Propagation of MalR regulog to Bacillus megaterium DSM319
| Source regulog: | MalR - Bacillales |
| Regulator type: | Transcription factor |
| Regulator family: | CitB |
| Regulation mode: | activator |
| Biological process: | Malate utilization |
| Effector: | MalK, sensor histidine kinase (malate) |
| Phylum: | Firmicutes |
| Propagated regulon: | |
| Target genome | Bacillus megaterium DSM319 |
| Orthologous TF(s) | No orthologous TFs found |
| Regulated genes | 7 |
| Locus tag | Position | Score | Sequence | |
|---|---|---|---|---|
|
Position: -348
Score: 5.1 Sequence: TTTTTATAATT-(8)-TTTCCATATTA
Position: -337
Score: 6.1 Sequence: AAACATTTTTT-(13)-TTATTTTGACT
Position: -336
Score: 5.7 Sequence: AACATTTTTTC-(12)-TTATTTTGACT
Position: -332
Score: 5.3 Sequence: TTTTTTCCATA-(8)-TTATTTTGACT
Position: -329
Score: 5.5 Sequence: TTTCCATATTA-(11)-TGACTTTTAAA
Position: -321
Score: 5.4 Sequence: TTAAAGGATTA-(3)-TGACTTTTAAA
Position: -313
Score: 5.6 Sequence: TTATTTTGACT-(12)-TGAATAGAATA
Position: -307
Score: 5.6 Sequence: TGACTTTTAAA-(6)-TGAATAGAATA
Position: -266
Score: 5.1 Sequence: GTACCTATATA-(4)-GAAAATTTATA
Position: -251
Score: 5.1 Sequence: GAAAATTTATA-(7)-TTAAATTCAGA
Position: -155
Score: 5.1 Sequence: TAAAATATACT-(4)-TCAAATGAATT
Position: -88
Score: 5.6 Sequence: TGAGTAATATT-(11)-TTAATTACTTA
Position: -85
Score: 6.3 Sequence: GTAATATTCAT-(12)-TTACTTAAATC
Position: -84
Score: 6 Sequence: TAATATTCATA-(11)-TTACTTAAATC
Position: -79
Score: 6 Sequence: TTCATATAAGG-(6)-TTACTTAAATC
Position: -66
Score: 5.5 Sequence: TTAATTACTTA-(8)-CAACTTGTATG
Position: -62
Score: 6.3 Sequence: TTACTTAAATC-(4)-CAACTTGTATG
Locus tag: BMD_2014
|
||||
| BMD_2014 | -348 | 5.1 | TTTTTATAATT-(8)-TTTCCATATTA | |
| -337 | 6.1 | AAACATTTTTT-(13)-TTATTTTGACT | ||
| -336 | 5.7 | AACATTTTTTC-(12)-TTATTTTGACT | ||
| -332 | 5.3 | TTTTTTCCATA-(8)-TTATTTTGACT | ||
| -329 | 5.5 | TTTCCATATTA-(11)-TGACTTTTAAA | ||
| -321 | 5.4 | TTAAAGGATTA-(3)-TGACTTTTAAA | ||
| -313 | 5.6 | TTATTTTGACT-(12)-TGAATAGAATA | ||
| -307 | 5.6 | TGACTTTTAAA-(6)-TGAATAGAATA | ||
| -266 | 5.1 | GTACCTATATA-(4)-GAAAATTTATA | ||
| -251 | 5.1 | GAAAATTTATA-(7)-TTAAATTCAGA | ||
| -155 | 5.1 | TAAAATATACT-(4)-TCAAATGAATT | ||
| -88 | 5.6 | TGAGTAATATT-(11)-TTAATTACTTA | ||
| -85 | 6.3 | GTAATATTCAT-(12)-TTACTTAAATC | ||
| -84 | 6 | TAATATTCATA-(11)-TTACTTAAATC | ||
| -79 | 6 | TTCATATAAGG-(6)-TTACTTAAATC | ||
| -66 | 5.5 | TTAATTACTTA-(8)-CAACTTGTATG | ||
| -62 | 6.3 | TTACTTAAATC-(4)-CAACTTGTATG | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ywkA | ||||
| Ortholog function: NAD-dependent malate dehydrogenase (EC 1.1.1.38) | ||||
| Bacillus amyloliquefaciens FZB42 | RBAM_034210 | -206 | -0.8 | AACTTAAAAAA-(10)-AAATTAAGTAA |
| Bacillus licheniformis DSM 13 | BLi03953 | -242 | -0.8 | AACTTAATTAA-(10)-AAATTAACTAA |
| Bacillus pumilus SAFR-032 | BPUM_3348 | -209 | 0.5 | AAATTAAATAA-(10)-AAATTATCTAA |
| Bacillus subtilis subsp. subtilis str. 168 | BSU37050 | -156 | -1 | AATTTAAATAA-(10)-AAATTAAGTAA |
|
Position: 10
Score: 5.1 Sequence: GTCAAATTTTT-(13)-CTATCTTTTTT
Position: 11
Score: 6.2 Sequence: TCAAATTTTTC-(12)-CTATCTTTTTT
Position: 12
Score: 5.8 Sequence: CAAATTTTTCT-(11)-CTATCTTTTTT
Position: 13
Score: 5.2 Sequence: AAATTTTTCTC-(10)-CTATCTTTTTT
Position: 16
Score: 5.5 Sequence: TTTTTCTCATT-(7)-CTATCTTTTTT
Position: 18
Score: 5.1 Sequence: TTTCTCATTCT-(5)-CTATCTTTTTT
Locus tag: BMD_2619
|
||||
| BMD_2619 | 10 | 5.1 | GTCAAATTTTT-(13)-CTATCTTTTTT | |
| 11 | 6.2 | TCAAATTTTTC-(12)-CTATCTTTTTT | ||
| 12 | 5.8 | CAAATTTTTCT-(11)-CTATCTTTTTT | ||
| 13 | 5.2 | AAATTTTTCTC-(10)-CTATCTTTTTT | ||
| 16 | 5.5 | TTTTTCTCATT-(7)-CTATCTTTTTT | ||
| 18 | 5.1 | TTTCTCATTCT-(5)-CTATCTTTTTT | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ywkB | ||||
| Ortholog function: Malate permease | ||||
| Bacillus amyloliquefaciens FZB42 | RBAM_034200 | -206 | -0.8 | AACTTAAAAAA-(10)-AAATTAAGTAA |
| Bacillus licheniformis DSM 13 | BLi03952 | -242 | -0.8 | AACTTAATTAA-(10)-AAATTAACTAA |
| Bacillus pumilus SAFR-032 | BPUM_3347 | -209 | 0.5 | AAATTAAATAA-(10)-AAATTATCTAA |
|
Position: -172
Score: 5.2 Sequence: TTATTGTTAGG-(12)-TCTCATTTATC
Position: -114
Score: 6.1 Sequence: TTGATGTAGTT-(13)-TTTTTTGTTTT
Position: -98
Score: 5.2 Sequence: TCAATCTCTTT-(5)-TTTCATTAAAA
Position: -94
Score: 5.2 Sequence: TCTCTTTTTTG-(2)-TTCATTAAAAA
Position: -87
Score: 5.1 Sequence: TTTGTTTTCAT-(13)-TTAAAAATATA
Position: -86
Score: 5.8 Sequence: TTGTTTTCATT-(12)-TTAAAAATATA
Locus tag: BMD_2620
|
||||
| BMD_2620 | -172 | 5.2 | TTATTGTTAGG-(12)-TCTCATTTATC | |
| -114 | 6.1 | TTGATGTAGTT-(13)-TTTTTTGTTTT | ||
| -98 | 5.2 | TCAATCTCTTT-(5)-TTTCATTAAAA | ||
| -94 | 5.2 | TCTCTTTTTTG-(2)-TTCATTAAAAA | ||
| -87 | 5.1 | TTTGTTTTCAT-(13)-TTAAAAATATA | ||
| -86 | 5.8 | TTGTTTTCATT-(12)-TTAAAAATATA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ywkA | ||||
| Ortholog function: NAD-dependent malate dehydrogenase (EC 1.1.1.38) | ||||
| Bacillus amyloliquefaciens FZB42 | RBAM_034210 | -206 | -0.8 | AACTTAAAAAA-(10)-AAATTAAGTAA |
| Bacillus licheniformis DSM 13 | BLi03953 | -242 | -0.8 | AACTTAATTAA-(10)-AAATTAACTAA |
| Bacillus pumilus SAFR-032 | BPUM_3348 | -209 | 0.5 | AAATTAAATAA-(10)-AAATTATCTAA |
| Bacillus subtilis subsp. subtilis str. 168 | BSU37050 | -156 | -1 | AATTTAAATAA-(10)-AAATTAAGTAA |
|
Position: -350
Score: 5.4 Sequence: CATCTTTCATT-(5)-GTGTTTTTTTT
Position: -334
Score: 5.3 Sequence: GTGTTTTTTTT-(4)-TTAAGTAAGCT
Position: -290
Score: 5.9 Sequence: CAAATTTTTGC-(13)-TTACTGTATTG
Position: -289
Score: 5.4 Sequence: AAATTTTTGCT-(12)-TTACTGTATTG
Position: -280
Score: 5.5 Sequence: CTAAGGTTGTA-(3)-TTACTGTATTG
Position: -266
Score: 5.9 Sequence: TTACTGTATTG-(10)-TTTGTGTGATT
Position: -245
Score: 5.4 Sequence: TTTGTGTGATT-(5)-TTAAATAAATG
Position: -67
Score: 5.7 Sequence: ATAATTATCTT-(10)-CAAATTTATAT
Position: -66
Score: 5.4 Sequence: TAATTATCTTT-(13)-TTTATATGATT
Position: -64
Score: 5.2 Sequence: ATTATCTTTCT-(11)-TTTATATGATT
Position: -63
Score: 5.9 Sequence: TTATCTTTCTA-(10)-TTTATATGATT
Position: -47
Score: 5.6 Sequence: GCAAATTTATA-(3)-TTGATTCTAAT
Position: -46
Score: 5.6 Sequence: CAAATTTATAT-(2)-TTGATTCTAAT
Position: -42
Score: 5.5 Sequence: TTTATATGATT-(4)-CTAATCTAAAC
Position: 7
Score: 5.9 Sequence: TTAGTCAAATC-(4)-TTATTTTAACC
Position: 11
Score: 5.2 Sequence: TCAAATCTTTA-(11)-CCAATCTTTTT
Position: 13
Score: 5.3 Sequence: AAATCTTTATT-(9)-CCAATCTTTTT
Position: 16
Score: 5.6 Sequence: TCTTTATTATT-(13)-TTTTTGTTATT
Position: 17
Score: 5.2 Sequence: CTTTATTATTT-(12)-TTTTTGTTATT
Position: 18
Score: 6.7 Sequence: TTTATTATTTT-(11)-TTTTTGTTATT
Position: 19
Score: 6.4 Sequence: TTATTATTTTA-(10)-TTTTTGTTATT
Position: 21
Score: 5.8 Sequence: ATTATTTTAAC-(8)-TTTTTGTTATT
Position: 22
Score: 6.5 Sequence: TTATTTTAACC-(7)-TTTTTGTTATT
Locus tag: BMD_2629
|
||||
| BMD_2629 | -350 | 5.4 | CATCTTTCATT-(5)-GTGTTTTTTTT | |
| -334 | 5.3 | GTGTTTTTTTT-(4)-TTAAGTAAGCT | ||
| -290 | 5.9 | CAAATTTTTGC-(13)-TTACTGTATTG | ||
| -289 | 5.4 | AAATTTTTGCT-(12)-TTACTGTATTG | ||
| -280 | 5.5 | CTAAGGTTGTA-(3)-TTACTGTATTG | ||
| -266 | 5.9 | TTACTGTATTG-(10)-TTTGTGTGATT | ||
| -245 | 5.4 | TTTGTGTGATT-(5)-TTAAATAAATG | ||
| -67 | 5.7 | ATAATTATCTT-(10)-CAAATTTATAT | ||
| -66 | 5.4 | TAATTATCTTT-(13)-TTTATATGATT | ||
| -64 | 5.2 | ATTATCTTTCT-(11)-TTTATATGATT | ||
| -63 | 5.9 | TTATCTTTCTA-(10)-TTTATATGATT | ||
| -47 | 5.6 | GCAAATTTATA-(3)-TTGATTCTAAT | ||
| -46 | 5.6 | CAAATTTATAT-(2)-TTGATTCTAAT | ||
| -42 | 5.5 | TTTATATGATT-(4)-CTAATCTAAAC | ||
| 7 | 5.9 | TTAGTCAAATC-(4)-TTATTTTAACC | ||
| 11 | 5.2 | TCAAATCTTTA-(11)-CCAATCTTTTT | ||
| 13 | 5.3 | AAATCTTTATT-(9)-CCAATCTTTTT | ||
| 16 | 5.6 | TCTTTATTATT-(13)-TTTTTGTTATT | ||
| 17 | 5.2 | CTTTATTATTT-(12)-TTTTTGTTATT | ||
| 18 | 6.7 | TTTATTATTTT-(11)-TTTTTGTTATT | ||
| 19 | 6.4 | TTATTATTTTA-(10)-TTTTTGTTATT | ||
| 21 | 5.8 | ATTATTTTAAC-(8)-TTTTTGTTATT | ||
| 22 | 6.5 | TTATTTTAACC-(7)-TTTTTGTTATT | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ywkB | ||||
| Ortholog function: Malate permease | ||||
| Bacillus amyloliquefaciens FZB42 | RBAM_034200 | -206 | -0.8 | AACTTAAAAAA-(10)-AAATTAAGTAA |
| Bacillus licheniformis DSM 13 | BLi03952 | -242 | -0.8 | AACTTAATTAA-(10)-AAATTAACTAA |
| Bacillus pumilus SAFR-032 | BPUM_3347 | -209 | 0.5 | AAATTAAATAA-(10)-AAATTATCTAA |
|
Position: -270
Score: 5.4 Sequence: TTAGTTTGCTG-(13)-TAAAACTAATT
Position: -246
Score: 5.4 Sequence: TAAAACTAATT-(9)-ATAACTATGTT
Position: -241
Score: 6.1 Sequence: CTAATTTTTCT-(4)-ATAACTATGTT
Position: -240
Score: 5.8 Sequence: TAATTTTTCTT-(3)-ATAACTATGTT
Position: -42
Score: 5.7 Sequence: TTGGTTTTTTA-(2)-TTCTTTTAAGA
Locus tag: BMD_3745
|
||||
| BMD_3745 | -270 | 5.4 | TTAGTTTGCTG-(13)-TAAAACTAATT | |
| -246 | 5.4 | TAAAACTAATT-(9)-ATAACTATGTT | ||
| -241 | 6.1 | CTAATTTTTCT-(4)-ATAACTATGTT | ||
| -240 | 5.8 | TAATTTTTCTT-(3)-ATAACTATGTT | ||
| -42 | 5.7 | TTGGTTTTTTA-(2)-TTCTTTTAAGA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ywkA | ||||
| Ortholog function: NAD-dependent malate dehydrogenase (EC 1.1.1.38) | ||||
| Bacillus amyloliquefaciens FZB42 | RBAM_034210 | -206 | -0.8 | AACTTAAAAAA-(10)-AAATTAAGTAA |
| Bacillus licheniformis DSM 13 | BLi03953 | -242 | -0.8 | AACTTAATTAA-(10)-AAATTAACTAA |
| Bacillus pumilus SAFR-032 | BPUM_3348 | -209 | 0.5 | AAATTAAATAA-(10)-AAATTATCTAA |
| Bacillus subtilis subsp. subtilis str. 168 | BSU37050 | -156 | -1 | AATTTAAATAA-(10)-AAATTAAGTAA |
|
Position: -255
Score: 5.3 Sequence: TGCAGTTTAGT-(5)-TTAATAAAATA
Position: -254
Score: 5.6 Sequence: GCAGTTTAGTT-(4)-TTAATAAAATA
Position: -184
Score: 5.3 Sequence: TAAATATTGTC-(10)-ATAAAATAATA
Position: -107
Score: 6.5 Sequence: TGAAACGTATT-(7)-TTATTTTATTT
Position: -105
Score: 6.4 Sequence: AAACGTATTTT-(5)-TTATTTTATTT
Position: -101
Score: 6.4 Sequence: GTATTTTTACA-(6)-TTATTTTAAAT
Position: -98
Score: 5.9 Sequence: TTTTTACAATT-(3)-TTATTTTAAAT
Locus tag: BMD_5230
|
||||
| BMD_5230 | -255 | 5.3 | TGCAGTTTAGT-(5)-TTAATAAAATA | |
| -254 | 5.6 | GCAGTTTAGTT-(4)-TTAATAAAATA | ||
| -184 | 5.3 | TAAATATTGTC-(10)-ATAAAATAATA | ||
| -107 | 6.5 | TGAAACGTATT-(7)-TTATTTTATTT | ||
| -105 | 6.4 | AAACGTATTTT-(5)-TTATTTTATTT | ||
| -101 | 6.4 | GTATTTTTACA-(6)-TTATTTTAAAT | ||
| -98 | 5.9 | TTTTTACAATT-(3)-TTATTTTAAAT | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: yflS | ||||
| Ortholog function: Putative malate transporter | ||||
| Bacillus amyloliquefaciens FZB42 | RBAM_007730 | -89 | 5.2 | TTTTTTAATTA-(9)-TTTATTAACTT |
| Bacillus halodurans C-125 | BH3327 | -63 | 7.4 | TTGCTCTTTTA-(6)-CTACTTTTTTT |
| -46 | 7.7 | CTACTTTTTTT-(6)-TTAGGTTAATC | ||
| Bacillus subtilis subsp. subtilis str. 168 | BSU07570 | -91 | 5.2 | TTTTTTAATTA-(9)-TTTATTAACTT |