Propagation of AraR regulog to Bacillus amyloliquefaciens FZB42
| Source regulog: | AraR - Bacillales |
| Regulator type: | Transcription factor |
| Regulator family: | GntR/Others |
| Regulation mode: | repressor |
| Biological process: | Arabinose utilization |
| Effector: | Arabinose |
| Phylum: | Firmicutes |
| Propagated regulon: | |
| Target genome | Bacillus amyloliquefaciens FZB42 |
| Orthologous TF(s) | RBAM_031330 |
| Regulated genes | 5 |
| Locus tag | Position | Score | Sequence | |
|---|---|---|---|---|
|
Position: -169
Score: 5.6 Sequence: TAATTGGTTCGTACAAATTA
Locus tag: RBAM_025570
|
||||
| RBAM_025570 | -169 | 5.6 | TAATTGGTTCGTACAAATTA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: xsa | ||||
| Ortholog function: Alpha-N-arabinofuranosidase 2 (EC 3.2.1.55) | ||||
| Bacillus subtilis subsp. subtilis str. 168 | BSU28510 | -173 | 5.5 | AAATACATACGTACAAATAT |
| Bacillus amyloliquefaciens FZB42 | RBAM_025570 | -169 | 5.6 | TAATTGGTTCGTACAAATTA |
| Bacillus halodurans C-125 | BH1874 | -71 | 5.7 | AAAATTGTACGTACAAGTGT |
|
Position: -99
Score: 5.8 Sequence: AAAATTGTTCGTACAAATAA
Locus tag: RBAM_025860
|
||||
| RBAM_025860 | -99 | 5.8 | AAAATTGTTCGTACAAATAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: araA | ||||
| Ortholog function: L-arabinose isomerase (EC 5.3.1.4) | ||||
| Bacillus subtilis subsp. subtilis str. 168 | BSU28800 | -103 | 5.9 | AAAATTGTTCGTACAAATAT |
| Bacillus amyloliquefaciens FZB42 | RBAM_025860 | -99 | 5.8 | AAAATTGTTCGTACAAATAA |
| -57 | 5.3 | ATATTCGTACGTATATTTTT | ||
| Bacillus pumilus SAFR-032 | BPUM_2327 | -102 | 6.1 | ACATATGTACGTACAAATAT |
| Bacillus licheniformis DSM 13 | BLi02064 | -138 | 5 | ATATTTATATGAACATATTA |
| -106 | 5.8 | ACATATGTACGTACAAAAAA | ||
| Bacillus licheniformis DSM 13 | BLi03028 | -155 | 5.2 | GAAGTTGTTCGTACAAATAT |
| -125 | 5.7 | TTAGTTGTACGTACATATAA | ||
| Anoxybacillus flavithermus WK1 | Aflv_0531 | -54 | 5.7 | AAAAATGTACGTACAAAATT |
| Geobacillus kaustophilus HTA426 | GK1904 | -61 | 5.6 | AAAATTGTACGTACAATAGT |
| Bacillus halodurans C-125 | BH1873 | -71 | 5.7 | AAAATTGTACGTACAAGTGT |
| Oceanobacillus iheyensis HTE831 | OB2797 | -152 | 5.9 | TAATTTGTACGTATATATAT |
| -119 | 5.4 | ACAAATGTACGTACAATAAT | ||
| Paenibacillus sp. JDR-2 | Pjdr2_2502 | -83 | 5.6 | TAAGTTGTACGTACAACTTA |
|
Position: -105
Score: 5.2 Sequence: TTTTTTGTCTGTACAAATAT
Locus tag: RBAM_025870
|
||||
| RBAM_025870 | -105 | 5.2 | TTTTTTGTCTGTACAAATAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: abnA | ||||
| Ortholog function: Arabinan endo-1,5-alpha-L-arabinosidase (EC 3.2.1.99) | ||||
| Bacillus subtilis subsp. subtilis str. 168 | BSU28810 | -159 | 5.2 | TTTTTTGTCTGTACAAATTA |
| Bacillus amyloliquefaciens FZB42 | RBAM_025870 | -105 | 5.2 | TTTTTTGTCTGTACAAATAT |
|
Position: -109
Score: 5.6 Sequence: TCATAAGTACGTACAAATGT
Locus tag: RBAM_031320
|
||||
| RBAM_031320 | -109 | 5.6 | TCATAAGTACGTACAAATGT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: araE | ||||
| Ortholog function: L-arabinose-proton symporter | ||||
| Bacillus subtilis subsp. subtilis str. 168 | BSU33960 | -190 | 5.3 | AAATGTATACGGACAAATTT |
| -109 | 6 | ATATTTGTACGTACTAATTA | ||
| -66 | 5.5 | ATATAAGTACGTACAATTGA | ||
| Bacillus amyloliquefaciens FZB42 | RBAM_031320 | -152 | 5.4 | TTATTTGTGCGTACTAATTT |
| -109 | 5.6 | TCATAAGTACGTACAAATGT | ||
|
Position: -167
Score: 5.6 Sequence: ACATTTGTACGTACTTATGA
Position: -124
Score: 5.4 Sequence: AAATTAGTACGCACAAATAA
Position: -33
Score: 4.7 Sequence: GAATTTGTCCGTATACATTT
Locus tag: RBAM_031330
|
||||
| RBAM_031330 | -167 | 5.6 | ACATTTGTACGTACTTATGA | |
| -124 | 5.4 | AAATTAGTACGCACAAATAA | ||
| -33 | 4.7 | GAATTTGTCCGTATACATTT | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: araR | ||||
| Ortholog function: Transcriptional repressor of arabinoside utilization, GntR family | ||||
| Bacillus subtilis subsp. subtilis str. 168 | BSU33970 | -91 | 5.5 | TCAATTGTACGTACTTATAT |
| -48 | 6 | TAATTAGTACGTACAAATAT | ||
| Bacillus amyloliquefaciens FZB42 | RBAM_031330 | -167 | 5.6 | ACATTTGTACGTACTTATGA |
| -124 | 5.4 | AAATTAGTACGCACAAATAA | ||
| Bacillus pumilus SAFR-032 | BPUM_2330 | -191 | 6.1 | ATATTTGTACGTACATATGT |
| Bacillus licheniformis DSM 13 | BLi02061 | -192 | 5.8 | TTTTTTGTACGTACATATGT |
| -160 | 5 | TAATATGTTCATATAAATAT | ||
| Anoxybacillus flavithermus WK1 | Aflv_0528 | -81 | 5.9 | AAATATATACGTACAAATAA |
| Geobacillus kaustophilus HTA426 | GK1907 | -75 | 5 | ATAATGATACGGACAAATAA |
| Bacillus halodurans C-125 | BH1875 | -36 | 5.2 | TCATTTGTACGTATAAGTTG |
| Oceanobacillus iheyensis HTE831 | OB2800 | -203 | 5.4 | ATTATTGTACGTACATTTGT |
| -170 | 5.9 | ATATATATACGTACAAATTA | ||
| -63 | 5.3 | AAATATGTACATACAAGTAT | ||
| Paenibacillus sp. JDR-2 | Pjdr2_4208 | -100 | 4.8 | TCACATGTACATACAAGTTA |