Propagation of MalR regulog to Bacillus licheniformis DSM 13
| Source regulog: | MalR - Bacillales |
| Regulator type: | Transcription factor |
| Regulator family: | CitB |
| Regulation mode: | activator |
| Biological process: | Malate utilization |
| Effector: | MalK, sensor histidine kinase (malate) |
| Phylum: | Firmicutes |
| Propagated regulon: | |
| Target genome | Bacillus licheniformis DSM 13 |
| Orthologous TF(s) | BLi03335 |
| Regulated genes | 4 |
| Locus tag | Position | Score | Sequence | |
|---|---|---|---|---|
|
Position: -87
Score: 5.3 Sequence: GCAGTTTTTTT-(8)-AAAATTTGAAT
Position: -83
Score: 5.6 Sequence: TTTTTTTAATA-(4)-AAAATTTGAAT
Locus tag: BLi00780
|
||||
| BLi00780 | -87 | 5.3 | GCAGTTTTTTT-(8)-AAAATTTGAAT | |
| -83 | 5.6 | TTTTTTTAATA-(4)-AAAATTTGAAT | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: yflS | ||||
| Ortholog function: Putative malate transporter | ||||
| Bacillus amyloliquefaciens FZB42 | RBAM_007730 | -89 | 5.2 | TTTTTTAATTA-(9)-TTTATTAACTT |
| Bacillus halodurans C-125 | BH3327 | -63 | 7.4 | TTGCTCTTTTA-(6)-CTACTTTTTTT |
| -46 | 7.7 | CTACTTTTTTT-(6)-TTAGGTTAATC | ||
| Bacillus subtilis subsp. subtilis str. 168 | BSU07570 | -91 | 5.2 | TTTTTTAATTA-(9)-TTTATTAACTT |
|
Position: -122
Score: 7.5 Sequence: TCTCTTTTTCC-(13)-TTAATTTAATT
Position: -99
Score: 7.4 Sequence: TTTAATTTAAT-(10)-TTATTTTAATT
Position: -98
Score: 9.4 Sequence: TTAATTTAATT-(9)-TTATTTTAATT
Locus tag: BLi03342
|
||||
| BLi03342 | -122 | 7.5 | TCTCTTTTTCC-(13)-TTAATTTAATT | |
| -99 | 7.4 | TTTAATTTAAT-(10)-TTATTTTAATT | ||
| -98 | 9.4 | TTAATTTAATT-(9)-TTATTTTAATT | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: maeN | ||||
| Ortholog function: Malate Na(+) symporter | ||||
| Bacillus licheniformis DSM 13 | BLi03342 | -98 | 9.4 | TTAATTTAATT-(9)-TTATTTTAATT |
| Bacillus pumilus SAFR-032 | BPUM_2827 | -96 | 8.3 | TTATTTTACTT-(9)-TTAATTTAGTT |
| Bacillus subtilis subsp. subtilis str. 168 | BSU31580 | -96 | 7.3 | TTAATTTAATT-(9)-TTTTTTAACTT |
|
Position: 0
Score: 6.1 Sequence: TTGAGCTTTTT-(2)-ATATTTTAATC
Position: 9
Score: 6.4 Sequence: TTAAATATTTT-(13)-CCAATATTTTT
Position: 10
Score: 5.9 Sequence: TAAATATTTTA-(12)-CCAATATTTTT
Position: 12
Score: 5.3 Sequence: AATATTTTAAT-(13)-ATATTTTTTGT
Position: 13
Score: 6.3 Sequence: ATATTTTAATC-(12)-ATATTTTTTGT
Position: 18
Score: 5.5 Sequence: TTAATCCTCCT-(11)-TTTTTGTTATT
Locus tag: BLi03952
|
||||
| BLi03952 | 0 | 6.1 | TTGAGCTTTTT-(2)-ATATTTTAATC | |
| 9 | 6.4 | TTAAATATTTT-(13)-CCAATATTTTT | ||
| 10 | 5.9 | TAAATATTTTA-(12)-CCAATATTTTT | ||
| 12 | 5.3 | AATATTTTAAT-(13)-ATATTTTTTGT | ||
| 13 | 6.3 | ATATTTTAATC-(12)-ATATTTTTTGT | ||
| 18 | 5.5 | TTAATCCTCCT-(11)-TTTTTGTTATT | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ywkB | ||||
| Ortholog function: Malate permease | ||||
| Bacillus amyloliquefaciens FZB42 | RBAM_034200 | -206 | -0.8 | AACTTAAAAAA-(10)-AAATTAAGTAA |
| Bacillus licheniformis DSM 13 | BLi03952 | -242 | -0.8 | AACTTAATTAA-(10)-AAATTAACTAA |
| Bacillus pumilus SAFR-032 | BPUM_3347 | -209 | 0.5 | AAATTAAATAA-(10)-AAATTATCTAA |
|
Position: -292
Score: 5.1 Sequence: CAAGTGTTTTT-(5)-TGAATCCTTTT
Position: -290
Score: 5.1 Sequence: AGTGTTTTTTT-(3)-TGAATCCTTTT
Position: -289
Score: 5.8 Sequence: GTGTTTTTTTT-(2)-TGAATCCTTTT
Position: -286
Score: 6.4 Sequence: TTTTTTTTATT-(2)-ATCCTTTTTGC
Position: -281
Score: 7.4 Sequence: TTTATTGAATC-(13)-TTAATGTAATT
Position: -277
Score: 6.4 Sequence: TTGAATCCTTT-(9)-TTAATGTAATT
Position: -276
Score: 7.1 Sequence: TGAATCCTTTT-(8)-TTAATGTAATT
Position: -273
Score: 6.8 Sequence: ATCCTTTTTGC-(5)-TTAATGTAATT
Position: -257
Score: 7.1 Sequence: TTAATGTAATT-(2)-AAAACTTAATT
Position: -239
Score: 5.9 Sequence: TTAATTAAGAA-(10)-TTAACTAATTT
Position: -218
Score: 6.3 Sequence: TTAACTAATTT-(8)-TGAATTTTGAC
Position: -217
Score: 5.8 Sequence: TAACTAATTTT-(7)-TGAATTTTGAC
Position: -214
Score: 6 Sequence: CTAATTTTCAT-(4)-TGAATTTTGAC
Position: -213
Score: 5.8 Sequence: TAATTTTCATC-(3)-TGAATTTTGAC
Position: -199
Score: 5.1 Sequence: TGAATTTTGAC-(11)-TAAAATGACTT
Position: -168
Score: 5.6 Sequence: TTACTGTAGTC-(9)-TAAATAGGTTT
Position: -148
Score: 5.7 Sequence: TAAATAGGTTT-(9)-TTCAGTTTTTT
Position: -102
Score: 5.1 Sequence: TTACATATTTG-(6)-CTACATGTGTA
Position: -65
Score: 5.4 Sequence: ATATTCTATAT-(3)-TTACCGTATTT
Position: -61
Score: 5.7 Sequence: TCTATATTGTT-(7)-TTTATTTCACT
Position: -60
Score: 5.4 Sequence: CTATATTGTTT-(6)-TTTATTTCACT
Position: -59
Score: 5.4 Sequence: TATATTGTTTA-(5)-TTTATTTCACT
Position: -52
Score: 5.4 Sequence: TTTACCGTATT-(3)-TTCACTTCATT
Position: -51
Score: 6.5 Sequence: TTACCGTATTT-(2)-TTCACTTCATT
Position: -47
Score: 5.7 Sequence: CGTATTTATTT-(7)-TTAACATTTTA
Position: -46
Score: 5.7 Sequence: GTATTTATTTC-(6)-TTAACATTTTA
Position: -43
Score: 6.1 Sequence: TTTATTTCACT-(3)-TTAACATTTTA
Position: -42
Score: 6.1 Sequence: TTATTTCACTT-(2)-TTAACATTTTA
Position: -38
Score: 5.1 Sequence: TTCACTTCATT-(13)-AGAAGGTAATT
Position: -29
Score: 5.2 Sequence: TTAACATTTTA-(13)-TTAGTGTGAAC
Locus tag: BLi03953
|
||||
| BLi03953 | -292 | 5.1 | CAAGTGTTTTT-(5)-TGAATCCTTTT | |
| -290 | 5.1 | AGTGTTTTTTT-(3)-TGAATCCTTTT | ||
| -289 | 5.8 | GTGTTTTTTTT-(2)-TGAATCCTTTT | ||
| -286 | 6.4 | TTTTTTTTATT-(2)-ATCCTTTTTGC | ||
| -281 | 7.4 | TTTATTGAATC-(13)-TTAATGTAATT | ||
| -277 | 6.4 | TTGAATCCTTT-(9)-TTAATGTAATT | ||
| -276 | 7.1 | TGAATCCTTTT-(8)-TTAATGTAATT | ||
| -273 | 6.8 | ATCCTTTTTGC-(5)-TTAATGTAATT | ||
| -257 | 7.1 | TTAATGTAATT-(2)-AAAACTTAATT | ||
| -239 | 5.9 | TTAATTAAGAA-(10)-TTAACTAATTT | ||
| -218 | 6.3 | TTAACTAATTT-(8)-TGAATTTTGAC | ||
| -217 | 5.8 | TAACTAATTTT-(7)-TGAATTTTGAC | ||
| -214 | 6 | CTAATTTTCAT-(4)-TGAATTTTGAC | ||
| -213 | 5.8 | TAATTTTCATC-(3)-TGAATTTTGAC | ||
| -199 | 5.1 | TGAATTTTGAC-(11)-TAAAATGACTT | ||
| -168 | 5.6 | TTACTGTAGTC-(9)-TAAATAGGTTT | ||
| -148 | 5.7 | TAAATAGGTTT-(9)-TTCAGTTTTTT | ||
| -102 | 5.1 | TTACATATTTG-(6)-CTACATGTGTA | ||
| -65 | 5.4 | ATATTCTATAT-(3)-TTACCGTATTT | ||
| -61 | 5.7 | TCTATATTGTT-(7)-TTTATTTCACT | ||
| -60 | 5.4 | CTATATTGTTT-(6)-TTTATTTCACT | ||
| -59 | 5.4 | TATATTGTTTA-(5)-TTTATTTCACT | ||
| -52 | 5.4 | TTTACCGTATT-(3)-TTCACTTCATT | ||
| -51 | 6.5 | TTACCGTATTT-(2)-TTCACTTCATT | ||
| -47 | 5.7 | CGTATTTATTT-(7)-TTAACATTTTA | ||
| -46 | 5.7 | GTATTTATTTC-(6)-TTAACATTTTA | ||
| -43 | 6.1 | TTTATTTCACT-(3)-TTAACATTTTA | ||
| -42 | 6.1 | TTATTTCACTT-(2)-TTAACATTTTA | ||
| -38 | 5.1 | TTCACTTCATT-(13)-AGAAGGTAATT | ||
| -29 | 5.2 | TTAACATTTTA-(13)-TTAGTGTGAAC | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ywkA | ||||
| Ortholog function: NAD-dependent malate dehydrogenase (EC 1.1.1.38) | ||||
| Bacillus amyloliquefaciens FZB42 | RBAM_034210 | -206 | -0.8 | AACTTAAAAAA-(10)-AAATTAAGTAA |
| Bacillus licheniformis DSM 13 | BLi03953 | -242 | -0.8 | AACTTAATTAA-(10)-AAATTAACTAA |
| Bacillus pumilus SAFR-032 | BPUM_3348 | -209 | 0.5 | AAATTAAATAA-(10)-AAATTATCTAA |
| Bacillus subtilis subsp. subtilis str. 168 | BSU37050 | -156 | -1 | AATTTAAATAA-(10)-AAATTAAGTAA |