Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of MalR regulog to Bacillus megaterium DSM319

Reference regulog properties
Source regulog: MalR - Bacillales
Regulator type: Transcription factor
Regulator family: CitB
Regulation mode: activator
Biological process: Malate utilization
Effector: MalK, sensor histidine kinase (malate)
Phylum: Firmicutes
Propagated regulon:
Target genome Bacillus megaterium DSM319
Orthologous TF(s) No orthologous TFs found
Regulated genes 7
Built upon 11 sites [see more]
Predicted regulatory interactions in Bacillus megaterium DSM319
Locus tag Position Score Sequence
Position: -348
Score: 5.1
Sequence: TTTTTATAATT-(8)-TTTCCATATTA
Position: -337
Score: 6.1
Sequence: AAACATTTTTT-(13)-TTATTTTGACT
Position: -336
Score: 5.7
Sequence: AACATTTTTTC-(12)-TTATTTTGACT
Position: -332
Score: 5.3
Sequence: TTTTTTCCATA-(8)-TTATTTTGACT
Position: -329
Score: 5.5
Sequence: TTTCCATATTA-(11)-TGACTTTTAAA
Position: -321
Score: 5.4
Sequence: TTAAAGGATTA-(3)-TGACTTTTAAA
Position: -313
Score: 5.6
Sequence: TTATTTTGACT-(12)-TGAATAGAATA
Position: -307
Score: 5.6
Sequence: TGACTTTTAAA-(6)-TGAATAGAATA
Position: -266
Score: 5.1
Sequence: GTACCTATATA-(4)-GAAAATTTATA
Position: -251
Score: 5.1
Sequence: GAAAATTTATA-(7)-TTAAATTCAGA
Position: -155
Score: 5.1
Sequence: TAAAATATACT-(4)-TCAAATGAATT
Position: -88
Score: 5.6
Sequence: TGAGTAATATT-(11)-TTAATTACTTA
Position: -85
Score: 6.3
Sequence: GTAATATTCAT-(12)-TTACTTAAATC
Position: -84
Score: 6
Sequence: TAATATTCATA-(11)-TTACTTAAATC
Position: -79
Score: 6
Sequence: TTCATATAAGG-(6)-TTACTTAAATC
Position: -66
Score: 5.5
Sequence: TTAATTACTTA-(8)-CAACTTGTATG
Position: -62
Score: 6.3
Sequence: TTACTTAAATC-(4)-CAACTTGTATG
Locus tag: BMD_2014
BMD_2014 -348 5.1 TTTTTATAATT-(8)-TTTCCATATTA
-337 6.1 AAACATTTTTT-(13)-TTATTTTGACT
-336 5.7 AACATTTTTTC-(12)-TTATTTTGACT
-332 5.3 TTTTTTCCATA-(8)-TTATTTTGACT
-329 5.5 TTTCCATATTA-(11)-TGACTTTTAAA
-321 5.4 TTAAAGGATTA-(3)-TGACTTTTAAA
-313 5.6 TTATTTTGACT-(12)-TGAATAGAATA
-307 5.6 TGACTTTTAAA-(6)-TGAATAGAATA
-266 5.1 GTACCTATATA-(4)-GAAAATTTATA
-251 5.1 GAAAATTTATA-(7)-TTAAATTCAGA
-155 5.1 TAAAATATACT-(4)-TCAAATGAATT
-88 5.6 TGAGTAATATT-(11)-TTAATTACTTA
-85 6.3 GTAATATTCAT-(12)-TTACTTAAATC
-84 6 TAATATTCATA-(11)-TTACTTAAATC
-79 6 TTCATATAAGG-(6)-TTACTTAAATC
-66 5.5 TTAATTACTTA-(8)-CAACTTGTATG
-62 6.3 TTACTTAAATC-(4)-CAACTTGTATG
Supported by regulated orthologs from reference regulons
Ortholog gene name: ywkA
Ortholog function: NAD-dependent malate dehydrogenase (EC 1.1.1.38)
Bacillus amyloliquefaciens FZB42 RBAM_034210 -206 -0.8 AACTTAAAAAA-(10)-AAATTAAGTAA
Bacillus licheniformis DSM 13 BLi03953 -242 -0.8 AACTTAATTAA-(10)-AAATTAACTAA
Bacillus pumilus SAFR-032 BPUM_3348 -209 0.5 AAATTAAATAA-(10)-AAATTATCTAA
Bacillus subtilis subsp. subtilis str. 168 BSU37050 -156 -1 AATTTAAATAA-(10)-AAATTAAGTAA
Position: 10
Score: 5.1
Sequence: GTCAAATTTTT-(13)-CTATCTTTTTT
Position: 11
Score: 6.2
Sequence: TCAAATTTTTC-(12)-CTATCTTTTTT
Position: 12
Score: 5.8
Sequence: CAAATTTTTCT-(11)-CTATCTTTTTT
Position: 13
Score: 5.2
Sequence: AAATTTTTCTC-(10)-CTATCTTTTTT
Position: 16
Score: 5.5
Sequence: TTTTTCTCATT-(7)-CTATCTTTTTT
Position: 18
Score: 5.1
Sequence: TTTCTCATTCT-(5)-CTATCTTTTTT
Locus tag: BMD_2619
BMD_2619 10 5.1 GTCAAATTTTT-(13)-CTATCTTTTTT
11 6.2 TCAAATTTTTC-(12)-CTATCTTTTTT
12 5.8 CAAATTTTTCT-(11)-CTATCTTTTTT
13 5.2 AAATTTTTCTC-(10)-CTATCTTTTTT
16 5.5 TTTTTCTCATT-(7)-CTATCTTTTTT
18 5.1 TTTCTCATTCT-(5)-CTATCTTTTTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ywkB
Ortholog function: Malate permease
Bacillus amyloliquefaciens FZB42 RBAM_034200 -206 -0.8 AACTTAAAAAA-(10)-AAATTAAGTAA
Bacillus licheniformis DSM 13 BLi03952 -242 -0.8 AACTTAATTAA-(10)-AAATTAACTAA
Bacillus pumilus SAFR-032 BPUM_3347 -209 0.5 AAATTAAATAA-(10)-AAATTATCTAA
Position: -172
Score: 5.2
Sequence: TTATTGTTAGG-(12)-TCTCATTTATC
Position: -114
Score: 6.1
Sequence: TTGATGTAGTT-(13)-TTTTTTGTTTT
Position: -98
Score: 5.2
Sequence: TCAATCTCTTT-(5)-TTTCATTAAAA
Position: -94
Score: 5.2
Sequence: TCTCTTTTTTG-(2)-TTCATTAAAAA
Position: -87
Score: 5.1
Sequence: TTTGTTTTCAT-(13)-TTAAAAATATA
Position: -86
Score: 5.8
Sequence: TTGTTTTCATT-(12)-TTAAAAATATA
Locus tag: BMD_2620
BMD_2620 -172 5.2 TTATTGTTAGG-(12)-TCTCATTTATC
-114 6.1 TTGATGTAGTT-(13)-TTTTTTGTTTT
-98 5.2 TCAATCTCTTT-(5)-TTTCATTAAAA
-94 5.2 TCTCTTTTTTG-(2)-TTCATTAAAAA
-87 5.1 TTTGTTTTCAT-(13)-TTAAAAATATA
-86 5.8 TTGTTTTCATT-(12)-TTAAAAATATA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ywkA
Ortholog function: NAD-dependent malate dehydrogenase (EC 1.1.1.38)
Bacillus amyloliquefaciens FZB42 RBAM_034210 -206 -0.8 AACTTAAAAAA-(10)-AAATTAAGTAA
Bacillus licheniformis DSM 13 BLi03953 -242 -0.8 AACTTAATTAA-(10)-AAATTAACTAA
Bacillus pumilus SAFR-032 BPUM_3348 -209 0.5 AAATTAAATAA-(10)-AAATTATCTAA
Bacillus subtilis subsp. subtilis str. 168 BSU37050 -156 -1 AATTTAAATAA-(10)-AAATTAAGTAA
Position: -350
Score: 5.4
Sequence: CATCTTTCATT-(5)-GTGTTTTTTTT
Position: -334
Score: 5.3
Sequence: GTGTTTTTTTT-(4)-TTAAGTAAGCT
Position: -290
Score: 5.9
Sequence: CAAATTTTTGC-(13)-TTACTGTATTG
Position: -289
Score: 5.4
Sequence: AAATTTTTGCT-(12)-TTACTGTATTG
Position: -280
Score: 5.5
Sequence: CTAAGGTTGTA-(3)-TTACTGTATTG
Position: -266
Score: 5.9
Sequence: TTACTGTATTG-(10)-TTTGTGTGATT
Position: -245
Score: 5.4
Sequence: TTTGTGTGATT-(5)-TTAAATAAATG
Position: -67
Score: 5.7
Sequence: ATAATTATCTT-(10)-CAAATTTATAT
Position: -66
Score: 5.4
Sequence: TAATTATCTTT-(13)-TTTATATGATT
Position: -64
Score: 5.2
Sequence: ATTATCTTTCT-(11)-TTTATATGATT
Position: -63
Score: 5.9
Sequence: TTATCTTTCTA-(10)-TTTATATGATT
Position: -47
Score: 5.6
Sequence: GCAAATTTATA-(3)-TTGATTCTAAT
Position: -46
Score: 5.6
Sequence: CAAATTTATAT-(2)-TTGATTCTAAT
Position: -42
Score: 5.5
Sequence: TTTATATGATT-(4)-CTAATCTAAAC
Position: 7
Score: 5.9
Sequence: TTAGTCAAATC-(4)-TTATTTTAACC
Position: 11
Score: 5.2
Sequence: TCAAATCTTTA-(11)-CCAATCTTTTT
Position: 13
Score: 5.3
Sequence: AAATCTTTATT-(9)-CCAATCTTTTT
Position: 16
Score: 5.6
Sequence: TCTTTATTATT-(13)-TTTTTGTTATT
Position: 17
Score: 5.2
Sequence: CTTTATTATTT-(12)-TTTTTGTTATT
Position: 18
Score: 6.7
Sequence: TTTATTATTTT-(11)-TTTTTGTTATT
Position: 19
Score: 6.4
Sequence: TTATTATTTTA-(10)-TTTTTGTTATT
Position: 21
Score: 5.8
Sequence: ATTATTTTAAC-(8)-TTTTTGTTATT
Position: 22
Score: 6.5
Sequence: TTATTTTAACC-(7)-TTTTTGTTATT
Locus tag: BMD_2629
BMD_2629 -350 5.4 CATCTTTCATT-(5)-GTGTTTTTTTT
-334 5.3 GTGTTTTTTTT-(4)-TTAAGTAAGCT
-290 5.9 CAAATTTTTGC-(13)-TTACTGTATTG
-289 5.4 AAATTTTTGCT-(12)-TTACTGTATTG
-280 5.5 CTAAGGTTGTA-(3)-TTACTGTATTG
-266 5.9 TTACTGTATTG-(10)-TTTGTGTGATT
-245 5.4 TTTGTGTGATT-(5)-TTAAATAAATG
-67 5.7 ATAATTATCTT-(10)-CAAATTTATAT
-66 5.4 TAATTATCTTT-(13)-TTTATATGATT
-64 5.2 ATTATCTTTCT-(11)-TTTATATGATT
-63 5.9 TTATCTTTCTA-(10)-TTTATATGATT
-47 5.6 GCAAATTTATA-(3)-TTGATTCTAAT
-46 5.6 CAAATTTATAT-(2)-TTGATTCTAAT
-42 5.5 TTTATATGATT-(4)-CTAATCTAAAC
7 5.9 TTAGTCAAATC-(4)-TTATTTTAACC
11 5.2 TCAAATCTTTA-(11)-CCAATCTTTTT
13 5.3 AAATCTTTATT-(9)-CCAATCTTTTT
16 5.6 TCTTTATTATT-(13)-TTTTTGTTATT
17 5.2 CTTTATTATTT-(12)-TTTTTGTTATT
18 6.7 TTTATTATTTT-(11)-TTTTTGTTATT
19 6.4 TTATTATTTTA-(10)-TTTTTGTTATT
21 5.8 ATTATTTTAAC-(8)-TTTTTGTTATT
22 6.5 TTATTTTAACC-(7)-TTTTTGTTATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ywkB
Ortholog function: Malate permease
Bacillus amyloliquefaciens FZB42 RBAM_034200 -206 -0.8 AACTTAAAAAA-(10)-AAATTAAGTAA
Bacillus licheniformis DSM 13 BLi03952 -242 -0.8 AACTTAATTAA-(10)-AAATTAACTAA
Bacillus pumilus SAFR-032 BPUM_3347 -209 0.5 AAATTAAATAA-(10)-AAATTATCTAA
Position: -270
Score: 5.4
Sequence: TTAGTTTGCTG-(13)-TAAAACTAATT
Position: -246
Score: 5.4
Sequence: TAAAACTAATT-(9)-ATAACTATGTT
Position: -241
Score: 6.1
Sequence: CTAATTTTTCT-(4)-ATAACTATGTT
Position: -240
Score: 5.8
Sequence: TAATTTTTCTT-(3)-ATAACTATGTT
Position: -42
Score: 5.7
Sequence: TTGGTTTTTTA-(2)-TTCTTTTAAGA
Locus tag: BMD_3745
BMD_3745 -270 5.4 TTAGTTTGCTG-(13)-TAAAACTAATT
-246 5.4 TAAAACTAATT-(9)-ATAACTATGTT
-241 6.1 CTAATTTTTCT-(4)-ATAACTATGTT
-240 5.8 TAATTTTTCTT-(3)-ATAACTATGTT
-42 5.7 TTGGTTTTTTA-(2)-TTCTTTTAAGA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ywkA
Ortholog function: NAD-dependent malate dehydrogenase (EC 1.1.1.38)
Bacillus amyloliquefaciens FZB42 RBAM_034210 -206 -0.8 AACTTAAAAAA-(10)-AAATTAAGTAA
Bacillus licheniformis DSM 13 BLi03953 -242 -0.8 AACTTAATTAA-(10)-AAATTAACTAA
Bacillus pumilus SAFR-032 BPUM_3348 -209 0.5 AAATTAAATAA-(10)-AAATTATCTAA
Bacillus subtilis subsp. subtilis str. 168 BSU37050 -156 -1 AATTTAAATAA-(10)-AAATTAAGTAA
Position: -255
Score: 5.3
Sequence: TGCAGTTTAGT-(5)-TTAATAAAATA
Position: -254
Score: 5.6
Sequence: GCAGTTTAGTT-(4)-TTAATAAAATA
Position: -184
Score: 5.3
Sequence: TAAATATTGTC-(10)-ATAAAATAATA
Position: -107
Score: 6.5
Sequence: TGAAACGTATT-(7)-TTATTTTATTT
Position: -105
Score: 6.4
Sequence: AAACGTATTTT-(5)-TTATTTTATTT
Position: -101
Score: 6.4
Sequence: GTATTTTTACA-(6)-TTATTTTAAAT
Position: -98
Score: 5.9
Sequence: TTTTTACAATT-(3)-TTATTTTAAAT
Locus tag: BMD_5230
BMD_5230 -255 5.3 TGCAGTTTAGT-(5)-TTAATAAAATA
-254 5.6 GCAGTTTAGTT-(4)-TTAATAAAATA
-184 5.3 TAAATATTGTC-(10)-ATAAAATAATA
-107 6.5 TGAAACGTATT-(7)-TTATTTTATTT
-105 6.4 AAACGTATTTT-(5)-TTATTTTATTT
-101 6.4 GTATTTTTACA-(6)-TTATTTTAAAT
-98 5.9 TTTTTACAATT-(3)-TTATTTTAAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: yflS
Ortholog function: Putative malate transporter
Bacillus amyloliquefaciens FZB42 RBAM_007730 -89 5.2 TTTTTTAATTA-(9)-TTTATTAACTT
Bacillus halodurans C-125 BH3327 -63 7.4 TTGCTCTTTTA-(6)-CTACTTTTTTT
-46 7.7 CTACTTTTTTT-(6)-TTAGGTTAATC
Bacillus subtilis subsp. subtilis str. 168 BSU07570 -91 5.2 TTTTTTAATTA-(9)-TTTATTAACTT
© 2009-2020 RegPrecise