Propagation of TnrA regulog to Bacillus megaterium DSM319

Reference regulog properties
Source regulog:	TnrA - Bacillales
Regulator type:	Transcription factor
Regulator family:	MerR
Regulation mode:	repressor (activator)
Biological process:	Nitrogen assimilation
Effector:	NrgB, ammonium uptake protein; NrgA, ammonium uptake protein; Feedback-inhibited GlnA, glutamine synthetase
Phylum:	Firmicutes
Propagated regulon:
Target genome	Bacillus megaterium DSM319
Orthologous TF(s)	BMD_1959
Regulated genes	53

Built upon 304 sites [see more]

Predicted regulatory interactions in *Bacillus megaterium DSM319*
	Locus tag	Position	Score	Sequence
Position: -161 Score: 3.4 Sequence: CTTTTGTTTTTCTAACA Position: -67 Score: 3.3 Sequence: GAATATAATTTTTAACA Position: -57 Score: 3.7 Sequence: TTTAACATATTTTAAAA Position: 17 Score: 3.3 Sequence: AGTGAATAAATATTACG Locus tag: BMD_0311
	BMD_0311	-161	3.4	CTTTTGTTTTTCTAACA
		-67	3.3	GAATATAATTTTTAACA
		-57	3.7	TTTAACATATTTTAAAA
		17	3.3	AGTGAATAAATATTACG
Supported by regulated orthologs from reference regulons
Ortholog gene name: glnQ
Ortholog function: Glutamine transport ATP-binding protein GlnQ (TC 3.A.1.3.2)
Bacillus subtilis subsp. subtilis str. 168	BSU27430	-28	4	GGTCAAATTTTCTGATA
Bacillus amyloliquefaciens FZB42	RBAM_024530	-123	3.5	TATCAGAAATTACGAAA
Bacillus pumilus SAFR-032	BPUM_2382	-93	3.8	TGTTAAAAATGAATACA
Bacillus clausii KSM-K16	ABC0770	-8	3.4	GGACAGCAATGATCACA
Paenibacillus sp. JDR-2	Pjdr2_2874	-63	4.7	TGTTATCTAACCTAACA

Position: -66 Score: 4.4 Sequence: TGTCATCTTATCTAATA Locus tag: BMD_0416
	BMD_0416	-66	4.4	TGTCATCTTATCTAATA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ygaF
Ortholog function: Peroxiredoxin
Paenibacillus sp. JDR-2	Pjdr2_5899	-34	3.6	GGTTAGTAAACCTGACT

Position: -100 Score: 5 Sequence: TGTTAGAAGTTATAACA Locus tag: BMD_0778
	BMD_0778	-100	5	TGTTAGAAGTTATAACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: nasB
Ortholog function: Nitrite reductase [NAD(P)H] large subunit (EC 1.7.1.4)
Bacillus subtilis subsp. subtilis str. 168	BSU03320	-98	4.9	TGTAAGTTTTTGTGACA
Bacillus amyloliquefaciens FZB42	RBAM_003530	-100	4.8	TGTAAGATAATGCGACA
Bacillus licheniformis DSM 13	BLi00482	-87	5	TGTCAGGAAATGTAACA
Bacillus clausii KSM-K16	ABC1623	-89	5.2	TGTCACAAAATATTACA
Paenibacillus sp. JDR-2	Pjdr2_2175	-223	4	TGTCAATAAACTTAACA
		-159	4	TGTGACCTATATTGACA

Position: -324 Score: 5.1 Sequence: TGTTAGAACTTCTGACA Locus tag: BMD_0948
	BMD_0948	-324	5.1	TGTTAGAACTTCTGACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: BH0746
Ortholog function: N-ethylammeline chlorohydrolase
Bacillus halodurans C-125	BH0746	-245	4	TGATAAGTTACCTTACA
Paenibacillus sp. JDR-2	Pjdr2_3326	-55	4.9	TGTTATATAAAGTAACA

Position: 4 Score: 3.7 Sequence: AGTTAGTAAATATAATA Locus tag: BMD_1045
	BMD_1045	4	3.7	AGTTAGTAAATATAATA
Supported by regulated orthologs from reference regulons
Ortholog gene name: Pjdr2_5901
Ortholog function: Fumarylacetoacetate (FAA) hydrolase
Paenibacillus sp. JDR-2	Pjdr2_5901	-34	3.6	GGTTAGTAAACCTGACT

Position: -127 Score: 5.3 Sequence: TGTTAGATAACCTAACA Locus tag: BMD_1140
	BMD_1140	-127	5.3	TGTTAGATAACCTAACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: nasD
Ortholog function: Nitrite reductase [NAD(P)H] large subunit (EC 1.7.1.4)
Bacillus subtilis subsp. subtilis str. 168	BSU03300	-95	4.1	TCGTATATTTTGTTACA
		-85	5.3	TGTTACATTTTATAACA
Bacillus amyloliquefaciens FZB42	RBAM_003510	-84	4.9	TGTTACATTTCATAACA
Bacillus licheniformis DSM 13	BLi00484	-87	5	TGTCAGGAAATGTAACA
Geobacillus kaustophilus HTA426	GK1868	-286	4.6	TGTGATAAAAAGTTACA
		-202	5.2	TGTTATATAAACTGACA
Bacillus halodurans C-125	BH0613	-80	4.6	TGTAAGATATCCTCCCA
Bacillus clausii KSM-K16	ABC1621	-89	5.2	TGTCACAAAATATTACA

Position: -131 Score: 4.8 Sequence: TGTCACTTTTTCTCACA Position: -87 Score: 4.8 Sequence: TGTTAGAATGTATTACA Locus tag: BMD_1959
	BMD_1959	-131	4.8	TGTCACTTTTTCTCACA
		-87	4.8	TGTTAGAATGTATTACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: tnrA
Ortholog function: Transcriptional regulator of nitrogen assimilation, MerR family
Bacillus subtilis subsp. subtilis str. 168	BSU13310	-124	3.9	TGTTAATTTTTCTTCCG
		-81	5.5	TGTTAGAAAATATGACA
Bacillus amyloliquefaciens FZB42	RBAM_013130	-124	4.1	TGTCAATTTTTCTGCCG
		-81	4.8	CGTCAGAAAACCTGACA
Bacillus pumilus SAFR-032	BPUM_1230	-121	4	TGTCAACTTTCCTTCCA
		-80	5.5	TGTTATATTTTCTAACA
Bacillus licheniformis DSM 13	BLi01490	-124	3.8	TGTAAACTTTTCTTCCG
		-81	5.6	TGTTAGATTTTCTGACA
Anoxybacillus flavithermus WK1	Aflv_1544	-113	4.9	TGTTACTTTTTATAACA
		-82	4.9	TGTTACTTTTTATAACA
		-27	5.4	TGTTATAAAATATGACA
Geobacillus kaustophilus HTA426	GK1860	-86	3.9	TGTTAATTTTATTTACA
		-33	4.6	CGTTAGAAAATATAACG
Bacillus halodurans C-125	BH1494	-110	5.5	TGTAAGAAAATCTAACA
Bacillus clausii KSM-K16	ABC1760	-99	5.5	TGTTAGATTTTCTTACA
		-57	5	TGTGATATATTGTTACA
Oceanobacillus iheyensis HTE831	OB1650	-80	5.1	TGTTAGAAATACTAACA
		-57	4.3	TGACATATAAGCTGACG
Paenibacillus sp. JDR-2	Pjdr2_5154	-302	5.7	TGTTAGATAATCTAACA
		-41	5	TGTTAGAAAACATTACA

Position: -227 Score: 4.8 Sequence: TGTAATACATTCTAACA Position: -183 Score: 4.8 Sequence: TGTGAGAAAAAGTGACA Locus tag: BMD_1960
	BMD_1960	-227	4.8	TGTAATACATTCTAACA
		-183	4.8	TGTGAGAAAAAGTGACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ykzB
Ortholog function: Hypothetical protein
Bacillus subtilis subsp. subtilis str. 168	BSU13320	-130	5.5	TGTCATATTTTCTAACA
		-87	3.9	CGGAAGAAAAATTAACA
Bacillus amyloliquefaciens FZB42	RBAM_013140	-130	4.8	TGTCAGGTTTTCTGACG
		-87	4.1	CGGCAGAAAAATTGACA
Anoxybacillus flavithermus WK1	Aflv_1546	-172	5.4	TGTCATATTTTATAACA
		-117	4.9	TGTTATAAAAAGTAACA
		-86	4.9	TGTTATAAAAAGTAACA
Geobacillus kaustophilus HTA426	GK1862	-176	4.6	CGTTATATTTTCTAACG
		-123	3.9	TGTAAATAAAATTAACA

Position: -119 Score: 4.4 Sequence: TGTCAGGTTTCTTTACA Locus tag: BMD_2011
	BMD_2011	-119	4.4	TGTCAGGTTTCTTTACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: pucH
Ortholog function: Allantoinase (EC 3.5.2.5)
Bacillus subtilis subsp. subtilis str. 168	BSU32410	-51	5.1	TGTTACATAAACTGACA
Bacillus amyloliquefaciens FZB42	RBAM_029500	-50	4.9	TGTGATAAAAACTGACA
Bacillus halodurans C-125	BH2309	-260	4.5	TGTCATAAAGCCTAACA
		-71	4.2	TATCAGAAAATATAAAA
Bacillus clausii KSM-K16	ABC3732	-173	4.2	TGTAAACAATCCTAACA
Bacillus clausii KSM-K16	ABC3732	-173	4.2	TGTAAACAATCCTAACA
Paenibacillus sp. JDR-2	Pjdr2_3313	-179	4.1	TGTGATCTATTGTTACG
		-96	4.3	TGTAAGATATATTGACG

Position: -190 Score: 5.3 Sequence: TGTCAAATATTCTGACA Locus tag: BMD_2469
	BMD_2469	-190	5.3	TGTCAAATATTCTGACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: lamB
Ortholog function: Lactam utilization protein LamB
Bacillus subtilis subsp. subtilis str. 168	BSU04050	-145	4.9	TGGTAGGTTTTCTGACA
		-52	3.9	CGGGACAATAAATGACA
Bacillus amyloliquefaciens FZB42	RBAM_004280	-137	4.9	TGGTAGGTTTTCTGACA
Bacillus pumilus SAFR-032	BPUM_0379	-113	5.5	TGTTATATTTTCTAACA
Bacillus licheniformis DSM 13	BLi00498	-155	4.6	TGTGAGGTTTCCTAACA

Position: -61 Score: 5.3 Sequence: TGTTAGAAAATATCACA Locus tag: BMD_2991
	BMD_2991	-61	5.3	TGTTAGAAAATATCACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ureA
Ortholog function: Urease gamma subunit (EC 3.5.1.5)
Geobacillus kaustophilus HTA426	GK1932	-224	4.3	TGATAATAAATATAACA
		-201	5.2	TGTAATAAAATGTGACA
Paenibacillus sp. JDR-2	Pjdr2_4328	-84	5.2	TGTCATATTACCTAACA

Position: -290 Score: 4.9 Sequence: TGTTAAAAATTCTCACA Position: -134 Score: 4.6 Sequence: TGTTAGAAAAAGTGACG Locus tag: BMD_3036
	BMD_3036	-290	4.9	TGTTAAAAATTCTCACA
		-134	4.6	TGTTAGAAAAAGTGACG
Supported by regulated orthologs from reference regulons
Ortholog gene name: pucF
Ortholog function: Allantoate amidohydrolase (EC 3.5.3.9)
Bacillus licheniformis DSM 13	BLi03435	-43	4.6	TGTAAAGAAATATAACA
Paenibacillus sp. JDR-2	Pjdr2_3312	-179	4.1	TGTGATCTATTGTTACG
		-96	4.3	TGTAAGATATATTGACG

Position: -43 Score: 4.8 Sequence: TGTCAGGTTTTTTTACA Locus tag: BMD_3100
	BMD_3100	-43	4.8	TGTCAGGTTTTTTTACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: Pjdr2_5900
Ortholog function: Asparaginase/glutaminase
Paenibacillus sp. JDR-2	Pjdr2_5900	-34	3.6	GGTTAGTAAACCTGACT

Position: -216 Score: 3.2 Sequence: ATTTATATATACTAAAA Position: -126 Score: 3.3 Sequence: TCTAACCTATTATTAAA Locus tag: BMD_3564
	BMD_3564	-216	3.2	ATTTATATATACTAAAA
		-126	3.3	TCTAACCTATTATTAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: yxkC
Ortholog function: Hypothetical protein
Bacillus subtilis subsp. subtilis str. 168	BSU38850	-117	3.6	TGTAACTATAAATGATA
		-31	4.1	TCGTACATTTTATTACA
Bacillus amyloliquefaciens FZB42	RBAM_036070	-68	3.3	CTATAGGTTATTTTACA

Position: 31 Score: 4.2 Sequence: TGTTAGCAAATGGAACA Locus tag: BMD_4045
	BMD_4045	31	4.2	TGTTAGCAAATGGAACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: thyB
Ortholog function: Thymidylate synthase (EC 2.1.1.45)
Anoxybacillus flavithermus WK1	Aflv_1455	-43	5	TGTCATAATAAATGACA
Oceanobacillus iheyensis HTE831	OB1740	-98	4	TTTACGATTATGTAACA
Paenibacillus sp. JDR-2	Pjdr2_2655	-11	4.5	TGATATAAAAAGTGACA

Position: -81 Score: 5.1 Sequence: TGTTAGAATTACTAACA Locus tag: BMD_4087
	BMD_4087	-81	5.1	TGTTAGAATTACTAACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: glnR
Ortholog function: Transcriptional regulator of nitrogen excess response, MerR family
Bacillus subtilis subsp. subtilis str. 168	BSU17450	-82	4.3	TGTTAAGAATCCTTACA
		-59	5	TGACACATAATATAACA
Bacillus amyloliquefaciens FZB42	RBAM_017250	-82	4.3	TGTTAAGATTCCTTACA
		-59	4.9	TGACACAAAATATAACA
Bacillus pumilus SAFR-032	BPUM_1636	-82	4.4	TGTTAATATTCCTAACA
		-59	5.1	TGACATATAATATAACA
		-54	4.2	TATAATATAACATGACA
Bacillus licheniformis DSM 13	BLi01992	-81	4.2	TGTAAAGAATCCTTACA
		-58	5	TGACACATTATATAACA
Anoxybacillus flavithermus WK1	Aflv_1508	-82	4.7	TGTGATAAAATGTAACG
		-59	4.3	TGACATATAAGTTAACA

Position: -260 Score: 4.1 Sequence: TGTTACATGATTTTACG Position: -156 Score: 4.4 Sequence: TGGAACATTTTTTCACA Locus tag: BMD_4533
	BMD_4533	-260	4.1	TGTTACATGATTTTACG
		-156	4.4	TGGAACATTTTTTCACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: recO
Ortholog function: DNA recombination and repair protein RecO
Bacillus subtilis subsp. subtilis str. 168	BSU25280	-135	4.3	TGTGTCATTATCTCACA
Bacillus amyloliquefaciens FZB42	RBAM_023580	-310	4.9	TGTGAGATTACCTCACA
Bacillus pumilus SAFR-032	BPUM_2260	-134	5.5	TGTCATAAAATCTGACA
Bacillus licheniformis DSM 13	BLi02719	-166	4.1	TGGAATGTATTTTCACA
Geobacillus kaustophilus HTA426	GK2486	-100	4.2	GGTTAGAAAATTTTACG
Bacillus halodurans C-125	BH1369	-216	4.4	TGCAAGAAAATGTCACA

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Propagation of TnrA regulog to Bacillus megaterium DSM319

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --