Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of TnrA regulog to Bacillus subtilis subsp. subtilis str. 168

Reference regulog properties
Source regulog: TnrA - Bacillales
Regulator type: Transcription factor
Regulator family: MerR
Regulation mode: repressor (activator)
Biological process: Nitrogen assimilation
Effector: NrgB, ammonium uptake protein; NrgA, ammonium uptake protein; Feedback-inhibited GlnA, glutamine synthetase
Phylum: Firmicutes
Propagated regulon:
Target genome Bacillus subtilis subsp. subtilis str. 168
Orthologous TF(s) BSU13310
Regulated genes 54
Built upon 304 sites [see more]
Predicted regulatory interactions in Bacillus subtilis subsp. subtilis str. 168
Locus tag Position Score Sequence
Position: -84
Score: 3.9
Sequence: TGAGAGAAAAGCTGACT
Locus tag: BSU02690
BSU02690 -84 3.9 TGAGAGAAAAGCTGACT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ansZ
Ortholog function: L-asparaginase (EC 3.5.1.1)
Bacillus subtilis subsp. subtilis str. 168 BSU02690 -84 3.9 TGAGAGAAAAGCTGACT
Position: -48
Score: 4.4
Sequence: TATGATAAAATATAACA
Position: 1
Score: 3.5
Sequence: TGAGAGCAAAGATTCCA
Locus tag: BSU02820
BSU02820 -48 4.4 TATGATAAAATATAACA
1 3.5 TGAGAGCAAAGATTCCA
Supported by regulated orthologs from reference regulons
Ortholog gene name: rapJ
Ortholog function: Response regulator aspartate phosphatase I (EC 3.1.-.-)
Bacillus subtilis subsp. subtilis str. 168 BSU02820 -48 4.4 TATGATAAAATATAACA
Bacillus amyloliquefaciens FZB42 RBAM_003080 -48 4.4 TATGATAAAATATAACA
Bacillus pumilus SAFR-032 BPUM_1615 -89 3.4 TTATGTAATAACTTACA
Bacillus licheniformis DSM 13 BLi03446 -107 4.1 TGTGAAAAATTATTACT
Position: -85
Score: 5.3
Sequence: TGTTACATTTTATAACA
Locus tag: BSU03300
BSU03300 -85 5.3 TGTTACATTTTATAACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: nasD
Ortholog function: Nitrite reductase [NAD(P)H] large subunit (EC 1.7.1.4)
Bacillus subtilis subsp. subtilis str. 168 BSU03300 -95 4.1 TCGTATATTTTGTTACA
-85 5.3 TGTTACATTTTATAACA
Bacillus amyloliquefaciens FZB42 RBAM_003510 -84 4.9 TGTTACATTTCATAACA
Bacillus licheniformis DSM 13 BLi00484 -87 5 TGTCAGGAAATGTAACA
Geobacillus kaustophilus HTA426 GK1868 -286 4.6 TGTGATAAAAAGTTACA
-202 5.2 TGTTATATAAACTGACA
Bacillus halodurans C-125 BH0613 -80 4.6 TGTAAGATATCCTCCCA
Bacillus clausii KSM-K16 ABC1621 -89 5.2 TGTCACAAAATATTACA
Position: -98
Score: 4.9
Sequence: TGTAAGTTTTTGTGACA
Locus tag: BSU03320
BSU03320 -98 4.9 TGTAAGTTTTTGTGACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: nasB
Ortholog function: Nitrite reductase [NAD(P)H] large subunit (EC 1.7.1.4)
Bacillus subtilis subsp. subtilis str. 168 BSU03320 -98 4.9 TGTAAGTTTTTGTGACA
Bacillus amyloliquefaciens FZB42 RBAM_003530 -100 4.8 TGTAAGATAATGCGACA
Bacillus licheniformis DSM 13 BLi00482 -87 5 TGTCAGGAAATGTAACA
Bacillus clausii KSM-K16 ABC1623 -89 5.2 TGTCACAAAATATTACA
Paenibacillus sp. JDR-2 Pjdr2_2175 -223 4 TGTCAATAAACTTAACA
-159 4 TGTGACCTATATTGACA
Position: -98
Score: 4.9
Sequence: TGTCACAAAAACTTACA
Locus tag: BSU03330
BSU03330 -98 4.9 TGTCACAAAAACTTACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: nasA
Ortholog function: Nitrate/nitrite transporter
Bacillus subtilis subsp. subtilis str. 168 BSU03330 -98 4.9 TGTCACAAAAACTTACA
Bacillus amyloliquefaciens FZB42 RBAM_003540 -97 4.8 TGTCGCATTATCTTACA
Bacillus licheniformis DSM 13 BLi00365 -87 4.7 TGTTAGTAAAGCTTACA
Bacillus clausii KSM-K16 ABC1625 -89 5.2 TGTCACAAAATATTACA
Position: -212
Score: 3.6
Sequence: TCTAAAATTTTATTAAA
Position: -175
Score: 4.9
Sequence: TGTAAGAAAATCTCACG
Locus tag: BSU03670
BSU03670 -212 3.6 TCTAAAATTTTATTAAA
-175 4.9 TGTAAGAAAATCTCACG
Supported by regulated orthologs from reference regulons
Ortholog gene name: yclF
Ortholog function: Di-tripeptide-proton ABC symporter
Bacillus subtilis subsp. subtilis str. 168 BSU03670 -212 3.6 TCTAAAATTTTATTAAA
-175 4.9 TGTAAGAAAATCTCACG
Bacillus amyloliquefaciens FZB42 RBAM_003840 -211 3.4 CTTTAAATTTTATTAAA
-174 4.9 AGTCAGATAATATAACA
Bacillus pumilus SAFR-032 BPUM_0343 -183 3.8 TTAAATAAATTCTTTCA
-141 3.7 TGAAAGAATTTTTCATA
Bacillus licheniformis DSM 13 BLi00449 -180 3.9 TATTAAAAAATCTTTCA
Geobacillus kaustophilus HTA426 GK2020 -44 3.5 TGAATTATTATATTAAA
Position: -121
Score: 4.9
Sequence: CGTGAGATTTTCTTACA
Locus tag: BSU03680
BSU03680 -121 4.9 CGTGAGATTTTCTTACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: yclG
Ortholog function: Pectate lyase family protein
Bacillus subtilis subsp. subtilis str. 168 BSU03680 -121 4.9 CGTGAGATTTTCTTACA
Bacillus amyloliquefaciens FZB42 RBAM_003850 -121 4.9 TGTTATATTATCTGACT
Bacillus pumilus SAFR-032 BPUM_0344 -73 3.8 TGAAAGAATTTATTTAA
Bacillus licheniformis DSM 13 BLi00451 1 3.9 TGAAAGATTTTTTAATA
Position: -145
Score: 4.9
Sequence: TGGTAGGTTTTCTGACA
Locus tag: BSU04050
BSU04050 -145 4.9 TGGTAGGTTTTCTGACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: lamB
Ortholog function: Lactam utilization protein LamB
Bacillus subtilis subsp. subtilis str. 168 BSU04050 -145 4.9 TGGTAGGTTTTCTGACA
-52 3.9 CGGGACAATAAATGACA
Bacillus amyloliquefaciens FZB42 RBAM_004280 -137 4.9 TGGTAGGTTTTCTGACA
Bacillus pumilus SAFR-032 BPUM_0379 -113 5.5 TGTTATATTTTCTAACA
Bacillus licheniformis DSM 13 BLi00498 -155 4.6 TGTGAGGTTTCCTAACA
Position: -55
Score: 4.5
Sequence: AGGAAGAAAATCTAACA
Locus tag: BSU04170
BSU04170 -55 4.5 AGGAAGAAAATCTAACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ydaB
Ortholog function: Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
Bacillus subtilis subsp. subtilis str. 168 BSU04170 -55 4.5 AGGAAGAAAATCTAACA
Bacillus amyloliquefaciens FZB42 RBAM_004400 -54 4.5 AGAAAGAAAATCTGACA
Bacillus pumilus SAFR-032 BPUM_0239 -70 4.5 TGAGATAAAATCTGCCA
Bacillus licheniformis DSM 13 BLi00300 3 4.3 CGTCACATAATCTCACC
Position: -43
Score: 4.9
Sequence: TGGAATAAAATCTCACA
Locus tag: BSU07560
BSU07560 -43 4.9 TGGAATAAAATCTCACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: pel
Ortholog function: Pectate lyase precursor (EC 4.2.2.2)
Bacillus subtilis subsp. subtilis str. 168 BSU07560 -43 4.9 TGGAATAAAATCTCACA
Bacillus amyloliquefaciens FZB42 RBAM_007720 -40 4.4 TGTAATAAATTGGAACA
Bacillus licheniformis DSM 13 BLi01404 -114 4.6 TGTCATAAAATTTGAAA
Position: -40
Score: 4.7
Sequence: TGTTAAATAATTTCACA
Locus tag: BSU11190
BSU11190 -40 4.7 TGTTAAATAATTTCACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: argC
Ortholog function: N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38)
Bacillus subtilis subsp. subtilis str. 168 BSU11190 -40 4.7 TGTTAAATAATTTCACA
16 4.2 TGTTAGAAGATGGGACA
Bacillus amyloliquefaciens FZB42 RBAM_011190 -38 4.7 TGTTAAATAATTTCACA
Bacillus pumilus SAFR-032 BPUM_1042 -34 4.7 TGTTAAATAATTTCACA
Bacillus licheniformis DSM 13 BLi01206 -40 4.7 TGTTAAATAATTTCACA
Position: -119
Score: 4.1
Sequence: TGTAATAATATACAACT
Locus tag: BSU11360
BSU11360 -119 4.1 TGTAATAATATACAACT
Supported by regulated orthologs from reference regulons
Ortholog gene name: appD
Ortholog function: Oligopeptide ABC transporter (ATP-binding protein)
Bacillus subtilis subsp. subtilis str. 168 BSU11360 -119 4.1 TGTAATAATATACAACT
Bacillus amyloliquefaciens FZB42 RBAM_011360 -101 4.1 TGTAATAATATACAACT
Bacillus clausii KSM-K16 ABC2416 -111 4.2 TGTGAGAAAATCTATTA
Oceanobacillus iheyensis HTE831 OB2264 -146 4.4 TGTCGAATTTTGTAACA
Position: -231
Score: 4.3
Sequence: TGGAAGAAAAACTAACG
Locus tag: BSU11430
BSU11430 -231 4.3 TGGAAGAAAAACTAACG
Supported by regulated orthologs from reference regulons
Ortholog gene name: oppA
Ortholog function: Oligopeptide ABC transporter (binding lipoprotein)
Bacillus subtilis subsp. subtilis str. 168 BSU11430 -231 4.3 TGGAAGAAAAACTAACG
Bacillus amyloliquefaciens FZB42 RBAM_011430 -231 4.3 TGACAGAAAAACTGACC
Bacillus licheniformis DSM 13 BLi01232 -249 4.9 TGGCAGAAAACCTGACA
Position: -81
Score: 5.5
Sequence: TGTTAGAAAATATGACA
Locus tag: BSU13310
BSU13310 -81 5.5 TGTTAGAAAATATGACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: tnrA
Ortholog function: Transcriptional regulator of nitrogen assimilation, MerR family
Bacillus subtilis subsp. subtilis str. 168 BSU13310 -124 3.9 TGTTAATTTTTCTTCCG
-81 5.5 TGTTAGAAAATATGACA
Bacillus amyloliquefaciens FZB42 RBAM_013130 -124 4.1 TGTCAATTTTTCTGCCG
-81 4.8 CGTCAGAAAACCTGACA
Bacillus pumilus SAFR-032 BPUM_1230 -121 4 TGTCAACTTTCCTTCCA
-80 5.5 TGTTATATTTTCTAACA
Bacillus licheniformis DSM 13 BLi01490 -124 3.8 TGTAAACTTTTCTTCCG
-81 5.6 TGTTAGATTTTCTGACA
Anoxybacillus flavithermus WK1 Aflv_1544 -113 4.9 TGTTACTTTTTATAACA
-82 4.9 TGTTACTTTTTATAACA
-27 5.4 TGTTATAAAATATGACA
Geobacillus kaustophilus HTA426 GK1860 -86 3.9 TGTTAATTTTATTTACA
-33 4.6 CGTTAGAAAATATAACG
Bacillus halodurans C-125 BH1494 -110 5.5 TGTAAGAAAATCTAACA
Bacillus clausii KSM-K16 ABC1760 -99 5.5 TGTTAGATTTTCTTACA
-57 5 TGTGATATATTGTTACA
Oceanobacillus iheyensis HTE831 OB1650 -80 5.1 TGTTAGAAATACTAACA
-57 4.3 TGACATATAAGCTGACG
Paenibacillus sp. JDR-2 Pjdr2_5154 -302 5.7 TGTTAGATAATCTAACA
-41 5 TGTTAGAAAACATTACA
Position: -130
Score: 5.5
Sequence: TGTCATATTTTCTAACA
Locus tag: BSU13320
BSU13320 -130 5.5 TGTCATATTTTCTAACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ykzB
Ortholog function: Hypothetical protein
Bacillus subtilis subsp. subtilis str. 168 BSU13320 -130 5.5 TGTCATATTTTCTAACA
-87 3.9 CGGAAGAAAAATTAACA
Bacillus amyloliquefaciens FZB42 RBAM_013140 -130 4.8 TGTCAGGTTTTCTGACG
-87 4.1 CGGCAGAAAAATTGACA
Anoxybacillus flavithermus WK1 Aflv_1546 -172 5.4 TGTCATATTTTATAACA
-117 4.9 TGTTATAAAAAGTAACA
-86 4.9 TGTTATAAAAAGTAACA
Geobacillus kaustophilus HTA426 GK1862 -176 4.6 CGTTATATTTTCTAACG
-123 3.9 TGTAAATAAAATTAACA
Position: -59
Score: 5
Sequence: TGACACATAATATAACA
Locus tag: BSU17450
BSU17450 -59 5 TGACACATAATATAACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: glnR
Ortholog function: Transcriptional regulator of nitrogen excess response, MerR family
Bacillus subtilis subsp. subtilis str. 168 BSU17450 -82 4.3 TGTTAAGAATCCTTACA
-59 5 TGACACATAATATAACA
Bacillus amyloliquefaciens FZB42 RBAM_017250 -82 4.3 TGTTAAGATTCCTTACA
-59 4.9 TGACACAAAATATAACA
Bacillus pumilus SAFR-032 BPUM_1636 -82 4.4 TGTTAATATTCCTAACA
-59 5.1 TGACATATAATATAACA
-54 4.2 TATAATATAACATGACA
Bacillus licheniformis DSM 13 BLi01992 -81 4.2 TGTAAAGAATCCTTACA
-58 5 TGACACATTATATAACA
Anoxybacillus flavithermus WK1 Aflv_1508 -82 4.7 TGTGATAAAATGTAACG
-59 4.3 TGACATATAAGTTAACA
Position: -240
Score: 3.9
Sequence: GGGAAGAAATGATTACA
Position: -61
Score: 5.2
Sequence: TGTTAAAAAATCTAACA
Locus tag: BSU18120
BSU18120 -240 3.9 GGGAAGAAATGATTACA
-61 5.2 TGTTAAAAAATCTAACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: alsT
Ortholog function: Sodium/alanine symporter family protein
Bacillus subtilis subsp. subtilis str. 168 BSU18120 -240 3.9 GGGAAGAAATGATTACA
-61 5.2 TGTTAAAAAATCTAACA
Bacillus amyloliquefaciens FZB42 RBAM_017940 -64 4.8 TGTTAAAAGATCTAACA
Bacillus licheniformis DSM 13 BLi02069 -51 4.8 TGTTAGAAAACTTAACA
Bacillus halodurans C-125 BH1772 -191 3.9 TGTCATTTAATGCATCA
Position: -51
Score: 5
Sequence: TGTTAGATTTTATGACC
Locus tag: BSU18450
BSU18450 -51 5 TGTTAGATTTTATGACC
Supported by regulated orthologs from reference regulons
Ortholog gene name: gltA
Ortholog function: Glutamate synthase [NADPH] large chain (EC 1.4.1.13)
Bacillus subtilis subsp. subtilis str. 168 BSU18450 -51 5 TGTTAGATTTTATGACC
Bacillus amyloliquefaciens FZB42 RBAM_018620 -52 5 TGTCAGATTTTATGACC
Bacillus pumilus SAFR-032 BPUM_1814 -54 4.6 TGTGAGATTTTATTACT
Bacillus licheniformis DSM 13 BLi02162 -54 4.9 TGTAAGATTTTATGACC
Position: -112
Score: 5
Sequence: GGTCATAAAATCTAACA
Locus tag: BSU18460
BSU18460 -112 5 GGTCATAAAATCTAACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: gltC
Ortholog function: Transcriptional regulator of glutamate biosynthesis (LysR family)
Bacillus subtilis subsp. subtilis str. 168 BSU18460 -112 5 GGTCATAAAATCTAACA
Bacillus amyloliquefaciens FZB42 RBAM_018630 -110 5 GGTCATAAAATCTGACA
Bacillus pumilus SAFR-032 BPUM_1815 -116 4.6 AGTAATAAAATCTCACA
Bacillus licheniformis DSM 13 BLi02163 -111 4.9 GGTCATAAAATCTTACA
Position: -61
Score: 4.8
Sequence: TGTGATCTTTTCTTACA
Locus tag: BSU19579
BSU19579 -61 4.8 TGTGATCTTTTCTTACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: yhjC
Ortholog function: Hypothetical protein
Bacillus subtilis subsp. subtilis str. 168 BSU19579 -61 4.8 TGTGATCTTTTCTTACA
Bacillus pumilus SAFR-032 BPUM_1877 -59 4.9 TGTGATCTAATCTGACA
1 4 TGCAAGGAAATTTGACA
Bacillus licheniformis DSM 13 BLi02277 -62 4.9 TGTGATTAAATCTGACA
Position: -135
Score: 4.3
Sequence: TGTGTCATTATCTCACA
Locus tag: BSU25289
BSU25289 -135 4.3 TGTGTCATTATCTCACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: yqzL
Ortholog function: Hypothetical protein
Bacillus subtilis subsp. subtilis str. 168 BSU25289 -135 4.3 TGTGTCATTATCTCACA
Bacillus pumilus SAFR-032 BPUM_2261 -134 5.5 TGTCATAAAATCTGACA
Bacillus halodurans C-125 BH1368 -216 4.4 TGCAAGAAAATGTCACA
Position: -28
Score: 4
Sequence: GGTCAAATTTTCTGATA
Locus tag: BSU27430
BSU27430 -28 4 GGTCAAATTTTCTGATA
Supported by regulated orthologs from reference regulons
Ortholog gene name: glnQ
Ortholog function: Glutamine transport ATP-binding protein GlnQ (TC 3.A.1.3.2)
Bacillus subtilis subsp. subtilis str. 168 BSU27430 -28 4 GGTCAAATTTTCTGATA
Bacillus amyloliquefaciens FZB42 RBAM_024530 -123 3.5 TATCAGAAATTACGAAA
Bacillus pumilus SAFR-032 BPUM_2382 -93 3.8 TGTTAAAAATGAATACA
Bacillus clausii KSM-K16 ABC0770 -8 3.4 GGACAGCAATGATCACA
Paenibacillus sp. JDR-2 Pjdr2_2874 -63 4.7 TGTTATCTAACCTAACA
Position: -96
Score: 4.9
Sequence: GGTCATATAATGTGACA
Locus tag: BSU27810
BSU27810 -96 4.9 GGTCATATAATGTGACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: yrbD
Ortholog function: Sodium/proton-dependent alanine transporter
Bacillus subtilis subsp. subtilis str. 168 BSU27810 -96 4.9 GGTCATATAATGTGACA
Position: -141
Score: 5.1
Sequence: TGGAAGATTTTATAACA
Locus tag: BSU28320
BSU28320 -141 5.1 TGGAAGATTTTATAACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ysnD
Ortholog function: Hypothetical protein
Bacillus subtilis subsp. subtilis str. 168 BSU28320 -141 5.1 TGGAAGATTTTATAACA
-97 4 TGACAGATCATCTTGCA
Position: -63
Score: 4.6
Sequence: CGTGAAAAAATCTAACA
Locus tag: BSU30360
BSU30360 -63 4.6 CGTGAAAAAATCTAACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: yttA
Ortholog function: Hypothetical protein
Bacillus subtilis subsp. subtilis str. 168 BSU30360 -63 4.6 CGTGAAAAAATCTAACA
19 3.7 TCTTAGGTTTTCTGGCA
Position: -78
Score: 4.4
Sequence: TGTCACATGATCTGACT
Locus tag: BSU32090
BSU32090 -78 4.4 TGTCACATGATCTGACT
Supported by regulated orthologs from reference regulons
Ortholog gene name: yuiA
Ortholog function: Uncharacterized conserved protein contain two CXXC motifs
Bacillus subtilis subsp. subtilis str. 168 BSU32090 -78 4.4 TGTCACATGATCTGACT
Bacillus amyloliquefaciens FZB42 RBAM_029140 -76 4.8 TGTTACATATTCTGACT
Bacillus halodurans C-125 BH3406 -86 4.1 TGTGAGAATACCTCGCA
Position: -43
Score: 4.6
Sequence: TGGTATAATTAATAACA
Locus tag: BSU32110
BSU32110 -43 4.6 TGGTATAATTAATAACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: yumC
Ortholog function: Thioredoxin reductase (EC 1.8.1.9)
Bacillus subtilis subsp. subtilis str. 168 BSU32110 -43 4.6 TGGTATAATTAATAACA
Bacillus amyloliquefaciens FZB42 RBAM_029160 -229 3.9 TGAAATGAAATATAAAA
-42 4.9 TGTTATAATTAATAACA
Bacillus halodurans C-125 BH3408 -277 4.3 TGGCAAAAAAAGTGACA
-125 4.3 TGACAGATTTATTTACA
Position: -51
Score: 5.1
Sequence: TGTTACATAAACTGACA
Locus tag: BSU32410
BSU32410 -51 5.1 TGTTACATAAACTGACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: pucH
Ortholog function: Allantoinase (EC 3.5.2.5)
Bacillus subtilis subsp. subtilis str. 168 BSU32410 -51 5.1 TGTTACATAAACTGACA
Bacillus amyloliquefaciens FZB42 RBAM_029500 -50 4.9 TGTGATAAAAACTGACA
Bacillus halodurans C-125 BH2309 -260 4.5 TGTCATAAAGCCTAACA
-71 4.2 TATCAGAAAATATAAAA
Bacillus clausii KSM-K16 ABC3732 -173 4.2 TGTAAACAATCCTAACA
Bacillus clausii KSM-K16 ABC3732 -173 4.2 TGTAAACAATCCTAACA
Paenibacillus sp. JDR-2 Pjdr2_3313 -179 4.1 TGTGATCTATTGTTACG
-96 4.3 TGTAAGATATATTGACG
Position: -140
Score: 5.1
Sequence: TGTCAGTTTATGTAACA
Locus tag: BSU32420
BSU32420 -140 5.1 TGTCAGTTTATGTAACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: pucR
Ortholog function: Transcriptional regulator of the purine degradation operon, PucR family
Bacillus subtilis subsp. subtilis str. 168 BSU32420 -140 5.1 TGTCAGTTTATGTAACA
Bacillus amyloliquefaciens FZB42 RBAM_029510 -146 4.9 TGTCAGTTTTTATCACA
Bacillus pumilus SAFR-032 BPUM_2903 -142 4.4 TGTCATGTTAGTTGACA
Bacillus licheniformis DSM 13 BLi03436 -138 4.6 TGTTATATTTCTTTACA
Position: -140
Score: 5.3
Sequence: TGTTACATTTTCTTACA
Locus tag: BSU32430
BSU32430 -140 5.3 TGTTACATTTTCTTACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: pucJ
Ortholog function: Xanthine permease
Bacillus subtilis subsp. subtilis str. 168 BSU32430 -140 5.3 TGTTACATTTTCTTACA
-34 3.9 TGTTACTAAAGTTCACA
Position: -125
Score: 4.7
Sequence: TGTTTCATTTTCTGACA
Locus tag: BSU32510
BSU32510 -125 4.7 TGTTTCATTTTCTGACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: pucA
Ortholog function: Xanthine dehydrogenase subunit A
Bacillus subtilis subsp. subtilis str. 168 BSU32510 -125 4.7 TGTTTCATTTTCTGACA
-101 4 AGTCATTTTTTCTTCCA
Bacillus clausii KSM-K16 ABC3744 -270 4.5 TGTGAAAAAACCTTACA
-141 4 GGGGAGAAGATCTAACA
Paenibacillus sp. JDR-2 Pjdr2_3325 -55 4.9 TGTTATATAAAGTAACA
Position: -39
Score: 4.8
Sequence: CGTCAGAAAATTTAACA
Locus tag: BSU33460
BSU33460 -39 4.8 CGTCAGAAAATTTAACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: yvgT
Ortholog function: Hypothetical membrane protein
Bacillus subtilis subsp. subtilis str. 168 BSU33460 -39 4.8 CGTCAGAAAATTTAACA
Bacillus amyloliquefaciens FZB42 RBAM_030630 -37 4.8 CGTCAGAAAATTTAACA
Position: -98
Score: 4.4
Sequence: GGGAAGATTATGTTACA
Locus tag: BSU35900
BSU35900 -98 4.4 GGGAAGATTATGTTACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: capB
Ortholog function: Poly-gamma-glutamate synthase subunit (EC 6.3.2.-)
Bacillus subtilis subsp. subtilis str. 168 BSU35900 -98 4.4 GGGAAGATTATGTTACA
Bacillus pumilus SAFR-032 BPUM_3259 -106 4.9 TGAAAGATTATGTTACA
Position: -83
Score: 4
Sequence: CGTCAGTTTTTCTGCCG
Locus tag: BSU36100
BSU36100 -83 4 CGTCAGTTTTTCTGCCG
Supported by regulated orthologs from reference regulons
Ortholog gene name: ywrD
Ortholog function: Gamma-glutamyltranspeptidase (EC 2.3.2.2)
Bacillus subtilis subsp. subtilis str. 168 BSU36100 -83 4 CGTCAGTTTTTCTGCCG
Bacillus amyloliquefaciens FZB42 RBAM_033270 -78 4.9 TGTGAGATTTTCTTTCA
Bacillus licheniformis DSM 13 BLi03850 -167 3.6 TTTTGTAAATTGTATCA
-91 3.8 CGTTAGTTTTTCTTCCC
Paenibacillus sp. JDR-2 Pjdr2_5903 -34 3.6 GGTTAGTAAACCTGACT
Position: -78
Score: 4.3
Sequence: AGTTATATTAAGTGACA
Position: -56
Score: 4.3
Sequence: TGTCAAAAAACATAACG
Locus tag: BSU36470
BSU36470 -78 4.3 AGTTATATTAAGTGACA
-56 4.3 TGTCAAAAAACATAACG
Supported by regulated orthologs from reference regulons
Ortholog gene name: pucI
Ortholog function: Allantoin permease
Bacillus subtilis subsp. subtilis str. 168 BSU36470 -78 4.3 AGTTATATTAAGTGACA
-66 3.7 TGACATCTAATGTCAAA
-56 4.3 TGTCAAAAAACATAACG
Bacillus amyloliquefaciens FZB42 RBAM_033650 -32 3.9 TGTAAGGAAAACGTACA
Position: -102
Score: 5.2
Sequence: TGTCAGGAAATCTTACA
Locus tag: BSU36510
BSU36510 -102 5.2 TGTCAGGAAATCTTACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: nrgA
Ortholog function: Ammonium transporter
Bacillus subtilis subsp. subtilis str. 168 BSU36510 -102 5.2 TGTCAGGAAATCTTACA
Bacillus amyloliquefaciens FZB42 RBAM_033680 -98 5.2 TGTCAGATAACCTTACA
Bacillus licheniformis DSM 13 BLi03888 -103 5.2 TGTAAGGAAATCTGACA
Position: -154
Score: 4.7
Sequence: TGTCAGAAAATCTGCAA
Locus tag: BSU36920
BSU36920 -154 4.7 TGTCAGAAAATCTGCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: rpiB
Ortholog function: Ribose 5-phosphate isomerase B (EC 5.3.1.6)
Bacillus subtilis subsp. subtilis str. 168 BSU36920 -154 4.7 TGTCAGAAAATCTGCAA
Bacillus amyloliquefaciens FZB42 RBAM_034080 -131 4.7 TGTCAGAAAATCTGCAA
Position: -53
Score: 5.1
Sequence: TGTCAGAAAAAATAACA
Locus tag: BSU37950
BSU37950 -53 5.1 TGTCAGAAAAAATAACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ywdI
Ortholog function: Hypothetical protein
Bacillus subtilis subsp. subtilis str. 168 BSU37950 -53 5.1 TGTCAGAAAAAATAACA
Bacillus amyloliquefaciens FZB42 RBAM_035200 -92 4.7 CGTCAGAAAAAATAACA
Position: -117
Score: 3.6
Sequence: TGTAACTATAAATGATA
Position: -105
Score: 3.4
Sequence: TGATAATAATTATAAGA
Position: -31
Score: 4.1
Sequence: TCGTACATTTTATTACA
Locus tag: BSU38850
BSU38850 -117 3.6 TGTAACTATAAATGATA
-105 3.4 TGATAATAATTATAAGA
-31 4.1 TCGTACATTTTATTACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: yxkC
Ortholog function: Hypothetical protein
Bacillus subtilis subsp. subtilis str. 168 BSU38850 -117 3.6 TGTAACTATAAATGATA
-31 4.1 TCGTACATTTTATTACA
Bacillus amyloliquefaciens FZB42 RBAM_036070 -68 3.3 CTATAGGTTATTTTACA
Position: -66
Score: 4.6
Sequence: TGTGACATCTTCTTACA
Locus tag: BSU40470
BSU40470 -66 4.6 TGTGACATCTTCTTACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: yycC
Ortholog function: Hypothetical protein
Bacillus subtilis subsp. subtilis str. 168 BSU40470 -66 4.6 TGTGACATCTTCTTACA
Bacillus amyloliquefaciens FZB42 RBAM_037500 -64 4.1 TGTCATATCCTCTTACG
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