Propagation of TnrA regulog to Geobacillus thermodenitrificans NG80-2
| Source regulog: | TnrA - Bacillales |
| Regulator type: | Transcription factor |
| Regulator family: | MerR |
| Regulation mode: | repressor (activator) |
| Biological process: | Nitrogen assimilation |
| Effector: | NrgB, ammonium uptake protein; NrgA, ammonium uptake protein; Feedback-inhibited GlnA, glutamine synthetase |
| Phylum: | Firmicutes |
| Propagated regulon: | |
| Target genome | Geobacillus thermodenitrificans NG80-2 |
| Orthologous TF(s) | GTNG_1751 |
| Regulated genes | 21 |
| Locus tag | Position | Score | Sequence | |
|---|---|---|---|---|
|
Position: -4
Score: 3.6 Sequence: CGTCATGATAATTGCCA
Locus tag: GTNG_0489
|
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| GTNG_0489 | -4 | 3.6 | CGTCATGATAATTGCCA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ygaF | ||||
| Ortholog function: Peroxiredoxin | ||||
| Paenibacillus sp. JDR-2 | Pjdr2_5899 | -34 | 3.6 | GGTTAGTAAACCTGACT |
|
Position: -125
Score: 4.8 Sequence: TGTTAGAAAACTTAACA
Position: -50
Score: 5.4 Sequence: TGTTATATATTATAACA
Locus tag: GTNG_1313
|
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| GTNG_1313 | -125 | 4.8 | TGTTAGAAAACTTAACA | |
| -50 | 5.4 | TGTTATATATTATAACA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: nrgA | ||||
| Ortholog function: Ammonium transporter | ||||
| Anoxybacillus flavithermus WK1 | Aflv_1332 | -112 | 4.6 | TGTCATGAAAAATAACA |
| -49 | 4.8 | TGTAATATATTATAACC | ||
| -27 | 5 | TGTTATAAAAAATGACA | ||
| Geobacillus kaustophilus HTA426 | GK1452 | -124 | 4.4 | TGTTAAGAAATTTAACA |
| -48 | 5.4 | TGTTATATATTATGACA | ||
| Bacillus halodurans C-125 | BH3834 | -138 | 4 | TGTCAGATATAGGCACA |
| -113 | 4.9 | TGTCTGATTATCTGACA | ||
| -41 | 4.3 | TATTAGAAAAACTTACA | ||
| Bacillus clausii KSM-K16 | ABC3928 | -84 | 5.2 | TGTTAGATATCCTGACA |
| Paenibacillus sp. JDR-2 | Pjdr2_2141 | -159 | 4.2 | TGTGAAAAAACTTAACA |
| -34 | 4.5 | TGTTAGTAAACATCACA | ||
|
Position: -16
Score: 4.9 Sequence: TGTGAGGTAATGTAACA
Locus tag: GTNG_1483
|
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| GTNG_1483 | -16 | 4.9 | TGTGAGGTAATGTAACA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: glnA2 | ||||
| Ortholog function: Glutamine synthetase type I (EC 6.3.1.2) | ||||
| Anoxybacillus flavithermus WK1 | Aflv_1403 | -16 | 4.9 | TGTGAGGTAATGTAACA |
| Geobacillus kaustophilus HTA426 | GK1637 | -16 | 4.9 | TGTGAGGTAATGTGACA |
| Bacillus halodurans C-125 | BH3867 | -103 | 5.7 | TGTCAGATAATCTAACA |
| -33 | 4.9 | TGTCACATTACATTACA | ||
| Bacillus clausii KSM-K16 | ABC3940 | -103 | 5.7 | TGTCAGATAATCTGACA |
|
Position: -33
Score: 4.9 Sequence: TGTTAGAAAAAGTTACA
Locus tag: GTNG_1751
|
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| GTNG_1751 | -33 | 4.9 | TGTTAGAAAAAGTTACA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: tnrA | ||||
| Ortholog function: Transcriptional regulator of nitrogen assimilation, MerR family | ||||
| Bacillus subtilis subsp. subtilis str. 168 | BSU13310 | -124 | 3.9 | TGTTAATTTTTCTTCCG |
| -81 | 5.5 | TGTTAGAAAATATGACA | ||
| Bacillus amyloliquefaciens FZB42 | RBAM_013130 | -124 | 4.1 | TGTCAATTTTTCTGCCG |
| -81 | 4.8 | CGTCAGAAAACCTGACA | ||
| Bacillus pumilus SAFR-032 | BPUM_1230 | -121 | 4 | TGTCAACTTTCCTTCCA |
| -80 | 5.5 | TGTTATATTTTCTAACA | ||
| Bacillus licheniformis DSM 13 | BLi01490 | -124 | 3.8 | TGTAAACTTTTCTTCCG |
| -81 | 5.6 | TGTTAGATTTTCTGACA | ||
| Anoxybacillus flavithermus WK1 | Aflv_1544 | -113 | 4.9 | TGTTACTTTTTATAACA |
| -82 | 4.9 | TGTTACTTTTTATAACA | ||
| -27 | 5.4 | TGTTATAAAATATGACA | ||
| Geobacillus kaustophilus HTA426 | GK1860 | -86 | 3.9 | TGTTAATTTTATTTACA |
| -33 | 4.6 | CGTTAGAAAATATAACG | ||
| Bacillus halodurans C-125 | BH1494 | -110 | 5.5 | TGTAAGAAAATCTAACA |
| Bacillus clausii KSM-K16 | ABC1760 | -99 | 5.5 | TGTTAGATTTTCTTACA |
| -57 | 5 | TGTGATATATTGTTACA | ||
| Oceanobacillus iheyensis HTE831 | OB1650 | -80 | 5.1 | TGTTAGAAATACTAACA |
| -57 | 4.3 | TGACATATAAGCTGACG | ||
| Paenibacillus sp. JDR-2 | Pjdr2_5154 | -302 | 5.7 | TGTTAGATAATCTAACA |
| -41 | 5 | TGTTAGAAAACATTACA | ||
|
Position: -237
Score: 4.9 Sequence: TGTAACTTTTTCTAACA
Locus tag: GTNG_1752
|
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| GTNG_1752 | -237 | 4.9 | TGTAACTTTTTCTAACA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ykzB | ||||
| Ortholog function: Hypothetical protein | ||||
| Bacillus subtilis subsp. subtilis str. 168 | BSU13320 | -130 | 5.5 | TGTCATATTTTCTAACA |
| -87 | 3.9 | CGGAAGAAAAATTAACA | ||
| Bacillus amyloliquefaciens FZB42 | RBAM_013140 | -130 | 4.8 | TGTCAGGTTTTCTGACG |
| -87 | 4.1 | CGGCAGAAAAATTGACA | ||
| Anoxybacillus flavithermus WK1 | Aflv_1546 | -172 | 5.4 | TGTCATATTTTATAACA |
| -117 | 4.9 | TGTTATAAAAAGTAACA | ||
| -86 | 4.9 | TGTTATAAAAAGTAACA | ||
| Geobacillus kaustophilus HTA426 | GK1862 | -176 | 4.6 | CGTTATATTTTCTAACG |
| -123 | 3.9 | TGTAAATAAAATTAACA | ||
|
Position: -161
Score: 4.5 Sequence: TGTAAGAAATTATGCCC
Locus tag: GTNG_1931
|
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| GTNG_1931 | -161 | 4.5 | TGTAAGAAATTATGCCC | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ilvD | ||||
| Ortholog function: Dihydroxy-acid dehydratase (EC 4.2.1.9) | ||||
| Bacillus pumilus SAFR-032 | BPUM_1922 | -162 | 5 | GGTCAGATTTTATGACA |
| Bacillus licheniformis DSM 13 | BLi02324 | -248 | 4.5 | TGTAATAAAATATCACT |
| Anoxybacillus flavithermus WK1 | Aflv_1238 | -19 | 4.1 | TGTCATTTTATTTTAAA |
| 1 | 4.3 | TGTTACAATGTTTAACA | ||
| Geobacillus kaustophilus HTA426 | GK2046 | -177 | 4.9 | TGTAAGAAATTATGACG |
|
Position: -49
Score: 4.6 Sequence: TGTAAGATACAATAACA
Locus tag: GTNG_2351
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| GTNG_2351 | -49 | 4.6 | TGTAAGATACAATAACA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: gltT | ||||
| Ortholog function: H(+)/sodium-glutamate symporter | ||||
| Bacillus halodurans C-125 | BH3820 | -217 | 4.2 | TGTTAGCCTATTTGACA |
| -127 | 5.5 | TGTCATAATATCTAACA | ||
| Oceanobacillus iheyensis HTE831 | OB0021 | -678 | 4.6 | TGTTAAATAATGTAACG |