Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of LexA regulog to Bacillus megaterium DSM319

Reference regulog properties
Source regulog: LexA - Bacillales
Regulator type: Transcription factor
Regulator family: LexA
Regulation mode: repressor
Biological process: SOS response
Effector: DNA damage
Phylum: Firmicutes
Propagated regulon:
Target genome Bacillus megaterium DSM319
Orthologous TF(s) BMD_4077
Regulated genes 10
Built upon 206 sites [see more]
Predicted regulatory interactions in Bacillus megaterium DSM319
Locus tag Position Score Sequence
Position: -8
Score: 4.9
Sequence: GAGAATATATGTTCGA
Locus tag: BMD_0288
BMD_0288 -8 4.9 GAGAATATATGTTCGA
Supported by regulated orthologs from reference regulons
Ortholog gene name: pcrA
Ortholog function: ATP-dependent DNA helicase
Bacillus subtilis subsp. subtilis str. 168 BSU06610 -36 4.4 TAGAACGTATGTTTTG
Bacillus amyloliquefaciens FZB42 RBAM_007010 -32 5.2 TAGAACATATGTTTGA
Bacillus pumilus SAFR-032 BPUM_0625 -32 5.2 TAGAACATAAGTTCGA
Bacillus licheniformis DSM 13 BLi00715 -33 5.2 TAGAACATATGTTTGA
Anoxybacillus flavithermus WK1 Aflv_0246 -13 4.5 GAGAACATATGTTTTG
Geobacillus kaustophilus HTA426 GK0275 -31 4.8 TAGAACATATGTTTTG
Bacillus halodurans C-125 BH0648 -8 4.6 AAGAACAAGTGTTTGG
Position: -77
Score: 4.4
Sequence: TAAAACTTTTGTTTGG
Locus tag: BMD_0640
BMD_0640 -77 4.4 TAAAACTTTTGTTTGG
Supported by regulated orthologs from reference regulons
Ortholog gene name: yhjE
Ortholog function: Alkaline phosphatase like protein
Bacillus amyloliquefaciens FZB42 RBAM_010700 -128 4.4 GAGAACCTTTGTTCTT
Bacillus pumilus SAFR-032 BPUM_0990 -128 4.6 TAGAACACACGTTCTT
Bacillus licheniformis DSM 13 BLi01121 -179 4.5 AGGAACATTTGTTCTG
Anoxybacillus flavithermus WK1 Aflv_2232 -174 4.3 GCGAACAAATGATCGA
34 4.3 TAAAACATATGCTTGA
Oceanobacillus iheyensis HTE831 OB1179 -166 4.7 CAGATCATATGTTCGT
Position: -178
Score: 4.9
Sequence: AGGAACATTTGTTCGA
Locus tag: BMD_1726
BMD_1726 -178 4.9 AGGAACATTTGTTCGA
Supported by regulated orthologs from reference regulons
Ortholog gene name: recA
Ortholog function: Recombination protein A
Bacillus subtilis subsp. subtilis str. 168 BSU16940 -87 4.7 CCGAATATGCGTTCGC
Bacillus amyloliquefaciens FZB42 RBAM_016780 -86 4.7 CCGAATATGCGTTCGC
Bacillus pumilus SAFR-032 BPUM_1598 -88 5.2 TCGAATATGTGTTCGT
Bacillus licheniformis DSM 13 BLi01918 -259 4.3 TCGAATTTCAGTTCGC
-86 4.8 TCGAATATGCGTTCGC
Anoxybacillus flavithermus WK1 Aflv_1530 34 4.7 ACGAACATCTATTCGT
Geobacillus kaustophilus HTA426 GK1295 -85 4.4 ACGAATGGACGTTCGT
Bacillus cereus ATCC 14579 BC3779 -85 5.1 TCGAATAAATGTTCGA
Bacillus halodurans C-125 BH2383 -343 4 AAAAATTCACGTTTGT
-121 4.9 GCGAATAAATGTTCGT
Bacillus clausii KSM-K16 ABC2199 -132 5.3 ACGAATAAATGTTCGT
Oceanobacillus iheyensis HTE831 OB1624 -82 4.4 AAGAACATCCATTCGT
Paenibacillus sp. JDR-2 Pjdr2_3379 -297 3.9 GCGAACAATAATTTGT
-84 4.9 ACGAATGTATGTTCGA
Position: -141
Score: 4.4
Sequence: AGAAACATACGTTCTG
Locus tag: BMD_2534
BMD_2534 -141 4.4 AGAAACATACGTTCTG
Supported by regulated orthologs from reference regulons
Ortholog gene name: parE
Ortholog function: Topoisomerase IV subunit B (EC 5.99.1.-)
Bacillus subtilis subsp. subtilis str. 168 BSU18090 -220 4.9 ACAAACATACGTTCTC
Bacillus amyloliquefaciens FZB42 RBAM_017900 -243 4.3 GCGAACTCATGTTCTT
Bacillus pumilus SAFR-032 BPUM_1709 -246 4.8 TAGAACATTTGTTCTG
Anoxybacillus flavithermus WK1 Aflv_1444 -30 4.7 AGAAACAAATGTTCTT
Geobacillus kaustophilus HTA426 GK1751 -40 4.1 AGAAACAGGTGTTCTT
Bacillus cereus ATCC 14579 BC3597 -44 4.6 AGAAACATATGTTCTG
Bacillus halodurans C-125 BH2140 -72 4.9 CCGAACATGCGTTTGT
Bacillus clausii KSM-K16 ABC1989 -64 4.5 CAGAACAAACATTCGT
Oceanobacillus iheyensis HTE831 OB1693 -57 4.6 AAGAACAGTTGTTCTA
Paenibacillus sp. JDR-2 Pjdr2_2492 -172 4 GCGAATTTATGTTATT
Position: -130
Score: 5
Sequence: CAGAATATATGTTCTT
Position: -76
Score: 5.2
Sequence: TCGAACTTATGTTTGT
Locus tag: BMD_4077
BMD_4077 -130 5 CAGAATATATGTTCTT
-76 5.2 TCGAACTTATGTTTGT
Supported by regulated orthologs from reference regulons
Ortholog gene name: lexA
Ortholog function: SOS-response transcriptional repressor
Bacillus subtilis subsp. subtilis str. 168 BSU17850 -139 4.2 AGGAATGTTTGTTCGC
-102 4.4 ACGAACAAACGTTTCT
-73 5.1 TCGAACCTATGTTTGT
Bacillus amyloliquefaciens FZB42 RBAM_017650 -140 4.5 AAGAATGTTTGTTCGC
-103 4.4 ACGAACAAACGTTTCT
-73 5.1 TCGAACCTATGTTTGT
Bacillus pumilus SAFR-032 BPUM_1686 -142 4.6 TAGAATGTGTGTTCGT
-103 4.4 ACGAACAAACGTTTCT
-73 5.1 TCGAACCTATGTTTGT
Bacillus licheniformis DSM 13 BLi02032 -346 4.1 ATGAATTTGTGTTTGT
-141 4.2 CAGAATGTTTGTTCGG
-103 4.6 ACGAACAAATGTTTCT
-73 5.1 TCGAACCTATGTTTGT
Anoxybacillus flavithermus WK1 Aflv_1506 -110 5.2 TAGAACATTTGTTTGT
-82 4.8 GAGAACTTTTGTTCGT
-53 5.2 TCGAACTTATGTTTGT
Geobacillus kaustophilus HTA426 GK1328 -136 4.5 TAGAATGTTTGTTCGC
-103 4.9 AGGAACATTTGTTTGT
-74 5.1 TCGAACCTATGTTTGT
Bacillus cereus ATCC 14579 BC3690 -70 5.2 TCGAACTTATGTTTGT
Bacillus halodurans C-125 BH2356 -107 4.7 AAGAACACTTGTTTGT
-78 4.9 TAGAACTTATGTTTGC
Bacillus clausii KSM-K16 ABC2167 -107 4.6 AGGAACAACTGTTCGT
-76 4.9 TAGAACTTATGTTTGC
Oceanobacillus iheyensis HTE831 OB1669 -142 4.8 CAGAACAATTGTTCTT
-107 4.6 CCGAACATATGATCTT
-78 4.2 TAGAACGAGTGTTTGC
Paenibacillus sp. JDR-2 Pjdr2_2621 -157 4.4 CCGAACGTTTGTTCTG
-118 5.1 ACGAACAAATGTTTGC
-72 5.1 AAGAACTTATGTTTGT
Position: -145
Score: 4.7
Sequence: ACGAACATTTATTCGC
Locus tag: BMD_4106
BMD_4106 -145 4.7 ACGAACATTTATTCGC
Supported by regulated orthologs from reference regulons
Ortholog gene name: recA
Ortholog function: Recombination protein A
Bacillus subtilis subsp. subtilis str. 168 BSU16940 -87 4.7 CCGAATATGCGTTCGC
Bacillus amyloliquefaciens FZB42 RBAM_016780 -86 4.7 CCGAATATGCGTTCGC
Bacillus pumilus SAFR-032 BPUM_1598 -88 5.2 TCGAATATGTGTTCGT
Bacillus licheniformis DSM 13 BLi01918 -259 4.3 TCGAATTTCAGTTCGC
-86 4.8 TCGAATATGCGTTCGC
Anoxybacillus flavithermus WK1 Aflv_1530 34 4.7 ACGAACATCTATTCGT
Geobacillus kaustophilus HTA426 GK1295 -85 4.4 ACGAATGGACGTTCGT
Bacillus cereus ATCC 14579 BC3779 -85 5.1 TCGAATAAATGTTCGA
Bacillus halodurans C-125 BH2383 -343 4 AAAAATTCACGTTTGT
-121 4.9 GCGAATAAATGTTCGT
Bacillus clausii KSM-K16 ABC2199 -132 5.3 ACGAATAAATGTTCGT
Oceanobacillus iheyensis HTE831 OB1624 -82 4.4 AAGAACATCCATTCGT
Paenibacillus sp. JDR-2 Pjdr2_3379 -297 3.9 GCGAACAATAATTTGT
-84 4.9 ACGAATGTATGTTCGA
Position: -112
Score: 3.9
Sequence: CAGAACGATTGTTCCT
Locus tag: BMD_4573
BMD_4573 -112 3.9 CAGAACGATTGTTCCT
Supported by regulated orthologs from reference regulons
Ortholog gene name: sda
Ortholog function: Sporulation inhibitor sda
Bacillus subtilis subsp. subtilis str. 168 BSU25690 -127 4.4 CAGAACGATTGTTCTT
Bacillus amyloliquefaciens FZB42 RBAM_023990 -144 4.4 CAGAACGATTGTTCTT
Bacillus pumilus SAFR-032 BPUM_2304 -145 4.4 CAGAACGATTGTTCTT
Bacillus licheniformis DSM 13 BLi02762 -145 4.2 CAGAACGATTGTTCTC
Anoxybacillus flavithermus WK1 Aflv_0810 -181 4 AAAAACCGACGTTTTT
-57 4.4 CAGAACGATTGTTCTT
Geobacillus kaustophilus HTA426 GK2527 -105 3.9 CAGAACGGTTGTTCTC
Position: -154
Score: 4.7
Sequence: GCGAATATGCGTTCGT
Locus tag: BMD_4714
BMD_4714 -154 4.7 GCGAATATGCGTTCGT
Supported by regulated orthologs from reference regulons
Ortholog gene name: uvrC
Ortholog function: Excinuclease ABC subunit C
Bacillus subtilis subsp. subtilis str. 168 BSU28490 -59 5 AAAAACAAACGTTCGT
Bacillus amyloliquefaciens FZB42 RBAM_025550 -62 5.2 AAAAACAAATGTTCGT
Bacillus pumilus SAFR-032 BPUM_2506 -62 5.2 TAAAACAAATGTTCGT
Bacillus cereus ATCC 14579 BC4520 -83 4.1 AAGAACGTATGTTGGG
Paenibacillus sp. JDR-2 Pjdr2_4818 -329 4.3 CGAAACATGCGTTCGA
Position: -82
Score: 4.8
Sequence: ACGAATATCAGTTCGT
Locus tag: BMD_5069
BMD_5069 -82 4.8 ACGAATATCAGTTCGT
Supported by regulated orthologs from reference regulons
Ortholog gene name: uvrB
Ortholog function: Excinuclease ABC subunit B
Bacillus subtilis subsp. subtilis str. 168 BSU35170 -93 4.9 CCGAACTTTAGTTCGT
Bacillus amyloliquefaciens FZB42 RBAM_032310 -90 5 TCGAACTTTAGTTCGT
Bacillus pumilus SAFR-032 BPUM_3148 -82 4.9 CCGAACTTTAGTTCGT
Bacillus licheniformis DSM 13 BLi03759 -81 4.9 CCGAACTTTAGTTCGT
Anoxybacillus flavithermus WK1 Aflv_2547 -81 5.1 TAGAATATTTGTTCGT
Geobacillus kaustophilus HTA426 GK3086 -85 4.8 ACGAATATGAGTTCGC
Bacillus cereus ATCC 14579 BC5168 -86 4.9 CCGAATATCTGTTCGT
Bacillus halodurans C-125 BH3595 -91 4.9 CAAAACAAACGTTCGT
Bacillus clausii KSM-K16 ABC3059 -337 4.4 TAGTACGTATGTTCGT
Oceanobacillus iheyensis HTE831 OB2488 -70 4.7 ACGAATACTTGTTCGT
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