Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of CcpA regulog to Bacillus licheniformis DSM 13

Reference regulog properties
Source regulog: CcpA - Bacillales
Regulator type: Transcription factor
Regulator family: LacI
Regulation mode:
Biological process: Carbon catabolism
Effector: HPr, phosphocarrier protein
Phylum: Firmicutes
Propagated regulon:
Target genome Bacillus licheniformis DSM 13
Orthologous TF(s) BLi03125
Regulated genes 88
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Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
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Predicted regulatory interactions in Bacillus licheniformis DSM 13
Locus tag Position Score Sequence
Position: -31
Score: 4.5
Sequence: TTGTAAACGAATACAA
Locus tag: BLi00172
BLi00172 -31 4.5 TTGTAAACGAATACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: mrp
Ortholog function: Scaffold protein for [4Fe-4S] cluster assembly ApbC, MRP-like
Anoxybacillus flavithermus WK1 Aflv_0142 -34 4 GTGAAACCGAATACAT
Bacillus amyloliquefaciens FZB42 RBAM_001800 -32 4.1 TTGTAAACGAATACAC
Bacillus cereus ATCC 14579 BC0168 -84 4.5 ATGTAAACGCATTTAT
Bacillus licheniformis DSM 13 BLi00172 -31 4.5 TTGTAAACGAATACAA
Bacillus pumilus SAFR-032 BPUM_0145 -35 4.6 TTGTAAACGAATTCAA
Bacillus subtilis subsp. subtilis str. 168 BSU01540 -32 4.1 TTGTAAACGAATACAC
Position: -33
Score: 4.9
Sequence: ATGTAAGCGGATTCAT
Locus tag: BLi00221
BLi00221 -33 4.9 ATGTAAGCGGATTCAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: citM
Ortholog function: Mg(2+) Citrate transporter (TC 2.A.11.1.1)
Bacillus amyloliquefaciens FZB42 RBAM_007810 -33 5.1 ATGTAAGCGTATTCAT
Bacillus licheniformis DSM 13 BLi00221 -33 4.9 ATGTAAGCGGATTCAT
Bacillus pumilus SAFR-032 BPUM_0710 -33 5.2 ATGAAAGCGTATACAA
Bacillus subtilis subsp. subtilis str. 168 BSU07610 -32 4.9 ATGTAAGCGGATTCAT
Position: -208
Score: 4.9
Sequence: TTGAAAACGCTTATAT
Locus tag: BLi00274
BLi00274 -208 4.9 TTGAAAACGCTTATAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: glsA1
Ortholog function: Glutaminase (EC 3.5.1.2)
Bacillus amyloliquefaciens FZB42 RBAM_002800 -62 5 TTGAAAACGTTTTCCA
Bacillus halodurans C-125 BH2717 -32 5.3 ATGTAAACGCTTTCAT
Bacillus licheniformis DSM 13 BLi00274 -208 4.9 TTGAAAACGCTTATAT
Bacillus pumilus SAFR-032 BPUM_0244 -216 5.2 ATGTAAGCGTTTTCTT
Bacillus subtilis subsp. subtilis str. 168 BSU02430 -81 4.4 ATGAAAGCGTTTAACG
Position: -49
Score: 4.7
Sequence: TTGAAAGCGTTTGATT
Locus tag: BLi00330
BLi00330 -49 4.7 TTGAAAGCGTTTGATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: glcD
Ortholog function: Glycolate dehydrogenase (EC 1.1.99.14), subunit GlcD
Anoxybacillus flavithermus WK1 Aflv_2029 -94 4.7 ATGTAAACGTTTTATT
Bacillus amyloliquefaciens FZB42 RBAM_025750 -37 4.5 ATGAAAACGCTTTTCT
Bacillus licheniformis DSM 13 BLi00330 -96 4.3 TTGAAAACGGGTTCTT
-49 4.7 TTGAAAGCGTTTGATT
Bacillus subtilis subsp. subtilis str. 168 BSU28680 -33 4.6 TTGAAAGCGTTTTTTG
Position: -41
Score: 4.7
Sequence: TTGTAAACGCTGTCTT
Locus tag: BLi00439
BLi00439 -41 4.7 TTGTAAACGCTGTCTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: rbsB
Ortholog function: ABC-type sugar transport system, periplasmic component
Bacillus halodurans C-125 BH3448 -19 4.6 TTGAAAGGGGTTTCAT
Bacillus licheniformis DSM 13 BLi00439 -41 4.7 TTGTAAACGCTGTCTT
Paenibacillus sp. JDR-2 Pjdr2_0664 -35 4.7 ATGAAAGCGGTTTTTT
Position: -72
Score: 4.8
Sequence: TTGAAAGCGTTTTTAG
Locus tag: BLi00447
BLi00447 -72 4.8 TTGAAAGCGTTTTTAG
Supported by regulated orthologs from reference regulons
Ortholog gene name: ganA
Ortholog function: Beta-galactosidase (EC 3.2.1.23)
Bacillus clausii KSM-K16 ABC3516 -37 4.6 AAGAAAGCGGTTACTT
Bacillus halodurans C-125 BH2022 -55 4.4 TATAAAACGCTTTCAT
Bacillus licheniformis DSM 13 BLi00447 -72 4.8 TTGAAAGCGTTTTTAG
Bacillus pumilus SAFR-032 BPUM_3617 -51 4.8 AAGAAAGCGTTTTCTT
Bacillus subtilis subsp. subtilis str. 168 BSU34130 -39 5 TTTAAAGCGCTTTCAT
Position: -41
Score: 4.9
Sequence: TTGTAAGCGCTTTATA
Locus tag: BLi00488
BLi00488 -41 4.9 TTGTAAGCGCTTTATA
Supported by regulated orthologs from reference regulons
Ortholog gene name: sdcS
Ortholog function: Sodium:dicarboxylate cotransporter; di- and tricarboxylate transporters
Bacillus clausii KSM-K16 ABC3994 -32 4.7 AAGAAAACGCTTTCAG
Bacillus licheniformis DSM 13 BLi00488 -41 4.9 TTGTAAGCGCTTTATA
Oceanobacillus iheyensis HTE831 OB2540 -82 4.5 ATGTAAACGCAACCAA
Position: -94
Score: 4.4
Sequence: CTGTAAGCGTTTTAAT
Locus tag: BLi00505
BLi00505 -94 4.4 CTGTAAGCGTTTTAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: mtlA
Ortholog function: PTS family mannitol-permease II, BC component
Anoxybacillus flavithermus WK1 Aflv_1566 -58 4.5 CTGTAAGCGCTTTAAT
Bacillus amyloliquefaciens FZB42 RBAM_004230 -96 4.6 TTGTAAGCGTTTTATG
Bacillus halodurans C-125 BH3854 -39 4.3 ATGAGAGCGCTTTATT
Bacillus licheniformis DSM 13 BLi00505 -94 4.4 CTGTAAGCGTTTTAAT
Bacillus pumilus SAFR-032 BPUM_0369 -106 4.1 GTGAAAGCGTTTTACG
Bacillus subtilis subsp. subtilis str. 168 BSU03981 -95 4 CTGTAAGCGTTTTAAC
Geobacillus kaustophilus HTA426 GK1948 -54 4.8 TTGTAAGCGTTTTAAG
Oceanobacillus iheyensis HTE831 OB2603 -75 4.4 TTGTAAGCGGATTCCT
Paenibacillus sp. JDR-2 Pjdr2_6226 -33 4.1 AAGAAAGCGATTTTAT
Position: -96
Score: 4.2
Sequence: TTGACAGCGTTTTATG
Locus tag: BLi00508
BLi00508 -96 4.2 TTGACAGCGTTTTATG
Supported by regulated orthologs from reference regulons
Ortholog gene name: mtlR
Ortholog function: Mannitol operon activator, BglG family
Anoxybacillus flavithermus WK1 Aflv_1564 -65 4.4 TTGAAAGCGGATGAAT
Bacillus amyloliquefaciens FZB42 RBAM_004390 -96 5 TTGAAAGCGTTTTATA
Bacillus halodurans C-125 BH3853 -39 4.3 ATGAGAGCGCTTTATT
Bacillus licheniformis DSM 13 BLi00508 -96 4.2 TTGACAGCGTTTTATG
Bacillus pumilus SAFR-032 BPUM_0388 -60 5 TTGAAAGCGTTTTATA
Bacillus subtilis subsp. subtilis str. 168 BSU04160 -99 5 TTGAAAGCGTTTTATA
Oceanobacillus iheyensis HTE831 OB2602 -75 4.4 TTGTAAGCGGATTCCT
Paenibacillus sp. JDR-2 Pjdr2_6225 -33 4.1 AAGAAAGCGATTTTAT
Position: -108
Score: 4.9
Sequence: ATGATAACGCTTACAA
Locus tag: BLi00639
BLi00639 -108 4.9 ATGATAACGCTTACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: iolF
Ortholog function: Minor myo-inositol transporter
Bacillus amyloliquefaciens FZB42 RBAM_036730 -172 5.1 ATGAAAACGTTGTCAT
Bacillus licheniformis DSM 13 BLi04246 -176 4.7 ATGGAAACGTTGTCAT
Bacillus licheniformis DSM 13 BLi00639 -108 4.9 ATGATAACGCTTACAA
Bacillus subtilis subsp. subtilis str. 168 BSU39710 -172 5.1 ATGAAAACGTTGTCAT
Oceanobacillus iheyensis HTE831 OB0494 -82 4.5 ATGAAAACGAATTCAG
Position: -200
Score: 5.5
Sequence: ATGAAAGCGTTTACAA
Locus tag: BLi00730
BLi00730 -200 5.5 ATGAAAGCGTTTACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: gatC
Ortholog function: Aspartyl (EC 6.3.5.6)/Glutamyl (EC 6.3.5.7) -tRNA amidotransferase subunit C
Bacillus amyloliquefaciens FZB42 RBAM_007070 -196 5 ATGAAAACGCTACCAA
Bacillus licheniformis DSM 13 BLi00730 -200 5.5 ATGAAAGCGTTTACAA
Bacillus pumilus SAFR-032 BPUM_0644 -215 5 ATGTAAGCGCTACCAA
Bacillus subtilis subsp. subtilis str. 168 BSU06670 -205 4.4 AATAAAACGCTTTCAA
Position: -101
Score: 4.8
Sequence: TTGAAAGCGCTACAAA
Locus tag: BLi00796
BLi00796 -101 4.8 TTGAAAGCGCTACAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: treP
Ortholog function: PTS system, trehalose-specific enzyme II, BC component (EC 2.7.1.69)
Bacillus amyloliquefaciens FZB42 RBAM_007970 318 4 GTGAAAACGCTTGCGG
Bacillus cereus ATCC 14579 BC0631 234 4.4 TTGATAACGCTTGCAG
Bacillus halodurans C-125 BH2216 136 4.4 TTGAAAGCCTTGACAT
318 4.4 GTGAAAACGCTTGCTG
Bacillus licheniformis DSM 13 BLi00796 318 4.6 GTGAAAACGCTTGCAG
Bacillus subtilis subsp. subtilis str. 168 BSU07800 318 4.6 GTGAAAACGCTTGCAG
Position: -51
Score: 5.1
Sequence: TTGAAAGCGCTTTTAT
Locus tag: BLi00853
BLi00853 -51 5.1 TTGAAAGCGCTTTTAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: acoR
Ortholog function: Transcriptional activator of acetoin dehydrogenase operon AcoR
Bacillus amyloliquefaciens FZB42 RBAM_008340 -67 5 TTGAAAGCGCTTTATT
Bacillus cereus ATCC 14579 BC2766 -78 5 TTGAAAACGCTTTTAT
Bacillus halodurans C-125 BH1826 -117 4.7 TTGTTAGCGCTTTCTT
Bacillus licheniformis DSM 13 BLi00853 -51 5.1 TTGAAAGCGCTTTTAT
Bacillus pumilus SAFR-032 BPUM_0455 -59 5.1 TTGAAAGCGCTTTTAT
Bacillus subtilis subsp. subtilis str. 168 BSU08100 -67 5 TTGAAAGCGCTTTATT
Position: -29
Score: 4.8
Sequence: TTGTAAACGCTTATAA
Locus tag: BLi00855
BLi00855 -29 4.8 TTGTAAACGCTTATAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: glvA
Ortholog function: Maltose-6'-phosphate glucosidase (EC 3.2.1.122)
Bacillus amyloliquefaciens FZB42 RBAM_008360 -29 4.8 ATGTAAACGTTATCAG
Bacillus clausii KSM-K16 ABC3581 -54 4.8 TTGAAAGCGCTGCCTT
Bacillus licheniformis DSM 13 BLi00855 -29 4.8 TTGTAAACGCTTATAA
Bacillus subtilis subsp. subtilis str. 168 BSU08180 -28 5.1 TTGTAAACGTTATCAA
Position: -207
Score: 4.5
Sequence: TTGACAACGCTTTCAC
Locus tag: BLi00994
BLi00994 -207 4.5 TTGACAACGCTTTCAC
Supported by regulated orthologs from reference regulons
Ortholog gene name: glpF
Ortholog function: Glycerol uptake facilitator protein
Bacillus cereus ATCC 14579 BC1034 -191 4.7 TTGACACCGCTTTCAT
Bacillus clausii KSM-K16 ABC3383 -198 4.2 ATGTATCCGTTTACAA
Bacillus licheniformis DSM 13 BLi00994 -207 4.5 TTGACAACGCTTTCAC
Bacillus pumilus SAFR-032 BPUM_0882 -191 4.9 TTGACAACGTTTTCAT
Bacillus subtilis subsp. subtilis str. 168 BSU09280 -182 4.7 TTGACACCGCTTTCAT
Geobacillus kaustophilus HTA426 GK1359 -206 5.1 TTGACAGCGTTTTCAA
Oceanobacillus iheyensis HTE831 OB2476 -164 4.7 TTGACAACGCTTTCAG
Position: -34
Score: 4.6
Sequence: GTTAAAGCGCTTACAT
Locus tag: BLi01052
BLi01052 -34 4.6 GTTAAAGCGCTTACAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: msmX
Ortholog function: Maltose/maltodextrin transport ATP-binding protein (EC 3.6.3.19)
Anoxybacillus flavithermus WK1 Aflv_2303 -30 4.4 ATGAAATCGATTACAT
Bacillus clausii KSM-K16 ABC1514 -48 4.6 ATGAAAGGGGTTACAA
Bacillus halodurans C-125 BH1140 -47 4.6 TTGTAAGCGCTACAAT
Bacillus licheniformis DSM 13 BLi01052 -34 4.6 GTTAAAGCGCTTACAT
Bacillus pumilus SAFR-032 BPUM_0922 -41 4.1 AGTGAAGCGCTTTCAA
Oceanobacillus iheyensis HTE831 OB1134 -37 4.1 ATGTAATCGTTAACAC
Position: -27
Score: 4.5
Sequence: TTGTAAACGTATTCAC
Locus tag: BLi01062
BLi01062 -27 4.5 TTGTAAACGTATTCAC
Supported by regulated orthologs from reference regulons
Ortholog gene name: yhaR
Ortholog function: Enoyl-CoA hydratase (EC 4.2.1.17)
Bacillus amyloliquefaciens FZB42 RBAM_010120 -29 4.9 ATGTAAGCGGATTCAA
Bacillus licheniformis DSM 13 BLi01062 -27 4.5 TTGTAAACGTATTCAC
Bacillus subtilis subsp. subtilis str. 168 BSU09880 -29 4.6 AAGTAAGCGCATACAT
Position: -75
Score: 4.2
Sequence: TTGAAAACTTTTACCT
Locus tag: BLi01139
BLi01139 -75 4.2 TTGAAAACTTTTACCT
Supported by regulated orthologs from reference regulons
Ortholog gene name: msmR
Ortholog function: Transcriptional regulator of alpha-galactoside utilization, LacI family
Bacillus amyloliquefaciens FZB42 RBAM_027180 -91 4.8 TTGAAAACGCTTACTC
Bacillus halodurans C-125 BH2227 -95 4.5 TTGAAAACGCTTACCC
Bacillus licheniformis DSM 13 BLi01139 -75 4.2 TTGAAAACTTTTACCT
Bacillus pumilus SAFR-032 BPUM_1754 -78 4.4 TTGAAAGCGCTTTACC
Bacillus subtilis subsp. subtilis str. 168 BSU30260 -86 4.8 TTGTAACCGCTTACTT
Position: -51
Score: 4.9
Sequence: ATGAAAGCGCTTTTTA
Locus tag: BLi01140
BLi01140 -51 4.9 ATGAAAGCGCTTTTTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: msmE
Ortholog function: Multiple sugar ABC transporter, substrate-binding protein
Bacillus amyloliquefaciens FZB42 RBAM_027190 -91 4.8 TTGAAAACGCTTACTC
Bacillus halodurans C-125 BH2226 -95 4.5 TTGAAAACGCTTACCC
Bacillus licheniformis DSM 13 BLi01140 -51 4.9 ATGAAAGCGCTTTTTA
Bacillus pumilus SAFR-032 BPUM_1753 -78 4.4 TTGAAAGCGCTTTACC
Bacillus subtilis subsp. subtilis str. 168 BSU30270 -86 4.8 TTGTAACCGCTTACTT
Position: -33
Score: 5.1
Sequence: ATGAAAGCGATTACAA
Locus tag: BLi01241
BLi01241 -33 5.1 ATGAAAGCGATTACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: tctC
Ortholog function: Tricarboxylate transport protein TctC
Bacillus clausii KSM-K16 ABC1013 -71 5.2 TTGAAAACGGTTACAT
Bacillus licheniformis DSM 13 BLi01241 -33 5.1 ATGAAAGCGATTACAA
Oceanobacillus iheyensis HTE831 OB3249 -71 5.2 TTGAAAACGGTTACAA
Position: -41
Score: 5.4
Sequence: ATGAAAGCGTTTTCTA
Locus tag: BLi01359
BLi01359 -41 5.4 ATGAAAGCGTTTTCTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: exuT
Ortholog function: Hexuronate transporter
Bacillus amyloliquefaciens FZB42 RBAM_018010 0 4.3 ATGAAAGCGGTTCTAG
Bacillus subtilis subsp. subtilis str. 168 BSU12360 -123 4.8 ATGACAGCGTTAACAT
-45 4.5 ATGTTAACGTTAACAT
Position: -30
Score: 4.8
Sequence: ATGTAAGCACTTACAA
Locus tag: BLi01368
BLi01368 -30 4.8 ATGTAAGCACTTACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: rhiL
Ortholog function: Putatuve rhamnogalacturonides ABC transporter, substrate-binding protein
Bacillus licheniformis DSM 13 BLi01368 -37 4.5 GAGTAAGCGTTTACAA
-30 4.8 ATGTAAGCACTTACAA
Bacillus subtilis subsp. subtilis str. 168 BSU06970 -32 4.8 ATGTAAGCACTTACAT
-20 4.6 AAGTAAGCGCTTACAG
Paenibacillus sp. JDR-2 Pjdr2_3535 -41 4.6 ATGTAAACACTTACAT
Position: -58
Score: 5.1
Sequence: ATGTAAGCGTTTTAAA
Locus tag: BLi01384
BLi01384 -58 5.1 ATGTAAGCGTTTTAAA
Supported by regulated orthologs from reference regulons