Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
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Propagation of YdfF regulog to Bacillus licheniformis DSM 13

Reference regulog properties
Source regulog: YdfF - Bacillales
Regulator type: Transcription factor
Regulator family: ArsR
Regulation mode: repressor
Biological process:
Effector:
Phylum: Firmicutes
Propagated regulon:
Target genome Bacillus licheniformis DSM 13
Orthologous TF(s) BLi03718
Regulated genes 3
Built upon 10 sites [see more]
Predicted regulatory interactions in Bacillus licheniformis DSM 13
Locus tag Position Score Sequence
Position: -56
Score: 5.7
Sequence: TTCGATGAGCATCGAA
Locus tag: BLi00469
BLi00469 -56 5.7 TTCGATGAGCATCGAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ABC3713
Ortholog function: Probable carboxyvinyl-carboxyphosphonate phosphorylmutase (EC 2.7.8.23)
Bacillus clausii KSM-K16 ABC3713 -50 4.9 TTCGATGTTGATGGAA
Bacillus licheniformis DSM 13 BLi00469 -56 5.7 TTCGATGAGCATCGAA
Position: -59
Score: 5.6
Sequence: TTCGATGTTAATTGAA
Locus tag: BLi03717
BLi03717 -59 5.6 TTCGATGTTAATTGAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ydfE
Ortholog function: Putative flavoprotein
Bacillus clausii KSM-K16 ABC1173 -68 5.8 TTCGATTATAATGGAA
Bacillus halodurans C-125 BH0392 -66 5.7 TTCGATGATAGTTGAA
Bacillus licheniformis DSM 13 BLi03717 -59 5.6 TTCGATGTTAATTGAA
Bacillus subtilis subsp. subtilis str. 168 BSU05380 -66 5.7 TTCGATGATAGTTGAA
Position: -45
Score: 5.6
Sequence: TTCAATTAACATCGAA
Locus tag: BLi03718
BLi03718 -45 5.6 TTCAATTAACATCGAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ydfF
Ortholog function: Transcriptional regulator, ArsR family
Bacillus clausii KSM-K16 ABC1174 -43 5.8 TTCCATTATAATCGAA
Bacillus halodurans C-125 BH0391 -41 5.7 TTCAACTATCATCGAA
Bacillus licheniformis DSM 13 BLi03718 -45 5.6 TTCAATTAACATCGAA
Bacillus subtilis subsp. subtilis str. 168 BSU05390 -39 5.7 TTCAACTATCATCGAA
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