Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
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Propagation of AraR regulog to Bacillus amyloliquefaciens FZB42

Reference regulog properties
Source regulog: AraR - Bacillales
Regulator type: Transcription factor
Regulator family: GntR/Others
Regulation mode: repressor
Biological process: Arabinose utilization
Effector: Arabinose
Phylum: Firmicutes
Propagated regulon:
Target genome Bacillus amyloliquefaciens FZB42
Orthologous TF(s) RBAM_031330
Regulated genes 5
Built upon 43 sites [see more]
Predicted regulatory interactions in Bacillus amyloliquefaciens FZB42
Locus tag Position Score Sequence
Position: -169
Score: 5.6
Sequence: TAATTGGTTCGTACAAATTA
Locus tag: RBAM_025570
RBAM_025570 -169 5.6 TAATTGGTTCGTACAAATTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: xsa
Ortholog function: Alpha-N-arabinofuranosidase 2 (EC 3.2.1.55)
Bacillus subtilis subsp. subtilis str. 168 BSU28510 -173 5.5 AAATACATACGTACAAATAT
Bacillus amyloliquefaciens FZB42 RBAM_025570 -169 5.6 TAATTGGTTCGTACAAATTA
Bacillus halodurans C-125 BH1874 -71 5.7 AAAATTGTACGTACAAGTGT
Position: -99
Score: 5.8
Sequence: AAAATTGTTCGTACAAATAA
Locus tag: RBAM_025860
RBAM_025860 -99 5.8 AAAATTGTTCGTACAAATAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: araA
Ortholog function: L-arabinose isomerase (EC 5.3.1.4)
Bacillus subtilis subsp. subtilis str. 168 BSU28800 -103 5.9 AAAATTGTTCGTACAAATAT
Bacillus amyloliquefaciens FZB42 RBAM_025860 -99 5.8 AAAATTGTTCGTACAAATAA
-57 5.3 ATATTCGTACGTATATTTTT
Bacillus pumilus SAFR-032 BPUM_2327 -102 6.1 ACATATGTACGTACAAATAT
Bacillus licheniformis DSM 13 BLi02064 -138 5 ATATTTATATGAACATATTA
-106 5.8 ACATATGTACGTACAAAAAA
Bacillus licheniformis DSM 13 BLi03028 -155 5.2 GAAGTTGTTCGTACAAATAT
-125 5.7 TTAGTTGTACGTACATATAA
Anoxybacillus flavithermus WK1 Aflv_0531 -54 5.7 AAAAATGTACGTACAAAATT
Geobacillus kaustophilus HTA426 GK1904 -61 5.6 AAAATTGTACGTACAATAGT
Bacillus halodurans C-125 BH1873 -71 5.7 AAAATTGTACGTACAAGTGT
Oceanobacillus iheyensis HTE831 OB2797 -152 5.9 TAATTTGTACGTATATATAT
-119 5.4 ACAAATGTACGTACAATAAT
Paenibacillus sp. JDR-2 Pjdr2_2502 -83 5.6 TAAGTTGTACGTACAACTTA
Position: -105
Score: 5.2
Sequence: TTTTTTGTCTGTACAAATAT
Locus tag: RBAM_025870
RBAM_025870 -105 5.2 TTTTTTGTCTGTACAAATAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: abnA
Ortholog function: Arabinan endo-1,5-alpha-L-arabinosidase (EC 3.2.1.99)
Bacillus subtilis subsp. subtilis str. 168 BSU28810 -159 5.2 TTTTTTGTCTGTACAAATTA
Bacillus amyloliquefaciens FZB42 RBAM_025870 -105 5.2 TTTTTTGTCTGTACAAATAT
Position: -109
Score: 5.6
Sequence: TCATAAGTACGTACAAATGT
Locus tag: RBAM_031320
RBAM_031320 -109 5.6 TCATAAGTACGTACAAATGT
Supported by regulated orthologs from reference regulons
Ortholog gene name: araE
Ortholog function: L-arabinose-proton symporter
Bacillus subtilis subsp. subtilis str. 168 BSU33960 -190 5.3 AAATGTATACGGACAAATTT
-109 6 ATATTTGTACGTACTAATTA
-66 5.5 ATATAAGTACGTACAATTGA
Bacillus amyloliquefaciens FZB42 RBAM_031320 -152 5.4 TTATTTGTGCGTACTAATTT
-109 5.6 TCATAAGTACGTACAAATGT
Position: -167
Score: 5.6
Sequence: ACATTTGTACGTACTTATGA
Position: -124
Score: 5.4
Sequence: AAATTAGTACGCACAAATAA
Position: -33
Score: 4.7
Sequence: GAATTTGTCCGTATACATTT
Locus tag: RBAM_031330
RBAM_031330 -167 5.6 ACATTTGTACGTACTTATGA
-124 5.4 AAATTAGTACGCACAAATAA
-33 4.7 GAATTTGTCCGTATACATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: araR
Ortholog function: Transcriptional repressor of arabinoside utilization, GntR family
Bacillus subtilis subsp. subtilis str. 168 BSU33970 -91 5.5 TCAATTGTACGTACTTATAT
-48 6 TAATTAGTACGTACAAATAT
Bacillus amyloliquefaciens FZB42 RBAM_031330 -167 5.6 ACATTTGTACGTACTTATGA
-124 5.4 AAATTAGTACGCACAAATAA
Bacillus pumilus SAFR-032 BPUM_2330 -191 6.1 ATATTTGTACGTACATATGT
Bacillus licheniformis DSM 13 BLi02061 -192 5.8 TTTTTTGTACGTACATATGT
-160 5 TAATATGTTCATATAAATAT
Anoxybacillus flavithermus WK1 Aflv_0528 -81 5.9 AAATATATACGTACAAATAA
Geobacillus kaustophilus HTA426 GK1907 -75 5 ATAATGATACGGACAAATAA
Bacillus halodurans C-125 BH1875 -36 5.2 TCATTTGTACGTATAAGTTG
Oceanobacillus iheyensis HTE831 OB2800 -203 5.4 ATTATTGTACGTACATTTGT
-170 5.9 ATATATATACGTACAAATTA
-63 5.3 AAATATGTACATACAAGTAT
Paenibacillus sp. JDR-2 Pjdr2_4208 -100 4.8 TCACATGTACATACAAGTTA
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