Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of FadR regulog to Pseudoalteromonas atlantica T6c

Reference regulog properties
Source regulog: FadR - Shewanellaceae
Regulator type: Transcription factor
Regulator family: GntR/Others
Regulation mode: repressor (activator)
Biological process: Fatty acid degradation
Effector: Palmitoyl-CoA; Oleoyl-CoA
Phylum: Proteobacteria/gamma
Propagated regulon:
Target genome Pseudoalteromonas atlantica T6c
Orthologous TF(s) Patl_2794
Regulated genes 2
Built upon 101 sites [see more]
Predicted regulatory interactions in Pseudoalteromonas atlantica T6c
Locus tag Position Score Sequence
Position: -46
Score: 4.7
Sequence: TACAGGTCAGACCACTT
Locus tag: Patl_1663
Patl_1663 -46 4.7 TACAGGTCAGACCACTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: fadI
Ortholog function: FadI component of anaerobic fatty acid oxidation complex
Shewanella oneidensis MR-1 SO_3089 -109 5.2 TAATGGTCAGACCTGTT
Shewanella putrefaciens CN-32 Sputcn32_2460 -114 5.2 TAATGGTCAGACCTGTT
Shewanella sp W3 Error

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

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