Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of MalR regulog to Bacillus licheniformis DSM 13

Reference regulog properties
Source regulog: MalR - Bacillales
Regulator type: Transcription factor
Regulator family: CitB
Regulation mode: activator
Biological process: Malate utilization
Effector: MalK, sensor histidine kinase (malate)
Phylum: Firmicutes
Propagated regulon:
Target genome Bacillus licheniformis DSM 13
Orthologous TF(s) BLi03335
Regulated genes 4
Built upon 11 sites [see more]
Predicted regulatory interactions in Bacillus licheniformis DSM 13
Locus tag Position Score Sequence
Position: -87
Score: 5.3
Sequence: GCAGTTTTTTT-(8)-AAAATTTGAAT
Position: -83
Score: 5.6
Sequence: TTTTTTTAATA-(4)-AAAATTTGAAT
Locus tag: BLi00780
BLi00780 -87 5.3 GCAGTTTTTTT-(8)-AAAATTTGAAT
-83 5.6 TTTTTTTAATA-(4)-AAAATTTGAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: yflS
Ortholog function: Putative malate transporter
Bacillus amyloliquefaciens FZB42 RBAM_007730 -89 5.2 TTTTTTAATTA-(9)-TTTATTAACTT
Bacillus halodurans C-125 BH3327 -63 7.4 TTGCTCTTTTA-(6)-CTACTTTTTTT
-46 7.7 CTACTTTTTTT-(6)-TTAGGTTAATC
Bacillus subtilis subsp. subtilis str. 168 BSU07570 -91 5.2 TTTTTTAATTA-(9)-TTTATTAACTT
Position: -122
Score: 7.5
Sequence: TCTCTTTTTCC-(13)-TTAATTTAATT
Position: -99
Score: 7.4
Sequence: TTTAATTTAAT-(10)-TTATTTTAATT
Position: -98
Score: 9.4
Sequence: TTAATTTAATT-(9)-TTATTTTAATT
Locus tag: BLi03342
BLi03342 -122 7.5 TCTCTTTTTCC-(13)-TTAATTTAATT
-99 7.4 TTTAATTTAAT-(10)-TTATTTTAATT
-98 9.4 TTAATTTAATT-(9)-TTATTTTAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: maeN
Ortholog function: Malate Na(+) symporter
Bacillus licheniformis DSM 13 BLi03342 -98 9.4 TTAATTTAATT-(9)-TTATTTTAATT
Bacillus pumilus SAFR-032 BPUM_2827 -96 8.3 TTATTTTACTT-(9)-TTAATTTAGTT
Bacillus subtilis subsp. subtilis str. 168 BSU31580 -96 7.3 TTAATTTAATT-(9)-TTTTTTAACTT
Position: 0
Score: 6.1
Sequence: TTGAGCTTTTT-(2)-ATATTTTAATC
Position: 9
Score: 6.4
Sequence: TTAAATATTTT-(13)-CCAATATTTTT
Position: 10
Score: 5.9
Sequence: TAAATATTTTA-(12)-CCAATATTTTT
Position: 12
Score: 5.3
Sequence: AATATTTTAAT-(13)-ATATTTTTTGT
Position: 13
Score: 6.3
Sequence: ATATTTTAATC-(12)-ATATTTTTTGT
Position: 18
Score: 5.5
Sequence: TTAATCCTCCT-(11)-TTTTTGTTATT
Locus tag: BLi03952
BLi03952 0 6.1 TTGAGCTTTTT-(2)-ATATTTTAATC
9 6.4 TTAAATATTTT-(13)-CCAATATTTTT
10 5.9 TAAATATTTTA-(12)-CCAATATTTTT
12 5.3 AATATTTTAAT-(13)-ATATTTTTTGT
13 6.3 ATATTTTAATC-(12)-ATATTTTTTGT
18 5.5 TTAATCCTCCT-(11)-TTTTTGTTATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ywkB
Ortholog function: Malate permease
Bacillus amyloliquefaciens FZB42 RBAM_034200 -206 -0.8 AACTTAAAAAA-(10)-AAATTAAGTAA
Bacillus licheniformis DSM 13 BLi03952 -242 -0.8 AACTTAATTAA-(10)-AAATTAACTAA
Bacillus pumilus SAFR-032 BPUM_3347 -209 0.5 AAATTAAATAA-(10)-AAATTATCTAA
Position: -292
Score: 5.1
Sequence: CAAGTGTTTTT-(5)-TGAATCCTTTT
Position: -290
Score: 5.1
Sequence: AGTGTTTTTTT-(3)-TGAATCCTTTT
Position: -289
Score: 5.8
Sequence: GTGTTTTTTTT-(2)-TGAATCCTTTT
Position: -286
Score: 6.4
Sequence: TTTTTTTTATT-(2)-ATCCTTTTTGC
Position: -281
Score: 7.4
Sequence: TTTATTGAATC-(13)-TTAATGTAATT
Position: -277
Score: 6.4
Sequence: TTGAATCCTTT-(9)-TTAATGTAATT
Position: -276
Score: 7.1
Sequence: TGAATCCTTTT-(8)-TTAATGTAATT
Position: -273
Score: 6.8
Sequence: ATCCTTTTTGC-(5)-TTAATGTAATT
Position: -257
Score: 7.1
Sequence: TTAATGTAATT-(2)-AAAACTTAATT
Position: -239
Score: 5.9
Sequence: TTAATTAAGAA-(10)-TTAACTAATTT
Position: -218
Score: 6.3
Sequence: TTAACTAATTT-(8)-TGAATTTTGAC
Position: -217
Score: 5.8
Sequence: TAACTAATTTT-(7)-TGAATTTTGAC
Position: -214
Score: 6
Sequence: CTAATTTTCAT-(4)-TGAATTTTGAC
Position: -213
Score: 5.8
Sequence: TAATTTTCATC-(3)-TGAATTTTGAC
Position: -199
Score: 5.1
Sequence: TGAATTTTGAC-(11)-TAAAATGACTT
Position: -168
Score: 5.6
Sequence: TTACTGTAGTC-(9)-TAAATAGGTTT
Position: -148
Score: 5.7
Sequence: TAAATAGGTTT-(9)-TTCAGTTTTTT
Position: -102
Score: 5.1
Sequence: TTACATATTTG-(6)-CTACATGTGTA
Position: -65
Score: 5.4
Sequence: ATATTCTATAT-(3)-TTACCGTATTT
Position: -61
Score: 5.7
Sequence: TCTATATTGTT-(7)-TTTATTTCACT
Position: -60
Score: 5.4
Sequence: CTATATTGTTT-(6)-TTTATTTCACT
Position: -59
Score: 5.4
Sequence: TATATTGTTTA-(5)-TTTATTTCACT
Position: -52
Score: 5.4
Sequence: TTTACCGTATT-(3)-TTCACTTCATT
Position: -51
Score: 6.5
Sequence: TTACCGTATTT-(2)-TTCACTTCATT
Position: -47
Score: 5.7
Sequence: CGTATTTATTT-(7)-TTAACATTTTA
Position: -46
Score: 5.7
Sequence: GTATTTATTTC-(6)-TTAACATTTTA
Position: -43
Score: 6.1
Sequence: TTTATTTCACT-(3)-TTAACATTTTA
Position: -42
Score: 6.1
Sequence: TTATTTCACTT-(2)-TTAACATTTTA
Position: -38
Score: 5.1
Sequence: TTCACTTCATT-(13)-AGAAGGTAATT
Position: -29
Score: 5.2
Sequence: TTAACATTTTA-(13)-TTAGTGTGAAC
Locus tag: BLi03953
BLi03953 -292 5.1 CAAGTGTTTTT-(5)-TGAATCCTTTT
-290 5.1 AGTGTTTTTTT-(3)-TGAATCCTTTT
-289 5.8 GTGTTTTTTTT-(2)-TGAATCCTTTT
-286 6.4 TTTTTTTTATT-(2)-ATCCTTTTTGC
-281 7.4 TTTATTGAATC-(13)-TTAATGTAATT
-277 6.4 TTGAATCCTTT-(9)-TTAATGTAATT
-276 7.1 TGAATCCTTTT-(8)-TTAATGTAATT
-273 6.8 ATCCTTTTTGC-(5)-TTAATGTAATT
-257 7.1 TTAATGTAATT-(2)-AAAACTTAATT
-239 5.9 TTAATTAAGAA-(10)-TTAACTAATTT
-218 6.3 TTAACTAATTT-(8)-TGAATTTTGAC
-217 5.8 TAACTAATTTT-(7)-TGAATTTTGAC
-214 6 CTAATTTTCAT-(4)-TGAATTTTGAC
-213 5.8 TAATTTTCATC-(3)-TGAATTTTGAC
-199 5.1 TGAATTTTGAC-(11)-TAAAATGACTT
-168 5.6 TTACTGTAGTC-(9)-TAAATAGGTTT
-148 5.7 TAAATAGGTTT-(9)-TTCAGTTTTTT
-102 5.1 TTACATATTTG-(6)-CTACATGTGTA
-65 5.4 ATATTCTATAT-(3)-TTACCGTATTT
-61 5.7 TCTATATTGTT-(7)-TTTATTTCACT
-60 5.4 CTATATTGTTT-(6)-TTTATTTCACT
-59 5.4 TATATTGTTTA-(5)-TTTATTTCACT
-52 5.4 TTTACCGTATT-(3)-TTCACTTCATT
-51 6.5 TTACCGTATTT-(2)-TTCACTTCATT
-47 5.7 CGTATTTATTT-(7)-TTAACATTTTA
-46 5.7 GTATTTATTTC-(6)-TTAACATTTTA
-43 6.1 TTTATTTCACT-(3)-TTAACATTTTA
-42 6.1 TTATTTCACTT-(2)-TTAACATTTTA
-38 5.1 TTCACTTCATT-(13)-AGAAGGTAATT
-29 5.2 TTAACATTTTA-(13)-TTAGTGTGAAC
Supported by regulated orthologs from reference regulons
Ortholog gene name: ywkA
Ortholog function: NAD-dependent malate dehydrogenase (EC 1.1.1.38)
Bacillus amyloliquefaciens FZB42 RBAM_034210 -206 -0.8 AACTTAAAAAA-(10)-AAATTAAGTAA
Bacillus licheniformis DSM 13 BLi03953 -242 -0.8 AACTTAATTAA-(10)-AAATTAACTAA
Bacillus pumilus SAFR-032 BPUM_3348 -209 0.5 AAATTAAATAA-(10)-AAATTATCTAA
Bacillus subtilis subsp. subtilis str. 168 BSU37050 -156 -1 AATTTAAATAA-(10)-AAATTAAGTAA
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