Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of Fnr regulog to Bacillus licheniformis DSM 13

Reference regulog properties
Source regulog: Fnr - Bacillales
Regulator type: Transcription factor
Regulator family: CRP
Regulation mode: activator
Biological process: Anaerobic metabolism
Effector: Oxygen
Phylum: Firmicutes
Propagated regulon:
Target genome Bacillus licheniformis DSM 13
Orthologous TF(s) BLi02080
Regulated genes 6
Built upon 39 sites [see more]
Predicted regulatory interactions in Bacillus licheniformis DSM 13
Locus tag Position Score Sequence
Position: -80
Score: 5.4
Sequence: TGTGAAGTATTGCACA
Position: -57
Score: 5.4
Sequence: TGTGAAGAATTTCACA
Locus tag: BLi00366
BLi00366 -80 5.4 TGTGAAGTATTGCACA
-57 5.4 TGTGAAGAATTTCACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ldh
Ortholog function: L-lactate dehydrogenase (EC 1.1.1.27)
Bacillus subtilis subsp. subtilis str. 168 BSU03050 -83 4.7 TGTGAAGTGTTGCACA
-60 6 TGTGAAATACTTCACA
Bacillus amyloliquefaciens FZB42 RBAM_003290 -80 5.4 TGTGAAGTATTGCACA
-57 6 TGTGAAATACTTCACA
Bacillus pumilus SAFR-032 BPUM_0277 -77 5.4 TGTGAAGTATTGCACA
-54 6 TGTGAAATACTTCACA
Bacillus licheniformis DSM 13 BLi00366 -80 5.4 TGTGAAGTATTGCACA
-57 5.4 TGTGAAGAATTTCACA
Geobacillus kaustophilus HTA426 GK0475 -40 4.9 TGTGAATATATTCACA
Bacillus halodurans C-125 BH3937 -274 6 TGTGAAATATTTCACA
-217 6 TGTGAAATATTTCACA
-42 4.8 TGTGAAAATATTCACA
Bacillus clausii KSM-K16 ABC2872 -66 5.4 TGTGAAATAATGCACA
-43 5.4 TGTGAATAATTTCACA
Oceanobacillus iheyensis HTE831 OB3279 -66 6 TGTGAAATATTTCACA
Position: -73
Score: 5.7
Sequence: TGTGAATTAAATCACT
Locus tag: BLi02078
BLi02078 -73 5.7 TGTGAATTAAATCACT
Supported by regulated orthologs from reference regulons
Ortholog gene name: arfM
Ortholog function: Anaerobic respiration and fermentation modulator
Bacillus subtilis subsp. subtilis str. 168 BSU37290 -73 5.6 TGTGAAATACATCACT
Bacillus licheniformis DSM 13 BLi02078 -73 5.7 TGTGAATTAAATCACT
Bacillus halodurans C-125 BH0229 -74 4.8 TGTGAACCATGTCACT
Position: -92
Score: 5.7
Sequence: AGTGATTTAATTCACA
Locus tag: BLi02079
BLi02079 -92 5.7 AGTGATTTAATTCACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ywiC
Ortholog function: Putative integral inner membrane protein
Bacillus licheniformis DSM 13 BLi02079 -92 5.7 AGTGATTTAATTCACA
Position: -95
Score: 6
Sequence: TGTGACGTAATTCACA
Locus tag: BLi02081
BLi02081 -95 6 TGTGACGTAATTCACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: narK
Ortholog function: Nitrate/nitrite transporter
Bacillus subtilis subsp. subtilis str. 168 BSU37320 -80 6 TGTGATGTAATTCACA
Bacillus amyloliquefaciens FZB42 RBAM_034470 -79 6 TGTGATGTAATTCACA
Bacillus licheniformis DSM 13 BLi02081 -95 6 TGTGACGTAATTCACA
Geobacillus kaustophilus HTA426 GK0766 -68 4.7 TGTGATCAACCTCACA
Position: -87
Score: 5.3
Sequence: TGTGAAATGTTTCACA
Locus tag: BLi04135
BLi04135 -87 5.3 TGTGAAATGTTTCACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ywcJ
Ortholog function: Formate/nitrite family of transporters
Bacillus subtilis subsp. subtilis str. 168 BSU38060 -64 6 TGTGAAATACTTCACA
Bacillus licheniformis DSM 13 BLi04135 -87 5.3 TGTGAAATGTTTCACA
Anoxybacillus flavithermus WK1 Aflv_1436 -41 5.3 TGTGAAAAACATCACA
Position: -90
Score: 5.3
Sequence: TGTGAAATGTTTCACA
Locus tag: BLi04290
BLi04290 -90 5.3 TGTGAAATGTTTCACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: adh
Ortholog function: NAD-dependent aldehyde dehydrogenase domain and Fe-dependent alcohol dehydrogense domain
Bacillus licheniformis DSM 13 BLi04290 -90 5.3 TGTGAAATGTTTCACA