Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of MalR regulog to Bacillus subtilis subsp. subtilis str. JH642

Reference regulog properties
Source regulog: MalR - Bacillales
Regulator type: Transcription factor
Regulator family: CitB
Regulation mode: activator
Biological process: Malate utilization
Effector: MalK, sensor histidine kinase (malate)
Phylum: Firmicutes
Propagated regulon:
Target genome Bacillus subtilis subsp. subtilis str. JH642
Orthologous TF(s) BsubsJ_010100017020
Regulated genes 4
Built upon 11 sites [see more]
Predicted regulatory interactions in Bacillus subtilis subsp. subtilis str. JH642
Locus tag Position Score Sequence
Position: -103
Score: 5.7
Sequence: CTAACCTTTGT-(5)-TTAATTAATTA
Position: -102
Score: 6.3
Sequence: TAACCTTTGTG-(4)-TTAATTAATTA
Position: -97
Score: 6.5
Sequence: TTTGTGTTTTT-(3)-TTAATTAAAAT
Position: -96
Score: 6.5
Sequence: TTGTGTTTTTT-(2)-TTAATTAAAAT
Position: -95
Score: 5.4
Sequence: TGTGTTTTTTA-(5)-TTAAAATGTTT
Position: -93
Score: 5.3
Sequence: TGTTTTTTAAT-(3)-TTAAAATGTTT
Position: -92
Score: 5.8
Sequence: GTTTTTTAATT-(2)-TTAAAATGTTT
Position: -91
Score: 6.1
Sequence: TTTTTTAATTA-(13)-TTAACTTAGTT
Position: -88
Score: 7.3
Sequence: TTTAATTAATT-(10)-TTAACTTAGTT
Position: -87
Score: 7.4
Sequence: TTAATTAATTA-(9)-TTAACTTAGTT
Position: -83
Score: 7.3
Sequence: TTAATTAAAAT-(5)-TTAACTTAGTT
Position: -79
Score: 5.3
Sequence: TTAAAATGTTT-(2)-TAACTTAGTTA
Locus tag: BsubsJ_010100004133
BsubsJ_010100004133 -103 5.7 CTAACCTTTGT-(5)-TTAATTAATTA
-102 6.3 TAACCTTTGTG-(4)-TTAATTAATTA
-97 6.5 TTTGTGTTTTT-(3)-TTAATTAAAAT
-96 6.5 TTGTGTTTTTT-(2)-TTAATTAAAAT
-95 5.4 TGTGTTTTTTA-(5)-TTAAAATGTTT
-93 5.3 TGTTTTTTAAT-(3)-TTAAAATGTTT
-92 5.8 GTTTTTTAATT-(2)-TTAAAATGTTT
-91 6.1 TTTTTTAATTA-(13)-TTAACTTAGTT
-88 7.3 TTTAATTAATT-(10)-TTAACTTAGTT
-87 7.4 TTAATTAATTA-(9)-TTAACTTAGTT
-83 7.3 TTAATTAAAAT-(5)-TTAACTTAGTT
-79 5.3 TTAAAATGTTT-(2)-TAACTTAGTTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: yflS
Ortholog function: Putative malate transporter
Bacillus amyloliquefaciens FZB42 RBAM_007730 -89 5.2 TTTTTTAATTA-(9)-TTTATTAACTT
Bacillus halodurans C-125 BH3327 -63 7.4 TTGCTCTTTTA-(6)-CTACTTTTTTT
-46 7.7 CTACTTTTTTT-(6)-TTAGGTTAATC
Bacillus subtilis subsp. subtilis str. 168 BSU07570 -91 5.2 TTTTTTAATTA-(9)-TTTATTAACTT
Position: -120
Score: 7.4
Sequence: TTTTTTCTAAT-(13)-TTAATTTAATT
Position: -119
Score: 7.6
Sequence: TTTTTCTAATC-(12)-TTAATTTAATT
Position: -96
Score: 9
Sequence: TTAATTTAATT-(5)-TTAGTTTTTTA
Locus tag: BsubsJ_010100017045
BsubsJ_010100017045 -120 7.4 TTTTTTCTAAT-(13)-TTAATTTAATT
-119 7.6 TTTTTCTAATC-(12)-TTAATTTAATT
-96 9 TTAATTTAATT-(5)-TTAGTTTTTTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: maeN
Ortholog function: Malate Na(+) symporter
Bacillus licheniformis DSM 13 BLi03342 -98 9.4 TTAATTTAATT-(9)-TTATTTTAATT
Bacillus pumilus SAFR-032 BPUM_2827 -96 8.3 TTATTTTACTT-(9)-TTAATTTAGTT
Bacillus subtilis subsp. subtilis str. 168 BSU31580 -96 7.3 TTAATTTAATT-(9)-TTTTTTAACTT
Position: -74
Score: 5.3
Sequence: GTAAATTTTTC-(11)-AAGCTTTTTGT
Position: -73
Score: 5.7
Sequence: TAAATTTTTCT-(10)-AAGCTTTTTGT
Locus tag: BsubsJ_010100019885
BsubsJ_010100019885 -74 5.3 GTAAATTTTTC-(11)-AAGCTTTTTGT
-73 5.7 TAAATTTTTCT-(10)-AAGCTTTTTGT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ywkB
Ortholog function: Malate permease
Bacillus subtilis subsp. subtilis str. 168 BSU37040 -156 -1 AATTTAAATAA-(10)-AAATTAAGTAA
Position: -243
Score: 5.3
Sequence: GTGTTTTTTTT-(5)-CTGATAATATT
Position: -240
Score: 5.8
Sequence: TTTTTTTTATA-(11)-TTCAATTAAAA
Position: -239
Score: 5.1
Sequence: TTTTTTTATAT-(10)-TTCAATTAAAA
Position: -238
Score: 5.5
Sequence: TTTTTTATATT-(9)-TTCAATTAAAA
Position: -227
Score: 5.1
Sequence: CTGATAATATT-(7)-AAAATTTAAAT
Position: -222
Score: 5.1
Sequence: AATATTCAATT-(11)-ATAAGTATATT
Position: -218
Score: 5.3
Sequence: TTCAATTAAAA-(7)-ATAAGTATATT
Position: -217
Score: 5.3
Sequence: TCAATTAAAAA-(6)-ATAAGTATATT
Position: -213
Score: 5.6
Sequence: TTAAAAAATTT-(2)-ATAAGTATATT
Position: -205
Score: 5.4
Sequence: TTTAAATAAGT-(11)-TTAAGTAATTT
Position: -204
Score: 5.9
Sequence: TTAAATAAGTA-(10)-TTAAGTAATTT
Position: -200
Score: 6.8
Sequence: ATAAGTATATT-(10)-GTAATTTTCTT
Position: -199
Score: 6.1
Sequence: TAAGTATATTA-(9)-GTAATTTTCTT
Position: -191
Score: 5.3
Sequence: TTAAAAAATTA-(6)-TTTCTTCTCTT
Position: -188
Score: 5.4
Sequence: AAAAATTAAGT-(13)-TGAATTTTGAT
Position: -184
Score: 5.4
Sequence: ATTAAGTAATT-(9)-TGAATTTTGAT
Position: -183
Score: 6.6
Sequence: TTAAGTAATTT-(8)-TGAATTTTGAT
Position: -182
Score: 5.6
Sequence: TAAGTAATTTT-(7)-TGAATTTTGAT
Position: -179
Score: 7.1
Sequence: GTAATTTTCTT-(4)-TGAATTTTGAT
Position: -178
Score: 6
Sequence: TAATTTTCTTC-(3)-TGAATTTTGAT
Position: -174
Score: 6.1
Sequence: TTTCTTCTCTT-(5)-TTGATTTTGAC
Position: -63
Score: 6
Sequence: GTCATATTTTA-(9)-TTACTTAACTT
Position: -60
Score: 6.2
Sequence: ATATTTTAGAT-(6)-TTACTTAACTT
Position: -55
Score: 5.5
Sequence: TTAGATGGGTT-(5)-TTAACTTGGTT
Position: -44
Score: 5.2
Sequence: ATTACTTAACT-(3)-TTAACTATTTC
Position: -43
Score: 6.8
Sequence: TTACTTAACTT-(2)-TTAACTATTTC
Locus tag: BsubsJ_010100019890
BsubsJ_010100019890 -243 5.3 GTGTTTTTTTT-(5)-CTGATAATATT
-240 5.8 TTTTTTTTATA-(11)-TTCAATTAAAA
-239 5.1 TTTTTTTATAT-(10)-TTCAATTAAAA
-238 5.5 TTTTTTATATT-(9)-TTCAATTAAAA
-227 5.1 CTGATAATATT-(7)-AAAATTTAAAT
-222 5.1 AATATTCAATT-(11)-ATAAGTATATT
-218 5.3 TTCAATTAAAA-(7)-ATAAGTATATT
-217 5.3 TCAATTAAAAA-(6)-ATAAGTATATT
-213 5.6 TTAAAAAATTT-(2)-ATAAGTATATT
-205 5.4 TTTAAATAAGT-(11)-TTAAGTAATTT
-204 5.9 TTAAATAAGTA-(10)-TTAAGTAATTT
-200 6.8 ATAAGTATATT-(10)-GTAATTTTCTT
-199 6.1 TAAGTATATTA-(9)-GTAATTTTCTT
-191 5.3 TTAAAAAATTA-(6)-TTTCTTCTCTT
-188 5.4 AAAAATTAAGT-(13)-TGAATTTTGAT
-184 5.4 ATTAAGTAATT-(9)-TGAATTTTGAT
-183 6.6 TTAAGTAATTT-(8)-TGAATTTTGAT
-182 5.6 TAAGTAATTTT-(7)-TGAATTTTGAT
-179 7.1 GTAATTTTCTT-(4)-TGAATTTTGAT
-178 6 TAATTTTCTTC-(3)-TGAATTTTGAT
-174 6.1 TTTCTTCTCTT-(5)-TTGATTTTGAC
-63 6 GTCATATTTTA-(9)-TTACTTAACTT
-60 6.2 ATATTTTAGAT-(6)-TTACTTAACTT
-55 5.5 TTAGATGGGTT-(5)-TTAACTTGGTT
-44 5.2 ATTACTTAACT-(3)-TTAACTATTTC
-43 6.8 TTACTTAACTT-(2)-TTAACTATTTC
Supported by regulated orthologs from reference regulons
Ortholog gene name: ywkA
Ortholog function: NAD-dependent malate dehydrogenase (EC 1.1.1.38)
Bacillus amyloliquefaciens FZB42 RBAM_034210 -206 -0.8 AACTTAAAAAA-(10)-AAATTAAGTAA
Bacillus licheniformis DSM 13 BLi03953 -242 -0.8 AACTTAATTAA-(10)-AAATTAACTAA
Bacillus pumilus SAFR-032 BPUM_3348 -209 0.5 AAATTAAATAA-(10)-AAATTATCTAA
Bacillus subtilis subsp. subtilis str. 168 BSU37050 -156 -1 AATTTAAATAA-(10)-AAATTAAGTAA
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