Propagation of CcpA regulog to Bacillus licheniformis DSM 13
| Source regulog: | CcpA - Bacillales |
| Regulator type: | Transcription factor |
| Regulator family: | LacI |
| Regulation mode: | |
| Biological process: | Carbon catabolism |
| Effector: | HPr, phosphocarrier protein |
| Phylum: | Firmicutes |
| Propagated regulon: | |
| Target genome | Bacillus licheniformis DSM 13 |
| Orthologous TF(s) | BLi03125 |
| Regulated genes | 88 |
Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
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| Locus tag | Position | Score | Sequence | |
|---|---|---|---|---|
|
Position: -31
Score: 4.5 Sequence: TTGTAAACGAATACAA
Locus tag: BLi00172
|
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| BLi00172 | -31 | 4.5 | TTGTAAACGAATACAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: mrp | ||||
| Ortholog function: Scaffold protein for [4Fe-4S] cluster assembly ApbC, MRP-like | ||||
| Anoxybacillus flavithermus WK1 | Aflv_0142 | -34 | 4 | GTGAAACCGAATACAT |
| Bacillus amyloliquefaciens FZB42 | RBAM_001800 | -32 | 4.1 | TTGTAAACGAATACAC |
| Bacillus cereus ATCC 14579 | BC0168 | -84 | 4.5 | ATGTAAACGCATTTAT |
| Bacillus licheniformis DSM 13 | BLi00172 | -31 | 4.5 | TTGTAAACGAATACAA |
| Bacillus pumilus SAFR-032 | BPUM_0145 | -35 | 4.6 | TTGTAAACGAATTCAA |
| Bacillus subtilis subsp. subtilis str. 168 | BSU01540 | -32 | 4.1 | TTGTAAACGAATACAC |
|
Position: -33
Score: 4.9 Sequence: ATGTAAGCGGATTCAT
Locus tag: BLi00221
|
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| BLi00221 | -33 | 4.9 | ATGTAAGCGGATTCAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: citM | ||||
| Ortholog function: Mg(2+) Citrate transporter (TC 2.A.11.1.1) | ||||
| Bacillus amyloliquefaciens FZB42 | RBAM_007810 | -33 | 5.1 | ATGTAAGCGTATTCAT |
| Bacillus licheniformis DSM 13 | BLi00221 | -33 | 4.9 | ATGTAAGCGGATTCAT |
| Bacillus pumilus SAFR-032 | BPUM_0710 | -33 | 5.2 | ATGAAAGCGTATACAA |
| Bacillus subtilis subsp. subtilis str. 168 | BSU07610 | -32 | 4.9 | ATGTAAGCGGATTCAT |
|
Position: -208
Score: 4.9 Sequence: TTGAAAACGCTTATAT
Locus tag: BLi00274
|
||||
| BLi00274 | -208 | 4.9 | TTGAAAACGCTTATAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: glsA1 | ||||
| Ortholog function: Glutaminase (EC 3.5.1.2) | ||||
| Bacillus amyloliquefaciens FZB42 | RBAM_002800 | -62 | 5 | TTGAAAACGTTTTCCA |
| Bacillus halodurans C-125 | BH2717 | -32 | 5.3 | ATGTAAACGCTTTCAT |
| Bacillus licheniformis DSM 13 | BLi00274 | -208 | 4.9 | TTGAAAACGCTTATAT |
| Bacillus pumilus SAFR-032 | BPUM_0244 | -216 | 5.2 | ATGTAAGCGTTTTCTT |
| Bacillus subtilis subsp. subtilis str. 168 | BSU02430 | -81 | 4.4 | ATGAAAGCGTTTAACG |
|
Position: -49
Score: 4.7 Sequence: TTGAAAGCGTTTGATT
Locus tag: BLi00330
|
||||
| BLi00330 | -49 | 4.7 | TTGAAAGCGTTTGATT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: glcD | ||||
| Ortholog function: Glycolate dehydrogenase (EC 1.1.99.14), subunit GlcD | ||||
| Anoxybacillus flavithermus WK1 | Aflv_2029 | -94 | 4.7 | ATGTAAACGTTTTATT |
| Bacillus amyloliquefaciens FZB42 | RBAM_025750 | -37 | 4.5 | ATGAAAACGCTTTTCT |
| Bacillus licheniformis DSM 13 | BLi00330 | -96 | 4.3 | TTGAAAACGGGTTCTT |
| -49 | 4.7 | TTGAAAGCGTTTGATT | ||
| Bacillus subtilis subsp. subtilis str. 168 | BSU28680 | -33 | 4.6 | TTGAAAGCGTTTTTTG |
|
Position: -41
Score: 4.7 Sequence: TTGTAAACGCTGTCTT
Locus tag: BLi00439
|
||||
| BLi00439 | -41 | 4.7 | TTGTAAACGCTGTCTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: rbsB | ||||
| Ortholog function: ABC-type sugar transport system, periplasmic component | ||||
| Bacillus halodurans C-125 | BH3448 | -19 | 4.6 | TTGAAAGGGGTTTCAT |
| Bacillus licheniformis DSM 13 | BLi00439 | -41 | 4.7 | TTGTAAACGCTGTCTT |
| Paenibacillus sp. JDR-2 | Pjdr2_0664 | -35 | 4.7 | ATGAAAGCGGTTTTTT |
|
Position: -72
Score: 4.8 Sequence: TTGAAAGCGTTTTTAG
Locus tag: BLi00447
|
||||
| BLi00447 | -72 | 4.8 | TTGAAAGCGTTTTTAG | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ganA | ||||
| Ortholog function: Beta-galactosidase (EC 3.2.1.23) | ||||
| Bacillus clausii KSM-K16 | ABC3516 | -37 | 4.6 | AAGAAAGCGGTTACTT |
| Bacillus halodurans C-125 | BH2022 | -55 | 4.4 | TATAAAACGCTTTCAT |
| Bacillus licheniformis DSM 13 | BLi00447 | -72 | 4.8 | TTGAAAGCGTTTTTAG |
| Bacillus pumilus SAFR-032 | BPUM_3617 | -51 | 4.8 | AAGAAAGCGTTTTCTT |
| Bacillus subtilis subsp. subtilis str. 168 | BSU34130 | -39 | 5 | TTTAAAGCGCTTTCAT |
|
Position: -41
Score: 4.9 Sequence: TTGTAAGCGCTTTATA
Locus tag: BLi00488
|
||||
| BLi00488 | -41 | 4.9 | TTGTAAGCGCTTTATA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: sdcS | ||||
| Ortholog function: Sodium:dicarboxylate cotransporter; di- and tricarboxylate transporters | ||||
| Bacillus clausii KSM-K16 | ABC3994 | -32 | 4.7 | AAGAAAACGCTTTCAG |
| Bacillus licheniformis DSM 13 | BLi00488 | -41 | 4.9 | TTGTAAGCGCTTTATA |
| Oceanobacillus iheyensis HTE831 | OB2540 | -82 | 4.5 | ATGTAAACGCAACCAA |
|
Position: -94
Score: 4.4 Sequence: CTGTAAGCGTTTTAAT
Locus tag: BLi00505
|
||||
| BLi00505 | -94 | 4.4 | CTGTAAGCGTTTTAAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: mtlA | ||||
| Ortholog function: PTS family mannitol-permease II, BC component | ||||
| Anoxybacillus flavithermus WK1 | Aflv_1566 | -58 | 4.5 | CTGTAAGCGCTTTAAT |
| Bacillus amyloliquefaciens FZB42 | RBAM_004230 | -96 | 4.6 | TTGTAAGCGTTTTATG |
| Bacillus halodurans C-125 | BH3854 | -39 | 4.3 | ATGAGAGCGCTTTATT |
| Bacillus licheniformis DSM 13 | BLi00505 | -94 | 4.4 | CTGTAAGCGTTTTAAT |
| Bacillus pumilus SAFR-032 | BPUM_0369 | -106 | 4.1 | GTGAAAGCGTTTTACG |
| Bacillus subtilis subsp. subtilis str. 168 | BSU03981 | -95 | 4 | CTGTAAGCGTTTTAAC |
| Geobacillus kaustophilus HTA426 | GK1948 | -54 | 4.8 | TTGTAAGCGTTTTAAG |
| Oceanobacillus iheyensis HTE831 | OB2603 | -75 | 4.4 | TTGTAAGCGGATTCCT |
| Paenibacillus sp. JDR-2 | Pjdr2_6226 | -33 | 4.1 | AAGAAAGCGATTTTAT |
|
Position: -96
Score: 4.2 Sequence: TTGACAGCGTTTTATG
Locus tag: BLi00508
|
||||
| BLi00508 | -96 | 4.2 | TTGACAGCGTTTTATG | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: mtlR | ||||
| Ortholog function: Mannitol operon activator, BglG family | ||||
| Anoxybacillus flavithermus WK1 | Aflv_1564 | -65 | 4.4 | TTGAAAGCGGATGAAT |
| Bacillus amyloliquefaciens FZB42 | RBAM_004390 | -96 | 5 | TTGAAAGCGTTTTATA |
| Bacillus halodurans C-125 | BH3853 | -39 | 4.3 | ATGAGAGCGCTTTATT |
| Bacillus licheniformis DSM 13 | BLi00508 | -96 | 4.2 | TTGACAGCGTTTTATG |
| Bacillus pumilus SAFR-032 | BPUM_0388 | -60 | 5 | TTGAAAGCGTTTTATA |
| Bacillus subtilis subsp. subtilis str. 168 | BSU04160 | -99 | 5 | TTGAAAGCGTTTTATA |
| Oceanobacillus iheyensis HTE831 | OB2602 | -75 | 4.4 | TTGTAAGCGGATTCCT |
| Paenibacillus sp. JDR-2 | Pjdr2_6225 | -33 | 4.1 | AAGAAAGCGATTTTAT |
|
Position: -108
Score: 4.9 Sequence: ATGATAACGCTTACAA
Locus tag: BLi00639
|
||||
| BLi00639 | -108 | 4.9 | ATGATAACGCTTACAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: iolF | ||||
| Ortholog function: Minor myo-inositol transporter | ||||
| Bacillus amyloliquefaciens FZB42 | RBAM_036730 | -172 | 5.1 | ATGAAAACGTTGTCAT |
| Bacillus licheniformis DSM 13 | BLi04246 | -176 | 4.7 | ATGGAAACGTTGTCAT |
| Bacillus licheniformis DSM 13 | BLi00639 | -108 | 4.9 | ATGATAACGCTTACAA |
| Bacillus subtilis subsp. subtilis str. 168 | BSU39710 | -172 | 5.1 | ATGAAAACGTTGTCAT |
| Oceanobacillus iheyensis HTE831 | OB0494 | -82 | 4.5 | ATGAAAACGAATTCAG |
|
Position: -200
Score: 5.5 Sequence: ATGAAAGCGTTTACAA
Locus tag: BLi00730
|
||||
| BLi00730 | -200 | 5.5 | ATGAAAGCGTTTACAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: gatC | ||||
| Ortholog function: Aspartyl (EC 6.3.5.6)/Glutamyl (EC 6.3.5.7) -tRNA amidotransferase subunit C | ||||
| Bacillus amyloliquefaciens FZB42 | RBAM_007070 | -196 | 5 | ATGAAAACGCTACCAA |
| Bacillus licheniformis DSM 13 | BLi00730 | -200 | 5.5 | ATGAAAGCGTTTACAA |
| Bacillus pumilus SAFR-032 | BPUM_0644 | -215 | 5 | ATGTAAGCGCTACCAA |
| Bacillus subtilis subsp. subtilis str. 168 | BSU06670 | -205 | 4.4 | AATAAAACGCTTTCAA |
|
Position: -101
Score: 4.8 Sequence: TTGAAAGCGCTACAAA
Locus tag: BLi00796
|
||||
| BLi00796 | -101 | 4.8 | TTGAAAGCGCTACAAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: treP | ||||
| Ortholog function: PTS system, trehalose-specific enzyme II, BC component (EC 2.7.1.69) | ||||
| Bacillus amyloliquefaciens FZB42 | RBAM_007970 | 318 | 4 | GTGAAAACGCTTGCGG |
| Bacillus cereus ATCC 14579 | BC0631 | 234 | 4.4 | TTGATAACGCTTGCAG |
| Bacillus halodurans C-125 | BH2216 | 136 | 4.4 | TTGAAAGCCTTGACAT |
| 318 | 4.4 | GTGAAAACGCTTGCTG | ||
| Bacillus licheniformis DSM 13 | BLi00796 | 318 | 4.6 | GTGAAAACGCTTGCAG |
| Bacillus subtilis subsp. subtilis str. 168 | BSU07800 | 318 | 4.6 | GTGAAAACGCTTGCAG |
|
Position: -51
Score: 5.1 Sequence: TTGAAAGCGCTTTTAT
Locus tag: BLi00853
|
||||
| BLi00853 | -51 | 5.1 | TTGAAAGCGCTTTTAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: acoR | ||||
| Ortholog function: Transcriptional activator of acetoin dehydrogenase operon AcoR | ||||
| Bacillus amyloliquefaciens FZB42 | RBAM_008340 | -67 | 5 | TTGAAAGCGCTTTATT |
| Bacillus cereus ATCC 14579 | BC2766 | -78 | 5 | TTGAAAACGCTTTTAT |
| Bacillus halodurans C-125 | BH1826 | -117 | 4.7 | TTGTTAGCGCTTTCTT |
| Bacillus licheniformis DSM 13 | BLi00853 | -51 | 5.1 | TTGAAAGCGCTTTTAT |
| Bacillus pumilus SAFR-032 | BPUM_0455 | -59 | 5.1 | TTGAAAGCGCTTTTAT |
| Bacillus subtilis subsp. subtilis str. 168 | BSU08100 | -67 | 5 | TTGAAAGCGCTTTATT |
|
Position: -29
Score: 4.8 Sequence: TTGTAAACGCTTATAA
Locus tag: BLi00855
|
||||
| BLi00855 | -29 | 4.8 | TTGTAAACGCTTATAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: glvA | ||||
| Ortholog function: Maltose-6'-phosphate glucosidase (EC 3.2.1.122) | ||||
| Bacillus amyloliquefaciens FZB42 | RBAM_008360 | -29 | 4.8 | ATGTAAACGTTATCAG |
| Bacillus clausii KSM-K16 | ABC3581 | -54 | 4.8 | TTGAAAGCGCTGCCTT |
| Bacillus licheniformis DSM 13 | BLi00855 | -29 | 4.8 | TTGTAAACGCTTATAA |
| Bacillus subtilis subsp. subtilis str. 168 | BSU08180 | -28 | 5.1 | TTGTAAACGTTATCAA |
|
Position: -207
Score: 4.5 Sequence: TTGACAACGCTTTCAC
Locus tag: BLi00994
|
||||
| BLi00994 | -207 | 4.5 | TTGACAACGCTTTCAC | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: glpF | ||||
| Ortholog function: Glycerol uptake facilitator protein | ||||
| Bacillus cereus ATCC 14579 | BC1034 | -191 | 4.7 | TTGACACCGCTTTCAT |
| Bacillus clausii KSM-K16 | ABC3383 | -198 | 4.2 | ATGTATCCGTTTACAA |
| Bacillus licheniformis DSM 13 | BLi00994 | -207 | 4.5 | TTGACAACGCTTTCAC |
| Bacillus pumilus SAFR-032 | BPUM_0882 | -191 | 4.9 | TTGACAACGTTTTCAT |
| Bacillus subtilis subsp. subtilis str. 168 | BSU09280 | -182 | 4.7 | TTGACACCGCTTTCAT |
| Geobacillus kaustophilus HTA426 | GK1359 | -206 | 5.1 | TTGACAGCGTTTTCAA |
| Oceanobacillus iheyensis HTE831 | OB2476 | -164 | 4.7 | TTGACAACGCTTTCAG |
|
Position: -34
Score: 4.6 Sequence: GTTAAAGCGCTTACAT
Locus tag: BLi01052
|
||||
| BLi01052 | -34 | 4.6 | GTTAAAGCGCTTACAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: msmX | ||||
| Ortholog function: Maltose/maltodextrin transport ATP-binding protein (EC 3.6.3.19) | ||||
| Anoxybacillus flavithermus WK1 | Aflv_2303 | -30 | 4.4 | ATGAAATCGATTACAT |
| Bacillus clausii KSM-K16 | ABC1514 | -48 | 4.6 | ATGAAAGGGGTTACAA |
| Bacillus halodurans C-125 | BH1140 | -47 | 4.6 | TTGTAAGCGCTACAAT |
| Bacillus licheniformis DSM 13 | BLi01052 | -34 | 4.6 | GTTAAAGCGCTTACAT |
| Bacillus pumilus SAFR-032 | BPUM_0922 | -41 | 4.1 | AGTGAAGCGCTTTCAA |
| Oceanobacillus iheyensis HTE831 | OB1134 | -37 | 4.1 | ATGTAATCGTTAACAC |
|
Position: -27
Score: 4.5 Sequence: TTGTAAACGTATTCAC
Locus tag: BLi01062
|
||||
| BLi01062 | -27 | 4.5 | TTGTAAACGTATTCAC | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: yhaR | ||||
| Ortholog function: Enoyl-CoA hydratase (EC 4.2.1.17) | ||||
| Bacillus amyloliquefaciens FZB42 | RBAM_010120 | -29 | 4.9 | ATGTAAGCGGATTCAA |
| Bacillus licheniformis DSM 13 | BLi01062 | -27 | 4.5 | TTGTAAACGTATTCAC |
| Bacillus subtilis subsp. subtilis str. 168 | BSU09880 | -29 | 4.6 | AAGTAAGCGCATACAT |
|
Position: -75
Score: 4.2 Sequence: TTGAAAACTTTTACCT
Locus tag: BLi01139
|
||||
| BLi01139 | -75 | 4.2 | TTGAAAACTTTTACCT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: msmR | ||||
| Ortholog function: Transcriptional regulator of alpha-galactoside utilization, LacI family | ||||
| Bacillus amyloliquefaciens FZB42 | RBAM_027180 | -91 | 4.8 | TTGAAAACGCTTACTC |
| Bacillus halodurans C-125 | BH2227 | -95 | 4.5 | TTGAAAACGCTTACCC |
| Bacillus licheniformis DSM 13 | BLi01139 | -75 | 4.2 | TTGAAAACTTTTACCT |
| Bacillus pumilus SAFR-032 | BPUM_1754 | -78 | 4.4 | TTGAAAGCGCTTTACC |
| Bacillus subtilis subsp. subtilis str. 168 | BSU30260 | -86 | 4.8 | TTGTAACCGCTTACTT |
|
Position: -51
Score: 4.9 Sequence: ATGAAAGCGCTTTTTA
Locus tag: BLi01140
|
||||
| BLi01140 | -51 | 4.9 | ATGAAAGCGCTTTTTA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: msmE | ||||
| Ortholog function: Multiple sugar ABC transporter, substrate-binding protein | ||||
| Bacillus amyloliquefaciens FZB42 | RBAM_027190 | -91 | 4.8 | TTGAAAACGCTTACTC |
| Bacillus halodurans C-125 | BH2226 | -95 | 4.5 | TTGAAAACGCTTACCC |
| Bacillus licheniformis DSM 13 | BLi01140 | -51 | 4.9 | ATGAAAGCGCTTTTTA |
| Bacillus pumilus SAFR-032 | BPUM_1753 | -78 | 4.4 | TTGAAAGCGCTTTACC |
| Bacillus subtilis subsp. subtilis str. 168 | BSU30270 | -86 | 4.8 | TTGTAACCGCTTACTT |
|
Position: -33
Score: 5.1 Sequence: ATGAAAGCGATTACAA
Locus tag: BLi01241
|
||||
| BLi01241 | -33 | 5.1 | ATGAAAGCGATTACAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: tctC | ||||
| Ortholog function: Tricarboxylate transport protein TctC | ||||
| Bacillus clausii KSM-K16 | ABC1013 | -71 | 5.2 | TTGAAAACGGTTACAT |
| Bacillus licheniformis DSM 13 | BLi01241 | -33 | 5.1 | ATGAAAGCGATTACAA |
| Oceanobacillus iheyensis HTE831 | OB3249 | -71 | 5.2 | TTGAAAACGGTTACAA |
|
Position: -41
Score: 5.4 Sequence: ATGAAAGCGTTTTCTA
Locus tag: BLi01359
|
||||
| BLi01359 | -41 | 5.4 | ATGAAAGCGTTTTCTA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: exuT | ||||
| Ortholog function: Hexuronate transporter | ||||
| Bacillus amyloliquefaciens FZB42 | RBAM_018010 | 0 | 4.3 | ATGAAAGCGGTTCTAG |
| Bacillus subtilis subsp. subtilis str. 168 | BSU12360 | -123 | 4.8 | ATGACAGCGTTAACAT |
| -45 | 4.5 | ATGTTAACGTTAACAT | ||
|
Position: -30
Score: 4.8 Sequence: ATGTAAGCACTTACAA
Locus tag: BLi01368
|
||||
| BLi01368 | -30 | 4.8 | ATGTAAGCACTTACAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: rhiL | ||||
| Ortholog function: Putatuve rhamnogalacturonides ABC transporter, substrate-binding protein | ||||
| Bacillus licheniformis DSM 13 | BLi01368 | -37 | 4.5 | GAGTAAGCGTTTACAA |
| -30 | 4.8 | ATGTAAGCACTTACAA | ||
| Bacillus subtilis subsp. subtilis str. 168 | BSU06970 | -32 | 4.8 | ATGTAAGCACTTACAT |
| -20 | 4.6 | AAGTAAGCGCTTACAG | ||
| Paenibacillus sp. JDR-2 | Pjdr2_3535 | -41 | 4.6 | ATGTAAACACTTACAT |
|
Position: -58
Score: 5.1 Sequence: ATGTAAGCGTTTTAAA
Locus tag: BLi01384
|
||||
| BLi01384 | -58 | 5.1 | ATGTAAGCGTTTTAAA | |
| Supported by regulated orthologs from reference regulons | ||||