Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
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Propagation of TnrA regulog to Geobacillus thermodenitrificans NG80-2

Reference regulog properties
Source regulog: TnrA - Bacillales
Regulator type: Transcription factor
Regulator family: MerR
Regulation mode: repressor (activator)
Biological process: Nitrogen assimilation
Effector: NrgB, ammonium uptake protein; NrgA, ammonium uptake protein; Feedback-inhibited GlnA, glutamine synthetase
Phylum: Firmicutes
Propagated regulon:
Target genome Geobacillus thermodenitrificans NG80-2
Orthologous TF(s) GTNG_1751
Regulated genes 21
Built upon 304 sites [see more]
Predicted regulatory interactions in Geobacillus thermodenitrificans NG80-2
Locus tag Position Score Sequence
Position: -4
Score: 3.6
Sequence: CGTCATGATAATTGCCA
Locus tag: GTNG_0489
GTNG_0489 -4 3.6 CGTCATGATAATTGCCA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ygaF
Ortholog function: Peroxiredoxin
Paenibacillus sp. JDR-2 Pjdr2_5899 -34 3.6 GGTTAGTAAACCTGACT
Position: -125
Score: 4.8
Sequence: TGTTAGAAAACTTAACA
Position: -50
Score: 5.4
Sequence: TGTTATATATTATAACA
Locus tag: GTNG_1313
GTNG_1313 -125 4.8 TGTTAGAAAACTTAACA
-50 5.4 TGTTATATATTATAACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: nrgA
Ortholog function: Ammonium transporter
Anoxybacillus flavithermus WK1 Aflv_1332 -112 4.6 TGTCATGAAAAATAACA
-49 4.8 TGTAATATATTATAACC
-27 5 TGTTATAAAAAATGACA
Geobacillus kaustophilus HTA426 GK1452 -124 4.4 TGTTAAGAAATTTAACA
-48 5.4 TGTTATATATTATGACA
Bacillus halodurans C-125 BH3834 -138 4 TGTCAGATATAGGCACA
-113 4.9 TGTCTGATTATCTGACA
-41 4.3 TATTAGAAAAACTTACA
Bacillus clausii KSM-K16 ABC3928 -84 5.2 TGTTAGATATCCTGACA
Paenibacillus sp. JDR-2 Pjdr2_2141 -159 4.2 TGTGAAAAAACTTAACA
-34 4.5 TGTTAGTAAACATCACA
Position: -16
Score: 4.9
Sequence: TGTGAGGTAATGTAACA
Locus tag: GTNG_1483
GTNG_1483 -16 4.9 TGTGAGGTAATGTAACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: glnA2
Ortholog function: Glutamine synthetase type I (EC 6.3.1.2)
Anoxybacillus flavithermus WK1 Aflv_1403 -16 4.9 TGTGAGGTAATGTAACA
Geobacillus kaustophilus HTA426 GK1637 -16 4.9 TGTGAGGTAATGTGACA
Bacillus halodurans C-125 BH3867 -103 5.7 TGTCAGATAATCTAACA
-33 4.9 TGTCACATTACATTACA
Bacillus clausii KSM-K16 ABC3940 -103 5.7 TGTCAGATAATCTGACA
Position: -33
Score: 4.9
Sequence: TGTTAGAAAAAGTTACA
Locus tag: GTNG_1751
GTNG_1751 -33 4.9 TGTTAGAAAAAGTTACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: tnrA
Ortholog function: Transcriptional regulator of nitrogen assimilation, MerR family
Bacillus subtilis subsp. subtilis str. 168 BSU13310 -124 3.9 TGTTAATTTTTCTTCCG
-81 5.5 TGTTAGAAAATATGACA
Bacillus amyloliquefaciens FZB42 RBAM_013130 -124 4.1 TGTCAATTTTTCTGCCG
-81 4.8 CGTCAGAAAACCTGACA
Bacillus pumilus SAFR-032 BPUM_1230 -121 4 TGTCAACTTTCCTTCCA
-80 5.5 TGTTATATTTTCTAACA
Bacillus licheniformis DSM 13 BLi01490 -124 3.8 TGTAAACTTTTCTTCCG
-81 5.6 TGTTAGATTTTCTGACA
Anoxybacillus flavithermus WK1 Aflv_1544 -113 4.9 TGTTACTTTTTATAACA
-82 4.9 TGTTACTTTTTATAACA
-27 5.4 TGTTATAAAATATGACA
Geobacillus kaustophilus HTA426 GK1860 -86 3.9 TGTTAATTTTATTTACA
-33 4.6 CGTTAGAAAATATAACG
Bacillus halodurans C-125 BH1494 -110 5.5 TGTAAGAAAATCTAACA
Bacillus clausii KSM-K16 ABC1760 -99 5.5 TGTTAGATTTTCTTACA
-57 5 TGTGATATATTGTTACA
Oceanobacillus iheyensis HTE831 OB1650 -80 5.1 TGTTAGAAATACTAACA
-57 4.3 TGACATATAAGCTGACG
Paenibacillus sp. JDR-2 Pjdr2_5154 -302 5.7 TGTTAGATAATCTAACA
-41 5 TGTTAGAAAACATTACA
Position: -237
Score: 4.9
Sequence: TGTAACTTTTTCTAACA
Locus tag: GTNG_1752
GTNG_1752 -237 4.9 TGTAACTTTTTCTAACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ykzB
Ortholog function: Hypothetical protein
Bacillus subtilis subsp. subtilis str. 168 BSU13320 -130 5.5 TGTCATATTTTCTAACA
-87 3.9 CGGAAGAAAAATTAACA
Bacillus amyloliquefaciens FZB42 RBAM_013140 -130 4.8 TGTCAGGTTTTCTGACG
-87 4.1 CGGCAGAAAAATTGACA
Anoxybacillus flavithermus WK1 Aflv_1546 -172 5.4 TGTCATATTTTATAACA
-117 4.9 TGTTATAAAAAGTAACA
-86 4.9 TGTTATAAAAAGTAACA
Geobacillus kaustophilus HTA426 GK1862 -176 4.6 CGTTATATTTTCTAACG
-123 3.9 TGTAAATAAAATTAACA
Position: -161
Score: 4.5
Sequence: TGTAAGAAATTATGCCC
Locus tag: GTNG_1931
GTNG_1931 -161 4.5 TGTAAGAAATTATGCCC
Supported by regulated orthologs from reference regulons
Ortholog gene name: ilvD
Ortholog function: Dihydroxy-acid dehydratase (EC 4.2.1.9)
Bacillus pumilus SAFR-032 BPUM_1922 -162 5 GGTCAGATTTTATGACA
Bacillus licheniformis DSM 13 BLi02324 -248 4.5 TGTAATAAAATATCACT
Anoxybacillus flavithermus WK1 Aflv_1238 -19 4.1 TGTCATTTTATTTTAAA
1 4.3 TGTTACAATGTTTAACA
Geobacillus kaustophilus HTA426 GK2046 -177 4.9 TGTAAGAAATTATGACG
Position: -49
Score: 4.6
Sequence: TGTAAGATACAATAACA
Locus tag: GTNG_2351
GTNG_2351 -49 4.6 TGTAAGATACAATAACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: gltT
Ortholog function: H(+)/sodium-glutamate symporter
Bacillus halodurans C-125 BH3820 -217 4.2 TGTTAGCCTATTTGACA
-127 5.5 TGTCATAATATCTAACA
Oceanobacillus iheyensis HTE831 OB0021 -678 4.6 TGTTAAATAATGTAACG
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