Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
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Propagation of XylR regulog to Bacillus megaterium DSM319

Reference regulog properties
Source regulog: XylR - Bacillales
Regulator type: Transcription factor
Regulator family: ROK
Regulation mode: repressor
Biological process: Xylose utilization
Effector: Xylose
Phylum: Firmicutes
Propagated regulon:
Target genome Bacillus megaterium DSM319
Orthologous TF(s) BMD_1857
Regulated genes 2
Built upon 28 sites [see more]
Predicted regulatory interactions in Bacillus megaterium DSM319
Locus tag Position Score Sequence
Position: -168
Score: 6.1
Sequence: AGTTAGTTTGTTTATCCAATAAACT
Position: -164
Score: 7
Sequence: AGTTTGTTTATCCAATAAACTAACT
Locus tag: BMD_1857
BMD_1857 -168 6.1 AGTTAGTTTGTTTATCCAATAAACT
-164 7 AGTTTGTTTATCCAATAAACTAACT
Supported by regulated orthologs from reference regulons
Ortholog gene name: xylR
Ortholog function: Transcriptional repressor of the xylose metabolism, ROK family
Bacillus subtilis subsp. subtilis str. 168 BSU17590 -268 6.6 AGTTTGTTGTTTAAACAAACTAACT
Bacillus amyloliquefaciens FZB42 RBAM_017340 -187 6.1 AGTTTGTTGCCCAAACAAACTAACT
Bacillus pumilus SAFR-032 BPUM_1830 -191 5.9 ACTTTGTAAGTTGATTCAACAAACT
Bacillus licheniformis DSM 13 BLi04049 -147 6.4 TGTTTGTTTAACCATTAAACTAACT
Geobacillus kaustophilus HTA426 GK2422 -230 6 AATTAGTTTATTATATAAACTAAGA
Bacillus halodurans C-125 BH2758 -151 6.7 ACTTAGTTTATTCAATAGACAAACT
Oceanobacillus iheyensis HTE831 OB3124 -87 5.8 TGTTTGTCTACCGGTTAAACAAAGT
Paenibacillus sp. JDR-2 Pjdr2_5182 -113 6.7 AGTTTGTCTATTAAACAAACTAAGT
Position: -86
Score: 7
Sequence: AGTTAGTTTATTGGATAAACAAACT
Position: -82
Score: 6.1
Sequence: AGTTTATTGGATAAACAAACTAACT
Locus tag: BMD_1858
BMD_1858 -86 7 AGTTAGTTTATTGGATAAACAAACT
-82 6.1 AGTTTATTGGATAAACAAACTAACT
Supported by regulated orthologs from reference regulons
Ortholog gene name: xylA
Ortholog function: Xylose isomerase (EC 5.3.1.5)
Bacillus subtilis subsp. subtilis str. 168 BSU17600 -100 6.6 AGTTAGTTTGTTTAAACAACAAACT
Bacillus amyloliquefaciens FZB42 RBAM_017350 -101 6.1 AGTTAGTTTGTTTGGGCAACAAACT
Bacillus pumilus SAFR-032 BPUM_1829 -47 5.9 AGTTTGTTGAATCAACTTACAAAGT
Bacillus licheniformis DSM 13 BLi04048 -69 6.4 AGTTAGTTTAATGGTTAAACAAACA
Geobacillus kaustophilus HTA426 GK1875 -87 6.3 ACTTTGTTTATATGATAGACAAACA
Bacillus halodurans C-125 BH2757 -102 6.7 AGTTTGTCTATTGAATAAACTAAGT
Bacillus clausii KSM-K16 ABC0572 -45 6.3 ACTTAGTTTAAATAATAAACAAACC
Oceanobacillus iheyensis HTE831 OB3119 -44 6.7 ACTTTGTTTGTTAGATAAACAAACA
Paenibacillus sp. JDR-2 Pjdr2_5159 -123 6.7 AGTTTGTTTAATAGACAAACTAAGT
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