Propagation of TnrA regulog to Bacillus megaterium DSM319
| Source regulog: | TnrA - Bacillales |
| Regulator type: | Transcription factor |
| Regulator family: | MerR |
| Regulation mode: | repressor (activator) |
| Biological process: | Nitrogen assimilation |
| Effector: | NrgB, ammonium uptake protein; NrgA, ammonium uptake protein; Feedback-inhibited GlnA, glutamine synthetase |
| Phylum: | Firmicutes |
| Propagated regulon: | |
| Target genome | Bacillus megaterium DSM319 |
| Orthologous TF(s) | BMD_1959 |
| Regulated genes | 53 |
| Locus tag | Position | Score | Sequence | |
|---|---|---|---|---|
|
Position: -161
Score: 3.4 Sequence: CTTTTGTTTTTCTAACA
Position: -67
Score: 3.3 Sequence: GAATATAATTTTTAACA
Position: -57
Score: 3.7 Sequence: TTTAACATATTTTAAAA
Position: 17
Score: 3.3 Sequence: AGTGAATAAATATTACG
Locus tag: BMD_0311
|
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| BMD_0311 | -161 | 3.4 | CTTTTGTTTTTCTAACA | |
| -67 | 3.3 | GAATATAATTTTTAACA | ||
| -57 | 3.7 | TTTAACATATTTTAAAA | ||
| 17 | 3.3 | AGTGAATAAATATTACG | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: glnQ | ||||
| Ortholog function: Glutamine transport ATP-binding protein GlnQ (TC 3.A.1.3.2) | ||||
| Bacillus subtilis subsp. subtilis str. 168 | BSU27430 | -28 | 4 | GGTCAAATTTTCTGATA |
| Bacillus amyloliquefaciens FZB42 | RBAM_024530 | -123 | 3.5 | TATCAGAAATTACGAAA |
| Bacillus pumilus SAFR-032 | BPUM_2382 | -93 | 3.8 | TGTTAAAAATGAATACA |
| Bacillus clausii KSM-K16 | ABC0770 | -8 | 3.4 | GGACAGCAATGATCACA |
| Paenibacillus sp. JDR-2 | Pjdr2_2874 | -63 | 4.7 | TGTTATCTAACCTAACA |
|
Position: -66
Score: 4.4 Sequence: TGTCATCTTATCTAATA
Locus tag: BMD_0416
|
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| BMD_0416 | -66 | 4.4 | TGTCATCTTATCTAATA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ygaF | ||||
| Ortholog function: Peroxiredoxin | ||||
| Paenibacillus sp. JDR-2 | Pjdr2_5899 | -34 | 3.6 | GGTTAGTAAACCTGACT |
|
Position: -100
Score: 5 Sequence: TGTTAGAAGTTATAACA
Locus tag: BMD_0778
|
||||
| BMD_0778 | -100 | 5 | TGTTAGAAGTTATAACA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: nasB | ||||
| Ortholog function: Nitrite reductase [NAD(P)H] large subunit (EC 1.7.1.4) | ||||
| Bacillus subtilis subsp. subtilis str. 168 | BSU03320 | -98 | 4.9 | TGTAAGTTTTTGTGACA |
| Bacillus amyloliquefaciens FZB42 | RBAM_003530 | -100 | 4.8 | TGTAAGATAATGCGACA |
| Bacillus licheniformis DSM 13 | BLi00482 | -87 | 5 | TGTCAGGAAATGTAACA |
| Bacillus clausii KSM-K16 | ABC1623 | -89 | 5.2 | TGTCACAAAATATTACA |
| Paenibacillus sp. JDR-2 | Pjdr2_2175 | -223 | 4 | TGTCAATAAACTTAACA |
| -159 | 4 | TGTGACCTATATTGACA | ||
|
Position: -324
Score: 5.1 Sequence: TGTTAGAACTTCTGACA
Locus tag: BMD_0948
|
||||
| BMD_0948 | -324 | 5.1 | TGTTAGAACTTCTGACA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: BH0746 | ||||
| Ortholog function: N-ethylammeline chlorohydrolase | ||||
| Bacillus halodurans C-125 | BH0746 | -245 | 4 | TGATAAGTTACCTTACA |
| Paenibacillus sp. JDR-2 | Pjdr2_3326 | -55 | 4.9 | TGTTATATAAAGTAACA |
|
Position: 4
Score: 3.7 Sequence: AGTTAGTAAATATAATA
Locus tag: BMD_1045
|
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| BMD_1045 | 4 | 3.7 | AGTTAGTAAATATAATA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: Pjdr2_5901 | ||||
| Ortholog function: Fumarylacetoacetate (FAA) hydrolase | ||||
| Paenibacillus sp. JDR-2 | Pjdr2_5901 | -34 | 3.6 | GGTTAGTAAACCTGACT |
|
Position: -127
Score: 5.3 Sequence: TGTTAGATAACCTAACA
Locus tag: BMD_1140
|
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| BMD_1140 | -127 | 5.3 | TGTTAGATAACCTAACA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: nasD | ||||
| Ortholog function: Nitrite reductase [NAD(P)H] large subunit (EC 1.7.1.4) | ||||
| Bacillus subtilis subsp. subtilis str. 168 | BSU03300 | -95 | 4.1 | TCGTATATTTTGTTACA |
| -85 | 5.3 | TGTTACATTTTATAACA | ||
| Bacillus amyloliquefaciens FZB42 | RBAM_003510 | -84 | 4.9 | TGTTACATTTCATAACA |
| Bacillus licheniformis DSM 13 | BLi00484 | -87 | 5 | TGTCAGGAAATGTAACA |
| Geobacillus kaustophilus HTA426 | GK1868 | -286 | 4.6 | TGTGATAAAAAGTTACA |
| -202 | 5.2 | TGTTATATAAACTGACA | ||
| Bacillus halodurans C-125 | BH0613 | -80 | 4.6 | TGTAAGATATCCTCCCA |
| Bacillus clausii KSM-K16 | ABC1621 | -89 | 5.2 | TGTCACAAAATATTACA |
|
Position: -131
Score: 4.8 Sequence: TGTCACTTTTTCTCACA
Position: -87
Score: 4.8 Sequence: TGTTAGAATGTATTACA
Locus tag: BMD_1959
|
||||
| BMD_1959 | -131 | 4.8 | TGTCACTTTTTCTCACA | |
| -87 | 4.8 | TGTTAGAATGTATTACA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: tnrA | ||||
| Ortholog function: Transcriptional regulator of nitrogen assimilation, MerR family | ||||
| Bacillus subtilis subsp. subtilis str. 168 | BSU13310 | -124 | 3.9 | TGTTAATTTTTCTTCCG |
| -81 | 5.5 | TGTTAGAAAATATGACA | ||
| Bacillus amyloliquefaciens FZB42 | RBAM_013130 | -124 | 4.1 | TGTCAATTTTTCTGCCG |
| -81 | 4.8 | CGTCAGAAAACCTGACA | ||
| Bacillus pumilus SAFR-032 | BPUM_1230 | -121 | 4 | TGTCAACTTTCCTTCCA |
| -80 | 5.5 | TGTTATATTTTCTAACA | ||
| Bacillus licheniformis DSM 13 | BLi01490 | -124 | 3.8 | TGTAAACTTTTCTTCCG |
| -81 | 5.6 | TGTTAGATTTTCTGACA | ||
| Anoxybacillus flavithermus WK1 | Aflv_1544 | -113 | 4.9 | TGTTACTTTTTATAACA |
| -82 | 4.9 | TGTTACTTTTTATAACA | ||
| -27 | 5.4 | TGTTATAAAATATGACA | ||
| Geobacillus kaustophilus HTA426 | GK1860 | -86 | 3.9 | TGTTAATTTTATTTACA |
| -33 | 4.6 | CGTTAGAAAATATAACG | ||
| Bacillus halodurans C-125 | BH1494 | -110 | 5.5 | TGTAAGAAAATCTAACA |
| Bacillus clausii KSM-K16 | ABC1760 | -99 | 5.5 | TGTTAGATTTTCTTACA |
| -57 | 5 | TGTGATATATTGTTACA | ||
| Oceanobacillus iheyensis HTE831 | OB1650 | -80 | 5.1 | TGTTAGAAATACTAACA |
| -57 | 4.3 | TGACATATAAGCTGACG | ||
| Paenibacillus sp. JDR-2 | Pjdr2_5154 | -302 | 5.7 | TGTTAGATAATCTAACA |
| -41 | 5 | TGTTAGAAAACATTACA | ||
|
Position: -227
Score: 4.8 Sequence: TGTAATACATTCTAACA
Position: -183
Score: 4.8 Sequence: TGTGAGAAAAAGTGACA
Locus tag: BMD_1960
|
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| BMD_1960 | -227 | 4.8 | TGTAATACATTCTAACA | |
| -183 | 4.8 | TGTGAGAAAAAGTGACA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ykzB | ||||
| Ortholog function: Hypothetical protein | ||||
| Bacillus subtilis subsp. subtilis str. 168 | BSU13320 | -130 | 5.5 | TGTCATATTTTCTAACA |
| -87 | 3.9 | CGGAAGAAAAATTAACA | ||
| Bacillus amyloliquefaciens FZB42 | RBAM_013140 | -130 | 4.8 | TGTCAGGTTTTCTGACG |
| -87 | 4.1 | CGGCAGAAAAATTGACA | ||
| Anoxybacillus flavithermus WK1 | Aflv_1546 | -172 | 5.4 | TGTCATATTTTATAACA |
| -117 | 4.9 | TGTTATAAAAAGTAACA | ||
| -86 | 4.9 | TGTTATAAAAAGTAACA | ||
| Geobacillus kaustophilus HTA426 | GK1862 | -176 | 4.6 | CGTTATATTTTCTAACG |
| -123 | 3.9 | TGTAAATAAAATTAACA | ||
|
Position: -119
Score: 4.4 Sequence: TGTCAGGTTTCTTTACA
Locus tag: BMD_2011
|
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| BMD_2011 | -119 | 4.4 | TGTCAGGTTTCTTTACA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: pucH | ||||
| Ortholog function: Allantoinase (EC 3.5.2.5) | ||||
| Bacillus subtilis subsp. subtilis str. 168 | BSU32410 | -51 | 5.1 | TGTTACATAAACTGACA |
| Bacillus amyloliquefaciens FZB42 | RBAM_029500 | -50 | 4.9 | TGTGATAAAAACTGACA |
| Bacillus halodurans C-125 | BH2309 | -260 | 4.5 | TGTCATAAAGCCTAACA |
| -71 | 4.2 | TATCAGAAAATATAAAA | ||
| Bacillus clausii KSM-K16 | ABC3732 | -173 | 4.2 | TGTAAACAATCCTAACA |
| Bacillus clausii KSM-K16 | ABC3732 | -173 | 4.2 | TGTAAACAATCCTAACA |
| Paenibacillus sp. JDR-2 | Pjdr2_3313 | -179 | 4.1 | TGTGATCTATTGTTACG |
| -96 | 4.3 | TGTAAGATATATTGACG | ||
|
Position: -190
Score: 5.3 Sequence: TGTCAAATATTCTGACA
Locus tag: BMD_2469
|
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| BMD_2469 | -190 | 5.3 | TGTCAAATATTCTGACA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: lamB | ||||
| Ortholog function: Lactam utilization protein LamB | ||||
| Bacillus subtilis subsp. subtilis str. 168 | BSU04050 | -145 | 4.9 | TGGTAGGTTTTCTGACA |
| -52 | 3.9 | CGGGACAATAAATGACA | ||
| Bacillus amyloliquefaciens FZB42 | RBAM_004280 | -137 | 4.9 | TGGTAGGTTTTCTGACA |
| Bacillus pumilus SAFR-032 | BPUM_0379 | -113 | 5.5 | TGTTATATTTTCTAACA |
| Bacillus licheniformis DSM 13 | BLi00498 | -155 | 4.6 | TGTGAGGTTTCCTAACA |
|
Position: -61
Score: 5.3 Sequence: TGTTAGAAAATATCACA
Locus tag: BMD_2991
|
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| BMD_2991 | -61 | 5.3 | TGTTAGAAAATATCACA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ureA | ||||
| Ortholog function: Urease gamma subunit (EC 3.5.1.5) | ||||
| Geobacillus kaustophilus HTA426 | GK1932 | -224 | 4.3 | TGATAATAAATATAACA |
| -201 | 5.2 | TGTAATAAAATGTGACA | ||
| Paenibacillus sp. JDR-2 | Pjdr2_4328 | -84 | 5.2 | TGTCATATTACCTAACA |
|
Position: -290
Score: 4.9 Sequence: TGTTAAAAATTCTCACA
Position: -134
Score: 4.6 Sequence: TGTTAGAAAAAGTGACG
Locus tag: BMD_3036
|
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| BMD_3036 | -290 | 4.9 | TGTTAAAAATTCTCACA | |
| -134 | 4.6 | TGTTAGAAAAAGTGACG | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: pucF | ||||
| Ortholog function: Allantoate amidohydrolase (EC 3.5.3.9) | ||||
| Bacillus licheniformis DSM 13 | BLi03435 | -43 | 4.6 | TGTAAAGAAATATAACA |
| Paenibacillus sp. JDR-2 | Pjdr2_3312 | -179 | 4.1 | TGTGATCTATTGTTACG |
| -96 | 4.3 | TGTAAGATATATTGACG | ||
|
Position: -43
Score: 4.8 Sequence: TGTCAGGTTTTTTTACA
Locus tag: BMD_3100
|
||||
| BMD_3100 | -43 | 4.8 | TGTCAGGTTTTTTTACA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: Pjdr2_5900 | ||||
| Ortholog function: Asparaginase/glutaminase | ||||
| Paenibacillus sp. JDR-2 | Pjdr2_5900 | -34 | 3.6 | GGTTAGTAAACCTGACT |
|
Position: -216
Score: 3.2 Sequence: ATTTATATATACTAAAA
Position: -126
Score: 3.3 Sequence: TCTAACCTATTATTAAA
Locus tag: BMD_3564
|
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| BMD_3564 | -216 | 3.2 | ATTTATATATACTAAAA | |
| -126 | 3.3 | TCTAACCTATTATTAAA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: yxkC | ||||
| Ortholog function: Hypothetical protein | ||||
| Bacillus subtilis subsp. subtilis str. 168 | BSU38850 | -117 | 3.6 | TGTAACTATAAATGATA |
| -31 | 4.1 | TCGTACATTTTATTACA | ||
| Bacillus amyloliquefaciens FZB42 | RBAM_036070 | -68 | 3.3 | CTATAGGTTATTTTACA |
|
Position: 31
Score: 4.2 Sequence: TGTTAGCAAATGGAACA
Locus tag: BMD_4045
|
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| BMD_4045 | 31 | 4.2 | TGTTAGCAAATGGAACA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: thyB | ||||
| Ortholog function: Thymidylate synthase (EC 2.1.1.45) | ||||
| Anoxybacillus flavithermus WK1 | Aflv_1455 | -43 | 5 | TGTCATAATAAATGACA |
| Oceanobacillus iheyensis HTE831 | OB1740 | -98 | 4 | TTTACGATTATGTAACA |
| Paenibacillus sp. JDR-2 | Pjdr2_2655 | -11 | 4.5 | TGATATAAAAAGTGACA |
|
Position: -81
Score: 5.1 Sequence: TGTTAGAATTACTAACA
Locus tag: BMD_4087
|
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| BMD_4087 | -81 | 5.1 | TGTTAGAATTACTAACA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: glnR | ||||
| Ortholog function: Transcriptional regulator of nitrogen excess response, MerR family | ||||
| Bacillus subtilis subsp. subtilis str. 168 | BSU17450 | -82 | 4.3 | TGTTAAGAATCCTTACA |
| -59 | 5 | TGACACATAATATAACA | ||
| Bacillus amyloliquefaciens FZB42 | RBAM_017250 | -82 | 4.3 | TGTTAAGATTCCTTACA |
| -59 | 4.9 | TGACACAAAATATAACA | ||
| Bacillus pumilus SAFR-032 | BPUM_1636 | -82 | 4.4 | TGTTAATATTCCTAACA |
| -59 | 5.1 | TGACATATAATATAACA | ||
| -54 | 4.2 | TATAATATAACATGACA | ||
| Bacillus licheniformis DSM 13 | BLi01992 | -81 | 4.2 | TGTAAAGAATCCTTACA |
| -58 | 5 | TGACACATTATATAACA | ||
| Anoxybacillus flavithermus WK1 | Aflv_1508 | -82 | 4.7 | TGTGATAAAATGTAACG |
| -59 | 4.3 | TGACATATAAGTTAACA | ||
|
Position: -260
Score: 4.1 Sequence: TGTTACATGATTTTACG
Position: -156
Score: 4.4 Sequence: TGGAACATTTTTTCACA
Locus tag: BMD_4533
|
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| BMD_4533 | -260 | 4.1 | TGTTACATGATTTTACG | |
| -156 | 4.4 | TGGAACATTTTTTCACA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: recO | ||||
| Ortholog function: DNA recombination and repair protein RecO | ||||
| Bacillus subtilis subsp. subtilis str. 168 | BSU25280 | -135 | 4.3 | TGTGTCATTATCTCACA |
| Bacillus amyloliquefaciens FZB42 | RBAM_023580 | -310 | 4.9 | TGTGAGATTACCTCACA |
| Bacillus pumilus SAFR-032 | BPUM_2260 | -134 | 5.5 | TGTCATAAAATCTGACA |
| Bacillus licheniformis DSM 13 | BLi02719 | -166 | 4.1 | TGGAATGTATTTTCACA |
| Geobacillus kaustophilus HTA426 | GK2486 | -100 | 4.2 | GGTTAGAAAATTTTACG |
| Bacillus halodurans C-125 | BH1369 | -216 | 4.4 | TGCAAGAAAATGTCACA |