Propagation of PerR regulog to Bacillus licheniformis DSM 13
| Source regulog: | PerR - Bacillales |
| Regulator type: | Transcription factor |
| Regulator family: | FUR |
| Regulation mode: | repressor |
| Biological process: | Oxidative stress response; Peroxide stress response |
| Effector: | Hydrogen peroxide; Manganese ion, (Mn2+); Iron ion, (Fe2+) |
| Phylum: | Firmicutes |
| Propagated regulon: | |
| Target genome | Bacillus licheniformis DSM 13 |
| Orthologous TF(s) | BLi04114, BLi00900, BLi01971 |
| Regulated genes | 13 |
| Locus tag | Position | Score | Sequence | |
|---|---|---|---|---|
|
Position: -59
Score: 4.7 Sequence: TTACACTAATTATAA
Position: -50
Score: 4.9 Sequence: TTATAAACGTTATAA
Position: -33
Score: 4.2 Sequence: TAAGAATTTTTTTTA
Locus tag: BLi00900
|
||||
| BLi00900 | -59 | 4.7 | TTACACTAATTATAA | |
| -50 | 4.9 | TTATAAACGTTATAA | ||
| -33 | 4.2 | TAAGAATTTTTTTTA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: perR | ||||
| Ortholog function: Transcriptional regulator of peroxide stress response, Fur family | ||||
| Bacillus subtilis subsp. subtilis str. 168 | BSU08730 | -51 | 5 | TTATAAACATTACAA |
| -34 | 4.2 | TAAGAATTTTTTTTA | ||
| Bacillus amyloliquefaciens FZB42 | RBAM_008820 | -51 | 5.4 | TTATAAACATTATAA |
| -34 | 4.4 | TAATAATCTTTTTTA | ||
| Bacillus pumilus SAFR-032 | BPUM_0827 | -50 | 5.4 | TTATAAAGATTATAA |
| Bacillus licheniformis DSM 13 | BLi00900 | -50 | 4.9 | TTATAAACGTTATAA |
| -33 | 4.2 | TAAGAATTTTTTTTA | ||
| Anoxybacillus flavithermus WK1 | Aflv_0369 | -38 | 5.5 | TTATAAAAATTATAA |
| -15 | 5.5 | TTATAATTTTTATAA | ||
| Geobacillus kaustophilus HTA426 | GK0478 | -61 | 5.5 | TTATAAATATTATAA |
| -44 | 4.2 | TGATAATTTTTTTCA | ||
| Bacillus cereus ATCC 14579 | BC0518 | -43 | 5.4 | TTATAAGAATTATAA |
| Bacillus halodurans C-125 | BH0951 | -54 | 5.4 | TTATAAAGATTATAA |
| Bacillus clausii KSM-K16 | ABC1322 | -50 | 5.2 | TTATAATTAATATAA |
| Oceanobacillus iheyensis HTE831 | OB0905 | -66 | 5.3 | TTATAAGGATTATAA |
| -49 | 4.3 | TAATAATTTTATTAA | ||
| Paenibacillus sp. JDR-2 | Pjdr2_1094 | -209 | 4.1 | TTGGAAGCATTACAA |
|
Position: -62
Score: 4.2 Sequence: AAAAAATTGTTATAA
Position: -56
Score: 4.2 Sequence: TTGTTATAATAATAA
Locus tag: BLi01022
|
||||
| BLi01022 | -62 | 4.2 | AAAAAATTGTTATAA | |
| -56 | 4.2 | TTGTTATAATAATAA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: plsC | ||||
| Ortholog function: 1-acyl-sn-glycerol-3-phosphate acyltransferase (EC 2.3.1.51) | ||||
| Bacillus amyloliquefaciens FZB42 | RBAM_009770 | -171 | 4.1 | TTAAATTCATTTTCA |
| -87 | 4.2 | ATATAATTATTAGTA | ||
| Bacillus licheniformis DSM 13 | BLi01022 | -62 | 4.2 | AAAAAATTGTTATAA |
| Bacillus cereus ATCC 14579 | BC0228 | -57 | 6 | TTATAATTATTATAA |
|
Position: -62
Score: 4.5 Sequence: TTAGAGTTATTTCAA
Locus tag: BLi01238
|
||||
| BLi01238 | -62 | 4.5 | TTAGAGTTATTTCAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: spxA | ||||
| Ortholog function: Transcriptional regulator | ||||
| Bacillus subtilis subsp. subtilis str. 168 | BSU11500 | -65 | 4.5 | TTAGAGTAATTTCAA |
| Bacillus amyloliquefaciens FZB42 | RBAM_011500 | -90 | 4.3 | GTATAATACCTATAA |
| -64 | 4.5 | TTAAAGTCATTTCAA | ||
| Bacillus pumilus SAFR-032 | BPUM_1077 | -91 | 4.8 | GTATAATCACTATAA |
| -65 | 4.9 | TTAGAACAATTTTAA | ||
| Bacillus licheniformis DSM 13 | BLi01238 | -62 | 4.5 | TTAGAGTTATTTCAA |
| Anoxybacillus flavithermus WK1 | Aflv_2127 | -75 | 5 | TTAAAGTCATTTTAA |
| Geobacillus kaustophilus HTA426 | GK0817 | -165 | 4.5 | TTAAAGTCATTTCAA |
| Bacillus cereus ATCC 14579 | BC1188 | -181 | 4.9 | GTATAATGATTATAG |
| Oceanobacillus iheyensis HTE831 | OB1213 | -72 | 4.8 | TTAGACTAATTTTAA |
|
Position: -200
Score: 5.6 Sequence: TTATAATAATTATTA
Position: -197
Score: 4.5 Sequence: TAATAATTATTATTT
Locus tag: BLi01593
|
||||
| BLi01593 | -200 | 5.6 | TTATAATAATTATTA | |
| -197 | 4.5 | TAATAATTATTATTT | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: zosA | ||||
| Ortholog function: Zn(2+)-translocating P-type ATPase | ||||
| Bacillus subtilis subsp. subtilis str. 168 | BSU13850 | -179 | 4.8 | TGATAATTATTATCA |
| -156 | 5.7 | TTAAAATAATTATAA | ||
| Bacillus amyloliquefaciens FZB42 | RBAM_013620 | -177 | 4.8 | TGATAATTATTATCA |
| -154 | 5.3 | TTAAAACAATTATAA | ||
| Bacillus pumilus SAFR-032 | BPUM_1275 | -179 | 4.8 | TGATAATTATTATCA |
| -156 | 5.6 | TTATAATAATTATTA | ||
| -36 | 4.5 | TGAAAATCATTATCA | ||
| Bacillus licheniformis DSM 13 | BLi01593 | -200 | 5.6 | TTATAATAATTATTA |
| Bacillus cereus ATCC 14579 | BC0453 | -144 | 4.6 | ATAGAATAATTACAA |
| -127 | 4.3 | TAATAACTATTAAAA | ||
| Bacillus halodurans C-125 | BH0744 | -206 | 4.4 | CAATAATTTTTATTA |
| -189 | 5 | TTAAAATTATTATTG | ||
| -83 | 4.3 | TAATGATGATTATTA | ||
| Bacillus clausii KSM-K16 | ABC3349 | -150 | 4.8 | TGATAATTATTATCA |
| -30 | 4.4 | TTAAAATAATTGAAA | ||
|
Position: -86
Score: 4.7 Sequence: TTAAAAAGGTTATAA
Position: -77
Score: 4.2 Sequence: TTATAAAAATGTTTA
Position: -74
Score: 4.8 Sequence: TAAAAATGTTTATAA
Locus tag: BLi02471
|
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| BLi02471 | -86 | 4.7 | TTAAAAAGGTTATAA | |
| -77 | 4.2 | TTATAAAAATGTTTA | ||
| -74 | 4.8 | TAAAAATGTTTATAA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ypzK | ||||
| Ortholog function: GCN5-related N-acetyltransferase (GNAT) domain protein | ||||
| Bacillus pumilus SAFR-032 | BPUM_2058 | -85 | 4.8 | TAAAAATGTTTATAA |
| Bacillus licheniformis DSM 13 | BLi02471 | -74 | 4.8 | TAAAAATGTTTATAA |
| Anoxybacillus flavithermus WK1 | Aflv_1019 | -86 | 4.1 | TTAAAAAATGTTTAA |
| Geobacillus kaustophilus HTA426 | GK2293 | -83 | 4.6 | TGAGAATGTTTATAA |
| Bacillus cereus ATCC 14579 | BC4060 | -87 | 4.3 | TTGAAAATATTGTAA |
| -30 | 4 | TTGTAACTTTTGTAA | ||
| Oceanobacillus iheyensis HTE831 | OB1830 | -136 | 5 | TTATACTAATTCTAA |
|
Position: -117
Score: 5.5 Sequence: TTATAATGATTATTA
Position: -77
Score: 5.5 Sequence: TTATAATGATTATAG
Locus tag: BLi02503
|
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| BLi02503 | -117 | 5.5 | TTATAATGATTATTA | |
| -77 | 5.5 | TTATAATGATTATAG | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: fur | ||||
| Ortholog function: Transcriptional regulator for iron transport and metabolism | ||||
| Bacillus subtilis subsp. subtilis str. 168 | BSU23520 | -116 | 5.2 | TTAAAATCATTATTA |
| -76 | 5.6 | TTATAATAATTATAG | ||
| Bacillus amyloliquefaciens FZB42 | RBAM_021640 | -116 | 5 | TTAGAATGATTATCA |
| -76 | 5.6 | TTATAATAATTATAG | ||
| Bacillus pumilus SAFR-032 | BPUM_2084 | -116 | 5 | TTATAATCGTTATTA |
| -76 | 5.3 | TTAAAATGATTATAG | ||
| Bacillus licheniformis DSM 13 | BLi02503 | -117 | 5.5 | TTATAATGATTATTA |
| -77 | 5.5 | TTATAATGATTATAG | ||
| Anoxybacillus flavithermus WK1 | Aflv_0995 | -236 | 4.3 | GAAAAATAATTATTA |
| -219 | 4.6 | TAATAATCATTTTAT | ||
| -196 | 5 | TTATAATCATTTTAT | ||
| Geobacillus kaustophilus HTA426 | GK2317 | -100 | 4.4 | TAATAACCATTATCA |
| -77 | 4.1 | TAATAGTGATTTTAC | ||
| Bacillus cereus ATCC 14579 | BC4091 | -99 | 4.5 | TGAGAATAATTATCA |
| Bacillus halodurans C-125 | BH1527 | -118 | 4.3 | TTATAACAAATATTA |
| -101 | 4.4 | TAATAATAATTATCT | ||
| -77 | 5.1 | TAATAATCATTATTA | ||
| Bacillus clausii KSM-K16 | ABC1780 | -124 | 4.9 | TTAGAATAATTCCAA |
| -83 | 4.7 | TTGGAATCATTATTA | ||
| Oceanobacillus iheyensis HTE831 | OB1849 | -94 | 6 | TTATAATTATTATAA |
| Paenibacillus sp. JDR-2 | Pjdr2_1270 | -117 | 4.1 | GTGTAATAATGATAA |
| -91 | 5.7 | TTATAATTATTCTAA | ||
| -75 | 5.5 | TTATAATCATTCTAA | ||
|
Position: -114
Score: 4.2 Sequence: TTAAAATGATCAAAA
Locus tag: BLi02803
|
||||
| BLi02803 | -114 | 4.2 | TTAAAATGATCAAAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: hemB | ||||
| Ortholog function: Delta-aminolevulinic acid dehydratase (EC 4.2.1.24) | ||||
| Bacillus subtilis subsp. subtilis str. 168 | BSU28130 | -79 | 6 | TTATAATTATTATAA |
| -49 | 5.5 | TTAGAATGATTATAA | ||
| Bacillus amyloliquefaciens FZB42 | RBAM_025190 | -69 | 5.9 | TTATAATCATTATAA |
| -39 | 5.5 | TTAGAATGATTATAA | ||
| Bacillus pumilus SAFR-032 | BPUM_2454 | -79 | 5.9 | TTATAATCATTATAA |
| -49 | 5.5 | TTGTAATTATTATAA | ||
| Bacillus licheniformis DSM 13 | BLi02943 | -78 | 4.4 | TTATAATCGTTTTGA |
| -48 | 5.5 | TTATAATCATTCTAA | ||
| Bacillus cereus ATCC 14579 | BC4469 | -175 | 5.9 | TTATAATCATTATAA |
| Bacillus halodurans C-125 | BH3044 | -249 | 5.3 | TAATAATAATTCTAA |
| -83 | 4.1 | TTAGACATGTTATAA | ||
| Bacillus clausii KSM-K16 | ABC2628 | -93 | 4.1 | TTAGACATGTTATAA |
| Oceanobacillus iheyensis HTE831 | OB2066 | -250 | 4 | CAAAAAGTATTATTA |
| -43 | 4.4 | TTGAAAAAATTACAA | ||
| Paenibacillus sp. JDR-2 | Pjdr2_4435 | -47 | 5.5 | TTATAATCATTCTAA |
|
Position: -52
Score: 4.9 Sequence: TTATAATAACTATCA
Locus tag: BLi02845
|
||||
| BLi02845 | -52 | 4.9 | TTATAATAACTATCA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: yybE | ||||
| Ortholog function: Transcriptional regulator, LysR family | ||||
| Bacillus amyloliquefaciens FZB42 | RBAM_024240 | -57 | 5.1 | TTATAATAACTATAG |
| Bacillus licheniformis DSM 13 | BLi02845 | -52 | 4.9 | TTATAATAACTATCA |
|
Position: -78
Score: 4.4 Sequence: TTATAATCGTTTTGA
Position: -48
Score: 5.5 Sequence: TTATAATCATTCTAA
Locus tag: BLi02947
|
||||
| BLi02947 | -78 | 4.4 | TTATAATCGTTTTGA | |
| -48 | 5.5 | TTATAATCATTCTAA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: hemA | ||||
| Ortholog function: Glutamyl-tRNA reductase (EC 1.2.1.70) | ||||
| Bacillus subtilis subsp. subtilis str. 168 | BSU28170 | -79 | 6 | TTATAATTATTATAA |
| -49 | 5.5 | TTAGAATGATTATAA | ||
| Bacillus amyloliquefaciens FZB42 | RBAM_025230 | -69 | 5.9 | TTATAATCATTATAA |
| -39 | 5.5 | TTAGAATGATTATAA | ||
| Bacillus pumilus SAFR-032 | BPUM_2458 | -79 | 5.9 | TTATAATCATTATAA |
| -49 | 5.5 | TTGTAATTATTATAA | ||
| Bacillus licheniformis DSM 13 | BLi02947 | -78 | 4.4 | TTATAATCGTTTTGA |
| -48 | 5.5 | TTATAATCATTCTAA | ||
| Bacillus cereus ATCC 14579 | BC4473 | -175 | 5.9 | TTATAATCATTATAA |
| Bacillus halodurans C-125 | BH3048 | -249 | 5.3 | TAATAATAATTCTAA |
| -83 | 4.1 | TTAGACATGTTATAA | ||
| Bacillus clausii KSM-K16 | ABC2632 | -93 | 4.1 | TTAGACATGTTATAA |
| Oceanobacillus iheyensis HTE831 | OB2070 | -66 | 4.8 | TTATAATAAATATTA |
| -49 | 5.1 | TTATAATAATATTAA | ||
| Paenibacillus sp. JDR-2 | Pjdr2_4440 | -47 | 5.5 | TTATAATCATTCTAA |
|
Position: -88
Score: 5.7 Sequence: TTAAAATAATTATAA
Locus tag: BLi03480
|
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| BLi03480 | -88 | 5.7 | TTAAAATAATTATAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: mrgA | ||||
| Ortholog function: Metalloregulation DNA-binding stress protein | ||||
| Bacillus subtilis subsp. subtilis str. 168 | BSU32990 | -83 | 6 | TTATAATTATTATAA |
| Bacillus amyloliquefaciens FZB42 | RBAM_030100 | -76 | 6 | TTATAATTATTATAA |
| Bacillus licheniformis DSM 13 | BLi03480 | -88 | 5.7 | TTAAAATAATTATAA |
| -54 | 4.3 | TTGTATTTGTTATAA | ||
|
Position: -87
Score: 6 Sequence: TTATAATAATTATAA
Locus tag: BLi04113
|
||||
| BLi04113 | -87 | 6 | TTATAATAATTATAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: katA | ||||
| Ortholog function: Catalase (EC 1.11.1.6) | ||||
| Bacillus subtilis subsp. subtilis str. 168 | BSU08820 | -78 | 6 | TTATAATAATTATAA |
| Bacillus amyloliquefaciens FZB42 | RBAM_009090 | -78 | 5.9 | TTATAATCATTATAA |
| Bacillus licheniformis DSM 13 | BLi04113 | -87 | 6 | TTATAATAATTATAA |
| Oceanobacillus iheyensis HTE831 | OB0633 | -98 | 5.2 | TTAAAATAATTGTAA |
|
Position: -70
Score: 5.6 Sequence: TTATAATAATTATAG
Locus tag: BLi04291
|
||||
| BLi04291 | -70 | 5.6 | TTATAATAATTATAG | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ahpC | ||||
| Ortholog function: Alkyl hydroperoxide reductase protein C (EC 1.6.4.-) | ||||
| Bacillus subtilis subsp. subtilis str. 168 | BSU40090 | -60 | 4.9 | TTAGAATTATTATTG |
| Bacillus amyloliquefaciens FZB42 | RBAM_036960 | -79 | 4.9 | TTAGAATTATTATTG |
| Bacillus licheniformis DSM 13 | BLi04291 | -70 | 5.6 | TTATAATAATTATAG |
| Anoxybacillus flavithermus WK1 | Aflv_2773 | -100 | 5.5 | TTATAATTGTTATAA |
| Geobacillus kaustophilus HTA426 | GK2575 | -44 | 5.7 | TTAAAATTATTATAA |
| Bacillus cereus ATCC 14579 | BC0377 | -88 | 5.3 | TTAGAATTATTATAG |