Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of MalR regulog to Bacillus amyloliquefaciens FZB42

Reference regulog properties
Source regulog: MalR - Bacillales
Regulator type: Transcription factor
Regulator family: CitB
Regulation mode: activator
Biological process: Malate utilization
Effector: MalK, sensor histidine kinase (malate)
Phylum: Firmicutes
Propagated regulon:
Target genome Bacillus amyloliquefaciens FZB42
Orthologous TF(s) RBAM_028630
Regulated genes 3
Built upon 11 sites [see more]
Predicted regulatory interactions in Bacillus amyloliquefaciens FZB42
Locus tag Position Score Sequence
Position: -99
Score: 5.3
Sequence: TTCCTTTGTGT-(3)-TTAATTAACAA
Position: -98
Score: 5.1
Sequence: TCCTTTGTGTT-(13)-AAACGTTTATT
Position: -95
Score: 6.1
Sequence: TTTGTGTTTTT-(10)-AAACGTTTATT
Position: -94
Score: 6.1
Sequence: TTGTGTTTTTT-(9)-AAACGTTTATT
Position: -93
Score: 5.6
Sequence: TGTGTTTTTTA-(8)-AAACGTTTATT
Position: -91
Score: 5.5
Sequence: TGTTTTTTAAT-(6)-AAACGTTTATT
Position: -90
Score: 6
Sequence: GTTTTTTAATT-(5)-AAACGTTTATT
Position: -89
Score: 6.1
Sequence: TTTTTTAATTA-(13)-TTAACTTAGTT
Position: -86
Score: 6.1
Sequence: TTTAATTAACA-(10)-TTAACTTAGTT
Position: -85
Score: 6.2
Sequence: TTAATTAACAA-(9)-TTAACTTAGTT
Position: -74
Score: 5.9
Sequence: AAACGTTTATT-(3)-TTAGTTAAGTA
Locus tag: RBAM_007730
RBAM_007730 -99 5.3 TTCCTTTGTGT-(3)-TTAATTAACAA
-98 5.1 TCCTTTGTGTT-(13)-AAACGTTTATT
-95 6.1 TTTGTGTTTTT-(10)-AAACGTTTATT
-94 6.1 TTGTGTTTTTT-(9)-AAACGTTTATT
-93 5.6 TGTGTTTTTTA-(8)-AAACGTTTATT
-91 5.5 TGTTTTTTAAT-(6)-AAACGTTTATT
-90 6 GTTTTTTAATT-(5)-AAACGTTTATT
-89 6.1 TTTTTTAATTA-(13)-TTAACTTAGTT
-86 6.1 TTTAATTAACA-(10)-TTAACTTAGTT
-85 6.2 TTAATTAACAA-(9)-TTAACTTAGTT
-74 5.9 AAACGTTTATT-(3)-TTAGTTAAGTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: yflS
Ortholog function: Putative malate transporter
Bacillus amyloliquefaciens FZB42 RBAM_007730 -89 5.2 TTTTTTAATTA-(9)-TTTATTAACTT
Bacillus halodurans C-125 BH3327 -63 7.4 TTGCTCTTTTA-(6)-CTACTTTTTTT
-46 7.7 CTACTTTTTTT-(6)-TTAGGTTAATC
Bacillus subtilis subsp. subtilis str. 168 BSU07570 -91 5.2 TTTTTTAATTA-(9)-TTTATTAACTT
Position: -77
Score: 6.4
Sequence: TTAATTTTACA-(10)-AAGCTTTTATG
Position: 0
Score: 5.7
Sequence: TTGAGCTTCTT-(2)-ATATTTTAATC
Position: 9
Score: 5.1
Sequence: TTAGATATTTT-(13)-CCGATCTTTTT
Position: 13
Score: 5.4
Sequence: ATATTTTAATC-(9)-CCGATCTTTTT
Locus tag: RBAM_034200
RBAM_034200 -77 6.4 TTAATTTTACA-(10)-AAGCTTTTATG
0 5.7 TTGAGCTTCTT-(2)-ATATTTTAATC
9 5.1 TTAGATATTTT-(13)-CCGATCTTTTT
13 5.4 ATATTTTAATC-(9)-CCGATCTTTTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ywkB
Ortholog function: Malate permease
Bacillus amyloliquefaciens FZB42 RBAM_034200 -206 -0.8 AACTTAAAAAA-(10)-AAATTAAGTAA
Bacillus licheniformis DSM 13 BLi03952 -242 -0.8 AACTTAATTAA-(10)-AAATTAACTAA
Bacillus pumilus SAFR-032 BPUM_3347 -209 0.5 AAATTAAATAA-(10)-AAATTATCTAA
Position: -236
Score: 5.7
Sequence: TTGACGTTTTT-(13)-TTAAATAACTT
Position: -235
Score: 6.5
Sequence: TGACGTTTTTT-(12)-TTAAATAACTT
Position: -187
Score: 5.2
Sequence: AAAAATTAAGT-(13)-TGAATTTTCAT
Position: -183
Score: 5.2
Sequence: ATTAAGTAATT-(9)-TGAATTTTCAT
Position: -182
Score: 6.4
Sequence: TTAAGTAATTT-(13)-TTTCATTTTTA
Position: -181
Score: 5.4
Sequence: TAAGTAATTTT-(13)-TTCATTTTTAC
Position: -178
Score: 6.3
Sequence: GTAATTTTCAT-(10)-TTCATTTTTAC
Position: -177
Score: 6.1
Sequence: TAATTTTCATC-(9)-TTCATTTTTAC
Position: -173
Score: 5.6
Sequence: TTTCATCTCTT-(5)-TTCATTTTTAC
Position: -172
Score: 5.4
Sequence: TTCATCTCTTG-(4)-TTCATTTTTAC
Position: -47
Score: 5.3
Sequence: GTAATTACTTA-(6)-TTAACTATTTG
Position: -43
Score: 6.5
Sequence: TTACTTAACTT-(2)-TTAACTATTTG
Position: -30
Score: 5.2
Sequence: TTAACTATTTG-(10)-GAGATTTTCTT
Position: -4
Score: 5.2
Sequence: TTTCTTGAATA-(3)-TTAAAGTAACG
Locus tag: RBAM_034210
RBAM_034210 -236 5.7 TTGACGTTTTT-(13)-TTAAATAACTT
-235 6.5 TGACGTTTTTT-(12)-TTAAATAACTT
-187 5.2 AAAAATTAAGT-(13)-TGAATTTTCAT
-183 5.2 ATTAAGTAATT-(9)-TGAATTTTCAT
-182 6.4 TTAAGTAATTT-(13)-TTTCATTTTTA
-181 5.4 TAAGTAATTTT-(13)-TTCATTTTTAC
-178 6.3 GTAATTTTCAT-(10)-TTCATTTTTAC
-177 6.1 TAATTTTCATC-(9)-TTCATTTTTAC
-173 5.6 TTTCATCTCTT-(5)-TTCATTTTTAC
-172 5.4 TTCATCTCTTG-(4)-TTCATTTTTAC
-47 5.3 GTAATTACTTA-(6)-TTAACTATTTG
-43 6.5 TTACTTAACTT-(2)-TTAACTATTTG
-30 5.2 TTAACTATTTG-(10)-GAGATTTTCTT
-4 5.2 TTTCTTGAATA-(3)-TTAAAGTAACG
Supported by regulated orthologs from reference regulons
Ortholog gene name: ywkA
Ortholog function: NAD-dependent malate dehydrogenase (EC 1.1.1.38)
Bacillus amyloliquefaciens FZB42 RBAM_034210 -206 -0.8 AACTTAAAAAA-(10)-AAATTAAGTAA
Bacillus licheniformis DSM 13 BLi03953 -242 -0.8 AACTTAATTAA-(10)-AAATTAACTAA
Bacillus pumilus SAFR-032 BPUM_3348 -209 0.5 AAATTAAATAA-(10)-AAATTATCTAA
Bacillus subtilis subsp. subtilis str. 168 BSU37050 -156 -1 AATTTAAATAA-(10)-AAATTAAGTAA
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