Propagation of ArgR regulog to Psychromonas ingrahamii 37
| Source regulog: | ArgR - Shewanellaceae |
| Regulator type: | Transcription factor |
| Regulator family: | ArgR |
| Regulation mode: | repressor (activator) |
| Biological process: | Arginine degradation; Arginine biosynthesis |
| Effector: | Arginine |
| Phylum: | Proteobacteria/gamma |
| Propagated regulon: | |
| Target genome | Psychromonas ingrahamii 37 |
| Orthologous TF(s) | Ping_0295 |
| Regulated genes | 10 |
| Locus tag | Position | Score | Sequence | |
|---|---|---|---|---|
|
Position: -164
Score: 3.6 Sequence: ACTGCTTTAATAAGCTAT
Position: -113
Score: 3.7 Sequence: GTTAAGTAAGTATTCATT
Position: -102
Score: 3.7 Sequence: ATTCATTATTATTGCATA
Position: -92
Score: 4.9 Sequence: ATTGCATAAATAATCAAA
Locus tag: Ping_0228
|
||||
| Ping_0228 | -164 | 3.6 | ACTGCTTTAATAAGCTAT | |
| -113 | 3.7 | GTTAAGTAAGTATTCATT | ||
| -102 | 3.7 | ATTCATTATTATTGCATA | ||
| -92 | 4.9 | ATTGCATAAATAATCAAA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: argC | ||||
| Ortholog function: N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38) | ||||
| Shewanella oneidensis MR-1 | SO_0275 | -327 | 3.6 | ATTGAAATATTAAGTAGT |
| -249 | 4 | TAAAAATATATATTCACA | ||
| -127 | 3.7 | AGTGAATAAAATAACAAG | ||
| Shewanella putrefaciens CN-32 | Sputcn32_3717 | -192 | 4.2 | TATGAAAATAAATTAAAA |
| -57 | 3.8 | AGTGAATAAAATAACAAC | ||
| Shewanella sp W3-18-1 | Sputw3181_3860 | -193 | 4.2 | TATGAAAATAAATTAAAA |
| -180 | 4 | TAAAAATATATATTCACA | ||
| -57 | 4 | AGTGAATAAAATAACAAT | ||
| Shewanella sp ANA-3 | Shewana3_3905 | -357 | 3.7 | ACTGATTTTTCAGTCTTT |
| -327 | 4.4 | ACTGAGTTATTAAGCAGT | ||
| -249 | 4 | TAAAAATATATATTCACA | ||
| Shewanella sp MR-4 | Shewmr4_3709 | -327 | 4.4 | ACTGAGTTATTAAGCAGT |
| -249 | 4 | TAAAAATATATATTCACA | ||
| Shewanella sp MR-7 | Shewmr7_0236 | -327 | 4.4 | ACTGAGTTATTAAGCAGT |
| -249 | 4 | TAAAAATATATATTCACA | ||
| Shewanella baltica OS155 | Sbal_4124 | -471 | 4.2 | ATTCAATATAAATGCGAA |
| -252 | 4 | TAAAAATATATATTCACA | ||
| -130 | 3.8 | AGTGAATAAAATAACAAC | ||
| Shewanella denitrificans OS217 | Sden_0250 | -235 | 4.3 | AATAAATATGTATTCACA |
| -214 | 3.7 | ATTGCATAACAATTTGAT | ||
| -145 | 4.3 | ATCGAATATAAAAGCACA | ||
| Shewanella amazonensis SB2B | Sama_0256 | -241 | 3.7 | AATAGATATTCATGCATA |
| Shewanella loihica PV-4 | Shew_0202 | -249 | 3.7 | TAAAAATATCTATTCAAT |
| -228 | 3.5 | ATTGCATAATTAGTTTGT | ||
| Shewanella pealeana ATCC 700345 | Spea_0227 | -266 | 3.8 | CCCAAATATATATTCAAA |
| Shewanella halifaxensis HAW-EB4 | Shal_4093 | -267 | 4.5 | CCTAAATATATATTCAAA |
| Shewanella piezotolerans WP3 | swp_2055 | -266 | 4.5 | CCTAAATATATATTCAAA |
| Shewanella sediminis HAW-EB3 | Ssed_4276 | -256 | 4 | GTAAAATATATATTCAAA |
| -235 | 3.5 | ATTGCATAATTAGTTTGT | ||
| Shewanella woodyi ATCC 51908 | Swoo_0329 | -423 | 3.5 | TTTGCATTCAAAACCAAG |
| -263 | 4 | GTAAAATATATATTCAAA | ||
|
Position: -96
Score: 5.1 Sequence: ATTGAATAGTTATGCATT
Locus tag: Ping_0295
|
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| Ping_0295 | -96 | 5.1 | ATTGAATAGTTATGCATT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: argR | ||||
| Ortholog function: Arginine metabolism transcriptional regulator ArgR | ||||
| Shewanella oneidensis MR-1 | SO_0769 | -93 | 5.5 | ATTGCATTTTTATTCAGT |
| Shewanella putrefaciens CN-32 | Sputcn32_3220 | -96 | 5.5 | AGTGAATTTTTATTCAAC |
| Shewanella sp W3-18-1 | Sputw3181_0721 | -96 | 5.5 | AGTGAATTTTTATTCAAC |
| Shewanella sp ANA-3 | Shewana3_3510 | -93 | 5.5 | ATTGCATTTTTATTCAGT |
| Shewanella sp MR-4 | Shewmr4_3340 | -93 | 5.5 | ATTGCATTTTTATTCAGT |
| Shewanella sp MR-7 | Shewmr7_0613 | -93 | 5.2 | ACTGCATTTTTATTCATC |
| Shewanella baltica OS155 | Sbal_0608 | -96 | 5.5 | AGTGAATTTTTATTCAAC |
| Shewanella denitrificans OS217 | Sden_0825 | -89 | 5.7 | AGTGAATTTTTATTCACT |
| Shewanella frigidimarina NCIMB 400 | Sfri_0640 | -104 | 5.6 | AATGAATTTTTATTCAAT |
| Shewanella amazonensis SB2B | Sama_0671 | -98 | 5.3 | TCTGCATTTTTATTCACA |
| Shewanella loihica PV-4 | Shew_0866 | -95 | 5.1 | CCTGAATTTTTATTCACA |
| Shewanella pealeana ATCC 700345 | Spea_0849 | -95 | 5.5 | AATGAATTTTTATTCAGA |
| Shewanella halifaxensis HAW-EB4 | Shal_0902 | -95 | 5.5 | AATGAATTTTTATTCACA |
| Shewanella piezotolerans WP3 | swp_4101 | -95 | 5.3 | CATGAATTTTTATTCAAT |
| Shewanella sediminis HAW-EB3 | Ssed_0951 | -95 | 5.2 | GTTGCATTTTTATTCATA |
| Shewanella woodyi ATCC 51908 | Swoo_1001 | -95 | 5 | ATTGCATTCTTATTCATT |
|
Position: -254
Score: 5.1 Sequence: GCTGCATTAAAATGCAGT
Locus tag: Ping_2119
|
||||
| Ping_2119 | -254 | 5.1 | GCTGCATTAAAATGCAGT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: SO0762 | ||||
| Ortholog function: Isochorismate hydrolase (EC 3.3.2.1) | ||||
| Shewanella oneidensis MR-1 | SO_0762 | -195 | 4.6 | TGTGCCTAAAAATGCACC |
| Shewanella sp ANA-3 | Shewana3_3533 | -234 | 3.9 | ATTGATTTTAAATAAATA |
| -195 | 4.1 | ACCGATTAAAAATGCACC | ||
| Shewanella sp MR-4 | Shewmr4_3363 | -248 | 3.8 | CCAGAATTTTAATTTATT |
| -194 | 4 | TTCGATTAAAAATGCACC | ||
| Shewanella sp MR-7 | Shewmr7_0590 | -265 | 3.8 | CCAGAATTTTAATTTATT |
| -211 | 4 | TTCGATTAAAAATGCACC | ||
| Shewanella frigidimarina NCIMB 400 | Sfri_0893 | -114 | 4.4 | TCTGAGTGAACATTCATA |
| Shewanella loihica PV-4 | Shew_0845 | -139 | 5 | GCTGCATATAAATGCACC |
| Shewanella pealeana ATCC 700345 | Spea_0832 | -152 | 4.9 | CGTGCATATAAATGCACC |
| Shewanella halifaxensis HAW-EB4 | Shal_0887 | -155 | 4.4 | AACGCATAAAAATGCACC |
| Shewanella piezotolerans WP3 | swp_3957 | -151 | 4.5 | TATAAATATAAATGCACC |
| Shewanella woodyi ATCC 51908 | Swoo_0978 | -125 | 4.2 | TGCGCATAAAAACTCAAT |
|
Position: -147
Score: 4 Sequence: GGTGCGGTTTAATGCACT
Position: -75
Score: 5.5 Sequence: TTTGAATATTTATTCATT
Locus tag: Ping_3377
|
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| Ping_3377 | -147 | 4 | GGTGCGGTTTAATGCACT | |
| -75 | 5.5 | TTTGAATATTTATTCATT | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: oadG | ||||
| Ortholog function: Oxaloacetate decarboxylase gamma chain (EC 4.1.1.3) | ||||
| Shewanella putrefaciens CN-32 | Sputcn32_1029 | -265 | 4.3 | TATCCTTATAAATTCACT |
| -154 | 4.3 | TGTGAATATTTAGTCTTT | ||
| -133 | 4 | TGTGATTTTATATGCTGC | ||
| Shewanella sp W3-18-1 | Sputw3181_3136 | -265 | 4.3 | TATCCTTATAAATTCACT |
| -154 | 4.3 | TGTGAATATTTAGTCTTT | ||
| -133 | 4 | TGTGATTTTATATGCTGC | ||
| Shewanella sp MR-7 | Shewmr7_3069 | -322 | 3.9 | ATTCAATTTAAAGGCCAT |
| -176 | 3.7 | AACGAATGTTCATTTAAT | ||
| Shewanella baltica OS155 | Sbal_1024 | -139 | 4.9 | TGTGATTTTTTATTCAAA |
| Shewanella frigidimarina NCIMB 400 | Sfri_1065 | -182 | 3.8 | GTTGAATAATCGTTGAGT |
| -165 | 4.6 | TTTGAATATTTATGCTTT | ||
| Shewanella amazonensis SB2B | Sama_1051 | -352 | 4.1 | ACTGCATATACTTCCACT |
| -307 | 3.6 | TCTGCCCATGAATGCAGT | ||
| Shewanella loihica PV-4 | Shew_1219 | -377 | 4.3 | ATTGCATAATCTTGCATA |
| -331 | 4 | ATTCAATTTTCAAGCAGA | ||
| Shewanella pealeana ATCC 700345 | Spea_1198 | -73 | 4.2 | TGTGAATGAATAGTGAAT |
| -62 | 4.1 | AGTGAATATTTATTTTTA | ||
| Shewanella halifaxensis HAW-EB4 | Shal_1235 | -63 | 4.8 | GGTGAATATTTATTGAGT |
| -43 | 4.1 | CATCCATGTTTATTCACA | ||
| Shewanella piezotolerans WP3 | swp_1378 | -157 | 3.6 | TATCAACAGAAATGCATA |
| -136 | 4.4 | TGTGAATAAATAGTGATT | ||
| Shewanella sediminis HAW-EB3 | Ssed_1320 | -322 | 4.4 | ACTGCATAACTTTTCATT |
| Shewanella woodyi ATCC 51908 | Swoo_3337 | -110 | 4.4 | AATGAATAAAAAGTTATT |