Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of ComA regulog to Bacillus subtilis subsp. subtilis str. 168

Reference regulog properties
Source regulog: ComA - Bacillales
Regulator type: Transcription factor
Regulator family: LuxR
Regulation mode: activator
Biological process: Competence
Effector: ComP, sensor histidine kinase (ComX)
Phylum: Firmicutes
Propagated regulon:
Target genome Bacillus subtilis subsp. subtilis str. 168
Orthologous TF(s) BSU31680
Regulated genes 6
Built upon 16 sites [see more]
Predicted regulatory interactions in Bacillus subtilis subsp. subtilis str. 168
Locus tag Position Score Sequence
Position: -104
Score: 7.2
Sequence: TTGCGTGCTCCCGAAA-(7)-TTGCGT
Locus tag: BSU03770
BSU03770 -104 7.2 TTGCGTGCTCCCGAAA-(7)-TTGCGT
Supported by regulated orthologs from reference regulons
Ortholog gene name: rapC
Ortholog function: Response regulator aspartate phosphatase
Bacillus subtilis subsp. subtilis str. 168 BSU03770 -104 7.2 TTGCGTGCTCCCGAAA-(16)-TTTCGG
Bacillus amyloliquefaciens FZB42 RBAM_004010 -103 7.1 TTGCGCTCTGCCGAAA-(15)-TTTCGG
Position: -124
Score: 8
Sequence: TTGCAGAATGCCGCAA-(16)-TTTCGG
Locus tag: BSU07560
BSU07560 -124 8 TTGCAGAATGCCGCAA-(16)-TTTCGG
Supported by regulated orthologs from reference regulons
Ortholog gene name: pel
Ortholog function: Pectate lyase precursor (EC 4.2.2.2)
Bacillus subtilis subsp. subtilis str. 168 BSU07560 -124 8 TTGCAGAATGCCGCAA-(16)-TTTCGG
Position: -106
Score: 8.1
Sequence: TTGCGGTTAGCCGAAA-(8)-TTGCGG
Locus tag: BSU12430
BSU12430 -106 8.1 TTGCGGTTAGCCGAAA-(8)-TTGCGG
Supported by regulated orthologs from reference regulons
Ortholog gene name: rapA
Ortholog function: Response regulator aspartate phosphatase
Bacillus subtilis subsp. subtilis str. 168 BSU12430 -106 8.1 TTGCGGTTAGCCGAAA-(8)-TTGCGG
Position: -108
Score: 7.9
Sequence: TTGCGGTCTCACCGAA-(8)-TTGCGG
Locus tag: BSU25830
BSU25830 -108 7.9 TTGCGGTCTCACCGAA-(8)-TTGCGG
Supported by regulated orthologs from reference regulons
Ortholog gene name: rapE
Ortholog function: Response regulator aspartate phosphatase
Bacillus subtilis subsp. subtilis str. 168 BSU25830 -108 7.9 TTGCGGTCTCACCGAA-(8)-TTGCGG
Position: -145
Score: 8.1
Sequence: TTGCGGTGTCACGCAG-(16)-TTTCGG
Locus tag: BSU31720
BSU31720 -145 8.1 TTGCGGTGTCACGCAG-(16)-TTTCGG
Supported by regulated orthologs from reference regulons
Ortholog gene name: degQ
Ortholog function: Degradation enzyme regulation protein DegQ
Bacillus subtilis subsp. subtilis str. 168 BSU31720 -145 8.1 TTGCGGTGTCACGCAG-(16)-TTTCGG
Bacillus amyloliquefaciens FZB42 RBAM_028800 -146 8.1 TTGCGGTGTCACGCAG-(17)-TTTCGG
Bacillus pumilus SAFR-032 BPUM_2841 -145 8.4 TTGCGGTATCACGCAC-(16)-TTTCGG
Bacillus licheniformis DSM 13 BLi03360 -143 8.4 TTGCGGTGTAACGCAT-(16)-TTTCGG
Position: -106
Score: 8.4
Sequence: ATGCGGTGTAACGAAA-(7)-TTGCGG
Locus tag: BSU37460
BSU37460 -106 8.4 ATGCGGTGTAACGAAA-(7)-TTGCGG
Supported by regulated orthologs from reference regulons
Ortholog gene name: rapF
Ortholog function: Response regulator aspartate phosphatase
Bacillus subtilis subsp. subtilis str. 168 BSU37460 -106 8.4 ATGCGGTGTAACGAAA-(7)-TTGCGG
© 2009-2020 RegPrecise