | -110 | 4.4 | GTGGCAAGCGCGATTGACAT |
| Shewanella piezotolerans WP3 | swp_3441 | -76 | 4.2 | TTGGCACGCACAATTGACAT |
| Shewanella woodyi ATCC 51908 | Swoo_3222 | -129 | 4.5 | CTGGAAAACTTACTTGCCAT |
|
Position: -134
Score: 5.2 Sequence: GTGGAAAGCTAAATTGCCAC
Locus tag: Sbal223_1868
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| Sbal223_1868 | -134 | 5.2 | GTGGAAAGCTAAATTGCCAC | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ldh | ||||
| Ortholog function: Leucine dehydrogenase (EC 1.4.1.9) | ||||
| Shewanella oneidensis MR-1 | SO_2638 | -154 | 5.2 | GTGGAAAGCTAGATTGCCAC |
| Shewanella putrefaciens CN-32 | Sputcn32_2238 | -155 | 5.2 | GTGGAAAGCTAAATTGCCAC |
| Shewanella sp W3-18-1 | Sputw3181_1771 | -155 | 5.2 | GTGGAAAGCTAAATTGCCAC |
| Shewanella sp ANA-3 | Shewana3_1742 | -154 | 5.2 | GTGGAAAGCTAGATTGCCAC |
| Shewanella sp MR-4 | Shewmr4_1598 | -154 | 5.2 | GTGGAAAGCTAGATTGCCAC |
| Shewanella sp MR-7 | Shewmr7_1673 | -154 | 5.2 | GTGGAAAGCTAGATTGCCAC |
| Shewanella baltica OS155 | Sbal_2483 | -134 | 5.2 | GTGGAAAGCTAAATTGCCAC |
| Shewanella denitrificans OS217 | Sden_1823 | -140 | 4.9 | GTGGCAAGCAAAATTGCCAC |
| Shewanella frigidimarina NCIMB 400 | Sfri_2265 | -178 | 5.2 | GTGGCAAGCTAAATTTCCAC |
| Shewanella amazonensis SB2B | Sama_2067 | -147 | 5.1 | GTGGAAAGCAAAATTGCCAC |
| Shewanella loihica PV-4 | Shew_1555 | -157 | 5.1 | GTGGAAAGCAAAATTGCCAC |
| Shewanella pealeana ATCC 700345 | Spea_2543 | -157 | 4.9 | GTGGAAAGCAAAATTGCCAG |
| Shewanella halifaxensis HAW-EB4 | Shal_1711 | -157 | 4.9 | GTGGAAAGCAAAATTGCCAG |
| Shewanella piezotolerans WP3 | swp_1857 | -158 | 4.8 | GTGGAAAGCAGAATTGCCAC |
| Shewanella sediminis HAW-EB3 | Ssed_1877 | -156 | 5.2 | GTGGAAAGCTAAATTGCCAC |
| Shewanella woodyi ATCC 51908 | Swoo_2710 | -157 | 5.1 | GTGGAAAGCAAAATTGCCAC |
|
Position: -156
Score: 3.8 Sequence: TTGGCAGACTTTTTTGCCAA
Locus tag: Sbal223_2063
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| Sbal223_2063 | -156 | 3.8 | TTGGCAGACTTTTTTGCCAA | |
| Supported by regulated orthologs from reference regulons | ||||