Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of CcpA regulog to Bacillus sp. NRRL B-14911

Reference regulog properties
Source regulog: CcpA - Bacillales
Regulator type: Transcription factor
Regulator family: LacI
Regulation mode:
Biological process: Carbon catabolism
Effector: HPr, phosphocarrier protein
Phylum: Firmicutes
Propagated regulon:
Target genome Bacillus sp. NRRL B-14911
Orthologous TF(s) B14911_23835
Regulated genes 28
Built upon 559 sites [see more]
Predicted regulatory interactions in Bacillus sp. NRRL B-14911
Locus tag Position Score Sequence
Position: -218
Score: 4.6
Sequence: ATGATAGCGTTTGCTT
Locus tag: B14911_02634
B14911_02634 -218 4.6 ATGATAGCGTTTGCTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: iolJ
Ortholog function: Fructose-bisphosphate aldolase class II (EC 4.1.2.13)
Bacillus cereus ATCC 14579 BC5335 -184 4.5 AAAAAAGCGTTTACAT
Paenibacillus sp. JDR-2 Pjdr2_6054 -236 4.5 ATTATAGCGCTTACAA
Position: -83
Score: 4.6
Sequence: TTGAAAGGGGTTTCAT
Locus tag: B14911_04114
B14911_04114 -83 4.6 TTGAAAGGGGTTTCAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: endR
Ortholog function: Probable HTH-type transcriptional regulator endR, LacI family
Bacillus amyloliquefaciens FZB42 RBAM_018000 0 4.3 ATGAAAGCGGTTCTAG
Geobacillus kaustophilus HTA426 GK1942 -50 4.5 ATGAAAACGCTTTTGA
Position: 9
Score: 4.3
Sequence: AAGAAAGCGGTTACGA
Locus tag: B14911_25230
B14911_25230 9 4.3 AAGAAAGCGGTTACGA
Supported by regulated orthologs from reference regulons
Ortholog gene name: citS
Ortholog function: Two-component sensor kinase
Bacillus amyloliquefaciens FZB42 RBAM_007780 1297 4.5 TTGATAACGCTTTCGA
Bacillus cereus ATCC 14579 BC0936 -187 4.9 ATGAAAGCGTGTTCAT
Bacillus clausii KSM-K16 ABC1011 -42 4.2 TTGAAACCGTTATACT
Bacillus halodurans C-125 BH3839 -41 4.8 ATGAAAGCGTTTATTA
Bacillus licheniformis DSM 13 BLi00225 1303 4.5 TTGATAACGCTTTCGA
Bacillus subtilis subsp. subtilis str. 168 BSU07580 1297 4.5 TTGATAACGCTTTCGA
Position: -22
Score: 4.9
Sequence: ATGAAAGCGCTATTAT
Locus tag: B14911_13062
B14911_13062 -22 4.9 ATGAAAGCGCTATTAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: treP
Ortholog function: PTS system, trehalose-specific enzyme II, BC component (EC 2.7.1.69)
Bacillus amyloliquefaciens FZB42 RBAM_007970 318 4 GTGAAAACGCTTGCGG
Bacillus cereus ATCC 14579 BC0631 234 4.4 TTGATAACGCTTGCAG
Bacillus halodurans C-125 BH2216 136 4.4 TTGAAAGCCTTGACAT
318 4.4 GTGAAAACGCTTGCTG
Bacillus licheniformis DSM 13 BLi00796 318 4.6 GTGAAAACGCTTGCAG
Bacillus subtilis subsp. subtilis str. 168 BSU07800 318 4.6 GTGAAAACGCTTGCAG
Position: -78
Score: 4.8
Sequence: ATGAAAACGATTACTA
Position: -57
Score: 4.6
Sequence: TTGTAAACGATTTCAG
Locus tag: B14911_13882
B14911_13882 -78 4.8 ATGAAAACGATTACTA
-57 4.6 TTGTAAACGATTTCAG
Supported by regulated orthologs from reference regulons
Ortholog gene name: kdgT
Ortholog function: 2-keto-3-deoxygluconate permease (KDG permease)
Bacillus clausii KSM-K16 ABC0308 -60 4.3 TTTTAAGCGTTTCCAG
Oceanobacillus iheyensis HTE831 OB1011 -71 4.9 TTGAAAACGCTTTATA
Position: -64
Score: 4.9
Sequence: TTGAAAGCATTTACAT
Locus tag: B14911_16025
B14911_16025 -64 4.9 TTGAAAGCATTTACAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: xylA
Ortholog function: Xylose isomerase (EC 5.3.1.5)
Bacillus amyloliquefaciens FZB42 RBAM_017350 34 5.1 TTGAAAGCGCAAACAA
Bacillus clausii KSM-K16 ABC0572 -72 4.7 TTGACACCGCTTACAA
Bacillus halodurans C-125 BH2757 -33 4.7 TTGATAACGCTTACTT
Bacillus licheniformis DSM 13 BLi04048 -109 4.5 TTGAAAGCGATTAATT
Bacillus subtilis subsp. subtilis str. 168 BSU17600 34 4.7 TTGGAAGCGCAAACAA
Geobacillus kaustophilus HTA426 GK1875 -59 5 ATGAAAGCGTTATAAT
Position: 9
Score: 4.6
Sequence: AAGAAAGCGATTACAA
Locus tag: B14911_16045
B14911_16045 9 4.6 AAGAAAGCGATTACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: BH3680
Ortholog function: Predicted beta-xyloside ABC transporter, substrate-binding component
Bacillus halodurans C-125 BH3680 6 4.9 AGGAAAACGCTTACAA
Oceanobacillus iheyensis HTE831 OB3123 9 4.7 AAGAAAGCGTTTACAG
Paenibacillus sp. JDR-2 Pjdr2_0728 -8 4.6 TTGTAAACGTGTTCAA
Position: -139
Score: 4.4
Sequence: TTGAAAACGTTTTATC
Position: 0
Score: 4.2
Sequence: ATGAAAACGCCATCCA
Locus tag: B14911_27870
B14911_27870 -139 4.4 TTGAAAACGTTTTATC
0 4.2 ATGAAAACGCCATCCA
Supported by regulated orthologs from reference regulons
Ortholog gene name: odhA
Ortholog function: 2-oxoglutarate dehydrogenase E1 component (EC 1.2.4.2)
Bacillus amyloliquefaciens FZB42 RBAM_019130 -101 4.7 TTGGAAGCGTTTTTAT
Bacillus cereus ATCC 14579 BC1252 -101 4.3 AAGAAAACATTTACAT
Bacillus clausii KSM-K16 ABC2114 -63 4.8 TTGTAAGCGCTTGAAA
Bacillus halodurans C-125 BH2206 -64 5 ATGAAAGCGTTATAAA
Bacillus licheniformis DSM 13 BLi02260 -100 4.3 GTGGAAGCGTTTTTAT
Bacillus pumilus SAFR-032 BPUM_1862 -101 4.7 TTGGAAGCGTTTTATT
Bacillus subtilis subsp. subtilis str. 168 BSU19370 -101 4.7 TTGGAAGCGTTTTTAT
Geobacillus kaustophilus HTA426 GK1023 -123 4.1 GTGAAAACGTTTATAC
Oceanobacillus iheyensis HTE831 OB1089 -51 4.3 TTTGAACCGTTTTCAT
Paenibacillus sp. JDR-2 Pjdr2_4724 -242 4.4 ATGAATACGCTTTAAA
Position: -100
Score: 4.2
Sequence: TTGAAATCGATTCCAT
Locus tag: B14911_23292
B14911_23292 -100 4.2 TTGAAATCGATTCCAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: fruR
Ortholog function: Transcriptional regulator of fructose utilization, DeoR family
Anoxybacillus flavithermus WK1 Aflv_1478 -24 4.6 ATGTAAGCGATTTAAA
Bacillus amyloliquefaciens FZB42 RBAM_014120 -28 4.5 ATGAATACGTTTCCAA
Bacillus cereus ATCC 14579 BC3720 -46 4.3 TTGTGACCGTTTTCAT
Bacillus licheniformis DSM 13 BLi01652 -29 4.6 ATGAAGGCGTTTCCAA
Bacillus pumilus SAFR-032 BPUM_1334 -30 4.7 ATGAATACGTTTTCAA
Bacillus subtilis subsp. subtilis str. 168 BSU14380 -29 4.7 ATGAATACGTTTTCAT
Oceanobacillus iheyensis HTE831 OB0840 -113 5 TTGAAAGCGTTTTATT
Position: -125
Score: 5.2
Sequence: ATGGAAGCGTTTTCAT
Locus tag: B14911_09792
B14911_09792 -125 5.2 ATGGAAGCGTTTTCAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: licB
Ortholog function: PTS system, lichenan-specific IIB component (EC 2.7.1.69); PTS system, cellobiose-specific IIB component (EC 2.7.1.69)
Bacillus amyloliquefaciens FZB42 RBAM_035790 -75 5.1 ATGAAAGCGATTTCAT
Bacillus licheniformis DSM 13 BLi04089 -74 5.2 ATGAAAACGGTTTCAT
Bacillus pumilus SAFR-032 BPUM_3506 -71 5.3 ATGAAAGCGGTTTCAT
Bacillus subtilis subsp. subtilis str. 168 BSU38590 -77 5.1 ATGAAAGCGATTTCAT
Position: -23
Score: 5
Sequence: TTGATAACGCTTTCAT
Locus tag: B14911_09952
B14911_09952 -23 5 TTGATAACGCTTTCAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: rmgR
Ortholog function: Transcriptional regulator of rhamnogalacturonan utilization, AraC family
Bacillus clausii KSM-K16 ABC1143 -40 4.8 ATTTAAGCGCTTTCAT
Bacillus clausii KSM-K16 ABC1143 -40 4.8 ATTTAAGCGCTTTCAT
Bacillus halodurans C-125 BH0483 -228 5.1 TTGTAAACGCTATCAT
-36 5.4 TTGAAAGCGCTATCAA
Bacillus halodurans C-125 BH0483 -228 5.1 TTGTAAACGCTATCAT
-36 5.4 TTGAAAGCGCTATCAA
Oceanobacillus iheyensis HTE831 OB2093 -97 5.1 TTGAAAGCGGTATCAT
Oceanobacillus iheyensis HTE831 OB2093 -97 5.1 TTGAAAGCGGTATCAT
Position: -216
Score: 5.1
Sequence: TTGAAAGCGCTTTCTG
Locus tag: B14911_09992
B14911_09992 -216 5.1 TTGAAAGCGCTTTCTG
Supported by regulated orthologs from reference regulons
Ortholog gene name: ytcP
Ortholog function: ABC superfamily ATP binding cassette transporter, membrane protein
Bacillus clausii KSM-K16 ABC1146 76 4.7 ATGAAAGCGCTTCCTC
Bacillus halodurans C-125 BH0481 -66 4.9 ATGATAGCGCTTTCTT
Bacillus licheniformis DSM 13 BLi03169 -97 5.1 TTGACAGCGCTTACAA
Bacillus pumilus SAFR-032 BPUM_2666 -28 5 ATGATAACGCTTTCAA
Bacillus subtilis subsp. subtilis str. 168 BSU30170 -43 4.9 ATGATAACGCTTACAA
Position: -100
Score: 4.5
Sequence: ATGTTAACGTTAACAA
Position: -35
Score: 4.5
Sequence: TTGTTAACGTTAACAA
Locus tag: B14911_10037
B14911_10037 -100 4.5 ATGTTAACGTTAACAA
-35 4.5 TTGTTAACGTTAACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: uxaC
Ortholog function: Uronate isomerase (EC 5.3.1.12)
Bacillus amyloliquefaciens FZB42 RBAM_012380 -123 4.2 ATGTTAACGGATACAA
-38 4.5 TTGTTAACGTTAACAT
Bacillus licheniformis DSM 13 BLi03516 -75 4 ATGTTAACGTTCACAT
-43 4.5 TTGTTAACGTTAACAT
Bacillus pumilus SAFR-032 BPUM_2987 -73 4.8 TTGTAAACGATTACAA
Bacillus subtilis subsp. subtilis str. 168 BSU12300 -123 4.8 ATGACAGCGTTAACAT
-45 4.5 ATGTTAACGTTAACAT
Position: -157
Score: 4.7
Sequence: ATGAAAACGCTTTACT
Position: -47
Score: 4.8
Sequence: ATGAAAGCGCAGTCTA
Locus tag: B14911_00675
B14911_00675 -157 4.7 ATGAAAACGCTTTACT
-47 4.8 ATGAAAGCGCAGTCTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: sucC
Ortholog function: Succinyl-CoA ligase [ADP-forming] beta chain (EC 6.2.1.5)
Bacillus amyloliquefaciens FZB42 RBAM_015920 -52 4.8 ATGAAAGCGCAGTCTA
Bacillus licheniformis DSM 13 BLi01829 -53 4.8 ATGAAAGCGCAGTCTA
Bacillus pumilus SAFR-032 BPUM_1507 -57 4.8 ATGAAAGCGCAGTCTA
Bacillus subtilis subsp. subtilis str. 168 BSU16090 -51 4.8 ATGAAAGCGCAGTCTA
Geobacillus kaustophilus HTA426 GK1208 -47 4.2 ATGAAAGCGCTAAGAC
Position: -203
Score: 5.1
Sequence: ATGTAAGCGCATTCAA
Locus tag: B14911_06111
B14911_06111 -203 5.1 ATGTAAGCGCATTCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: dat
Ortholog function: Branched-chain amino acid aminotransferase (EC 2.6.1.42)
Anoxybacillus flavithermus WK1 Aflv_0590 -170 4.8 ATGTAAGCGGATACAT
Bacillus cereus ATCC 14579 BC1396 -153 5 TTGTAAACGTTAACAA
Bacillus licheniformis DSM 13 BLi02962 -225 5 ATGTAAGCGTATACAA
Bacillus pumilus SAFR-032 BPUM_2473 -200 4.6 GTGTAAGCGTATACAT
Geobacillus kaustophilus HTA426 GK2662 -165 5.1 ATGTAAGCGCATTCAA
Position: -33
Score: 4.7
Sequence: TTGAAAACGTGTACAT
Locus tag: B14911_08617
B14911_08617 -33 4.7 TTGAAAACGTGTACAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: drm
Ortholog function: Phosphopentomutase (EC 5.4.2.7)
Anoxybacillus flavithermus WK1 Aflv_0998 -114 4.9 ATGAAAACGTTTTATA
Bacillus amyloliquefaciens FZB42 RBAM_021610 -74 4.5 ATGTAAACGGTTTATA
Bacillus cereus ATCC 14579 BC4087 -222 4.5 AAGAAAGCGTAAACAT
Bacillus licheniformis DSM 13 BLi02500 -99 4.1 GTGTAAACGGTTTATA
Bacillus pumilus SAFR-032 BPUM_2081 -82 4.5 TTGTAAACGGTTTATA
Bacillus subtilis subsp. subtilis str. 168 BSU23500 -77 4.7 ATGAAAACGGTTTATA
Position: -266
Score: 5.3
Sequence: TTGAAAACGCTTTCTA
Position: -109
Score: 4.3
Sequence: TGGAAAGCGCCTTCAA
Locus tag: B14911_11412
B14911_11412 -266 5.3 TTGAAAACGCTTTCTA
-109 4.3 TGGAAAGCGCCTTCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ylbP
Ortholog function: Uncharacterized N-acetyltransferase (EC 2.3.1.-)
Bacillus amyloliquefaciens FZB42 RBAM_014960 -46 4.9 ATTAAAGCGTTTACAA
Bacillus clausii KSM-K16 ABC2369 -70 4.2 TTTAATGCGTTTTCAT
Bacillus licheniformis DSM 13 BLi01727 -48 4.5 AAAAAAGCGTTTACAA
Bacillus pumilus SAFR-032 BPUM_1403 -58 4.8 ATGAAAACGCCTTCAA
Bacillus subtilis subsp. subtilis str. 168 BSU15100 -48 4.4 AATAAAGCGTTTACAA
Oceanobacillus iheyensis HTE831 OB1458 -59 4.3 TAGGAAGCGTTATCTT
Position: -58
Score: 5.1
Sequence: TAGAAAGCGTTTTCAA
Locus tag: B14911_11417
B14911_11417 -58 5.1 TAGAAAGCGTTTTCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: yngH
Ortholog function: Biotin carboxylase of methylcrotonyl-CoA carboxylase (EC 6.3.4.14)
Bacillus amyloliquefaciens FZB42 RBAM_018370 -44 5.2 ATGAAAACGTTTACTA
Bacillus clausii KSM-K16 ABC1507 -77 4.6 TTGGTAACGCTTTCAT
Bacillus halodurans C-125 BH1132 -251 4.6 AAGAAACCGTTTACAA
Bacillus licheniformis DSM 13 BLi02143 -35 5.3 ATGAAAACGCTTTCTA
Bacillus pumilus SAFR-032 BPUM_1784 -35 4.8 ATGTAAACGCTTACCA
Bacillus subtilis subsp. subtilis str. 168 BSU18240 -41 4.8 ATGTAAACGCTTTCCT
Position: -186
Score: 4.5
Sequence: GTAAAAGCGCTTCCAA
Locus tag: B14911_23800
B14911_23800 -186 4.5 GTAAAAGCGCTTCCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: acsA
Ortholog function: Acetyl-coenzyme A synthetase (EC 6.2.1.1)
Anoxybacillus flavithermus WK1 Aflv_0462 237 4.9 ATGAAAGAGTTTTCAA
Bacillus amyloliquefaciens FZB42 RBAM_026800 -102 4.5 TATAAAGCGTTTTCAA
Bacillus clausii KSM-K16 ABC2760 -65 4.7 TTGAAAACGTTACCTT
0 4.8 ATGAAAGCGCTTCCTG
Bacillus halodurans C-125 BH3234 6 4.4 TTGCAAGCGCTTCCAG
Bacillus licheniformis DSM 13 BLi03119 6 4.7 TTGAAAGCGCTGCCAG
Bacillus pumilus SAFR-032 BPUM_2616 -30 4.7 TTGTAAACGTATGCAA
Bacillus subtilis subsp. subtilis str. 168 BSU29680 -101 4.5 TATAAAGCGTTTTCAA
6 4.8 TTGAAAGCGTTACCAG
Oceanobacillus iheyensis HTE831 OB0022 -36 4.5 TTGTAATCGTTTGCAA
Paenibacillus sp. JDR-2 Pjdr2_3796 -56 5 TTGAAAGCGTATTCTT
Position: -35
Score: 5.2
Sequence: ATGAAAGCGTATACAA
Locus tag: B14911_05606
B14911_05606 -35 5.2 ATGAAAGCGTATACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: yngJ
Ortholog function: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10)
Bacillus clausii KSM-K16 ABC1506 -77 4.6 TTGGTAACGCTTTCAT
Bacillus halodurans C-125 BH1130 -105 4.7 TTGGTAGCGCTTACAT
Geobacillus kaustophilus HTA426 GK1597 -103 4.9 TTGAAAACGCTTCAAA
Position: -32
Score: 4.5
Sequence: GTGAAAGCGATAACAA
Locus tag: B14911_15580
B14911_15580 -32 4.5 GTGAAAGCGATAACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: lutA
Ortholog function: Predicted L-lactate dehydrogenase, Fe-S oxidoreductase subunit
Anoxybacillus flavithermus WK1 Aflv_2009 -30 4.7 AAGAAAACGTTTTCTT
Bacillus amyloliquefaciens FZB42 RBAM_031470 -181 4.7 ATGTAAGCGATTACTT
Bacillus cereus ATCC 14579 BC1303 -122 4.7 AAGTAAGCGTTTTCTT
Bacillus clausii KSM-K16 ABC0975 -69 4.8 TTGTAAGTGCTTACAT
Bacillus halodurans C-125 BH1832 -70 4.8 TTTAAAACGCTTACAT
Geobacillus kaustophilus HTA426 GK0395 -343 4.8 ATAAAAGCGTTTTCAG
Oceanobacillus iheyensis HTE831 OB0370 -36 4.1 ATGAAATCGCTTCATT