Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of TnrA regulog to Bacillus amyloliquefaciens FZB42

Reference regulog properties
Source regulog: TnrA - Bacillales
Regulator type: Transcription factor
Regulator family: MerR
Regulation mode: repressor (activator)
Biological process: Nitrogen assimilation
Effector: NrgB, ammonium uptake protein; NrgA, ammonium uptake protein; Feedback-inhibited GlnA, glutamine synthetase
Phylum: Firmicutes
Propagated regulon:
Target genome Bacillus amyloliquefaciens FZB42
Orthologous TF(s) RBAM_013130
Regulated genes 47
Built upon 304 sites [see more]
Predicted regulatory interactions in Bacillus amyloliquefaciens FZB42
Locus tag Position Score Sequence
Position: -48
Score: 4.4
Sequence: TATGATAAAATATAACA
Locus tag: RBAM_003080
RBAM_003080 -48 4.4 TATGATAAAATATAACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: rapJ
Ortholog function: Response regulator aspartate phosphatase I (EC 3.1.-.-)
Bacillus subtilis subsp. subtilis str. 168 BSU02820 -48 4.4 TATGATAAAATATAACA
Bacillus amyloliquefaciens FZB42 RBAM_003080 -48 4.4 TATGATAAAATATAACA
Bacillus pumilus SAFR-032 BPUM_1615 -89 3.4 TTATGTAATAACTTACA
Bacillus licheniformis DSM 13 BLi03446 -107 4.1 TGTGAAAAATTATTACT
Position: -84
Score: 4.9
Sequence: TGTTACATTTCATAACA
Locus tag: RBAM_003510
RBAM_003510 -84 4.9 TGTTACATTTCATAACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: nasD
Ortholog function: Nitrite reductase [NAD(P)H] large subunit (EC 1.7.1.4)
Bacillus subtilis subsp. subtilis str. 168 BSU03300 -95 4.1 TCGTATATTTTGTTACA
-85 5.3 TGTTACATTTTATAACA
Bacillus amyloliquefaciens FZB42 RBAM_003510 -84 4.9 TGTTACATTTCATAACA
Bacillus licheniformis DSM 13 BLi00484 -87 5 TGTCAGGAAATGTAACA
Geobacillus kaustophilus HTA426 GK1868 -286 4.6 TGTGATAAAAAGTTACA
-202 5.2 TGTTATATAAACTGACA
Bacillus halodurans C-125 BH0613 -80 4.6 TGTAAGATATCCTCCCA
Bacillus clausii KSM-K16 ABC1621 -89 5.2 TGTCACAAAATATTACA
Position: -100
Score: 4.8
Sequence: TGTAAGATAATGCGACA
Locus tag: RBAM_003530
RBAM_003530 -100 4.8 TGTAAGATAATGCGACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: nasB
Ortholog function: Nitrite reductase [NAD(P)H] large subunit (EC 1.7.1.4)
Bacillus subtilis subsp. subtilis str. 168 BSU03320 -98 4.9 TGTAAGTTTTTGTGACA
Bacillus amyloliquefaciens FZB42 RBAM_003530 -100 4.8 TGTAAGATAATGCGACA
Bacillus licheniformis DSM 13 BLi00482 -87 5 TGTCAGGAAATGTAACA
Bacillus clausii KSM-K16 ABC1623 -89 5.2 TGTCACAAAATATTACA
Paenibacillus sp. JDR-2 Pjdr2_2175 -223 4 TGTCAATAAACTTAACA
-159 4 TGTGACCTATATTGACA
Position: -97
Score: 4.8
Sequence: TGTCGCATTATCTTACA
Locus tag: RBAM_003540
RBAM_003540 -97 4.8 TGTCGCATTATCTTACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: nasA
Ortholog function: Nitrate/nitrite transporter
Bacillus subtilis subsp. subtilis str. 168 BSU03330 -98 4.9 TGTCACAAAAACTTACA
Bacillus amyloliquefaciens FZB42 RBAM_003540 -97 4.8 TGTCGCATTATCTTACA
Bacillus licheniformis DSM 13 BLi00365 -87 4.7 TGTTAGTAAAGCTTACA
Bacillus clausii KSM-K16 ABC1625 -89 5.2 TGTCACAAAATATTACA
Position: -174
Score: 4.9
Sequence: AGTCAGATAATATAACA
Locus tag: RBAM_003840
RBAM_003840 -174 4.9 AGTCAGATAATATAACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: yclF
Ortholog function: Di-tripeptide-proton ABC symporter
Bacillus subtilis subsp. subtilis str. 168 BSU03670 -212 3.6 TCTAAAATTTTATTAAA
-175 4.9 TGTAAGAAAATCTCACG
Bacillus amyloliquefaciens FZB42 RBAM_003840 -211 3.4 CTTTAAATTTTATTAAA
-174 4.9 AGTCAGATAATATAACA
Bacillus pumilus SAFR-032 BPUM_0343 -183 3.8 TTAAATAAATTCTTTCA
-141 3.7 TGAAAGAATTTTTCATA
Bacillus licheniformis DSM 13 BLi00449 -180 3.9 TATTAAAAAATCTTTCA
Geobacillus kaustophilus HTA426 GK2020 -44 3.5 TGAATTATTATATTAAA
Position: -121
Score: 4.9
Sequence: TGTTATATTATCTGACT
Locus tag: RBAM_003850
RBAM_003850 -121 4.9 TGTTATATTATCTGACT
Supported by regulated orthologs from reference regulons
Ortholog gene name: yclG
Ortholog function: Pectate lyase family protein
Bacillus subtilis subsp. subtilis str. 168 BSU03680 -121 4.9 CGTGAGATTTTCTTACA
Bacillus amyloliquefaciens FZB42 RBAM_003850 -121 4.9 TGTTATATTATCTGACT
Bacillus pumilus SAFR-032 BPUM_0344 -73 3.8 TGAAAGAATTTATTTAA
Bacillus licheniformis DSM 13 BLi00451 1 3.9 TGAAAGATTTTTTAATA
Position: -137
Score: 4.9
Sequence: TGGTAGGTTTTCTGACA
Locus tag: RBAM_004280
RBAM_004280 -137 4.9 TGGTAGGTTTTCTGACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: lamB
Ortholog function: Lactam utilization protein LamB
Bacillus subtilis subsp. subtilis str. 168 BSU04050 -145 4.9 TGGTAGGTTTTCTGACA
-52 3.9 CGGGACAATAAATGACA
Bacillus amyloliquefaciens FZB42 RBAM_004280 -137 4.9 TGGTAGGTTTTCTGACA
Bacillus pumilus SAFR-032 BPUM_0379 -113 5.5 TGTTATATTTTCTAACA
Bacillus licheniformis DSM 13 BLi00498 -155 4.6 TGTGAGGTTTCCTAACA
Position: -54
Score: 4.5
Sequence: AGAAAGAAAATCTGACA
Locus tag: RBAM_004400
RBAM_004400 -54 4.5 AGAAAGAAAATCTGACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ydaB
Ortholog function: Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
Bacillus subtilis subsp. subtilis str. 168 BSU04170 -55 4.5 AGGAAGAAAATCTAACA
Bacillus amyloliquefaciens FZB42 RBAM_004400 -54 4.5 AGAAAGAAAATCTGACA
Bacillus pumilus SAFR-032 BPUM_0239 -70 4.5 TGAGATAAAATCTGCCA
Bacillus licheniformis DSM 13 BLi00300 3 4.3 CGTCACATAATCTCACC
Position: -100
Score: 5.4
Sequence: TGTCATATTTTCTTACA
Locus tag: RBAM_006710
RBAM_006710 -100 5.4 TGTCATATTTTCTTACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: gabP
Ortholog function: Gamma-aminobutyrate (GABA) permease
Bacillus subtilis subsp. subtilis str. 168 BSU06310 -103 5.1 TGGTATATTTTCTTACA
Bacillus amyloliquefaciens FZB42 RBAM_006710 -100 5.4 TGTCATATTTTCTTACA
Position: -40
Score: 4.4
Sequence: TGTAATAAATTGGAACA
Locus tag: RBAM_007720
RBAM_007720 -40 4.4 TGTAATAAATTGGAACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: pel
Ortholog function: Pectate lyase precursor (EC 4.2.2.2)
Bacillus subtilis subsp. subtilis str. 168 BSU07560 -43 4.9 TGGAATAAAATCTCACA
Bacillus amyloliquefaciens FZB42 RBAM_007720 -40 4.4 TGTAATAAATTGGAACA
Bacillus licheniformis DSM 13 BLi01404 -114 4.6 TGTCATAAAATTTGAAA
Position: -38
Score: 4.7
Sequence: TGTTAAATAATTTCACA
Locus tag: RBAM_011190
RBAM_011190 -38 4.7 TGTTAAATAATTTCACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: argC
Ortholog function: N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38)
Bacillus subtilis subsp. subtilis str. 168 BSU11190 -40 4.7 TGTTAAATAATTTCACA
16 4.2 TGTTAGAAGATGGGACA
Bacillus amyloliquefaciens FZB42 RBAM_011190 -38 4.7 TGTTAAATAATTTCACA
Bacillus pumilus SAFR-032 BPUM_1042 -34 4.7 TGTTAAATAATTTCACA
Bacillus licheniformis DSM 13 BLi01206 -40 4.7 TGTTAAATAATTTCACA
Position: -101
Score: 4.1
Sequence: TGTAATAATATACAACT
Locus tag: RBAM_011360
RBAM_011360 -101 4.1 TGTAATAATATACAACT
Supported by regulated orthologs from reference regulons
Ortholog gene name: appD
Ortholog function: Oligopeptide ABC transporter (ATP-binding protein)
Bacillus subtilis subsp. subtilis str. 168 BSU11360 -119 4.1 TGTAATAATATACAACT
Bacillus amyloliquefaciens FZB42 RBAM_011360 -101 4.1 TGTAATAATATACAACT
Bacillus clausii KSM-K16 ABC2416 -111 4.2 TGTGAGAAAATCTATTA
Oceanobacillus iheyensis HTE831 OB2264 -146 4.4 TGTCGAATTTTGTAACA
Position: -231
Score: 4.3
Sequence: TGACAGAAAAACTGACC
Locus tag: RBAM_011430
RBAM_011430 -231 4.3 TGACAGAAAAACTGACC
Supported by regulated orthologs from reference regulons
Ortholog gene name: oppA
Ortholog function: Oligopeptide ABC transporter (binding lipoprotein)
Bacillus subtilis subsp. subtilis str. 168 BSU11430 -231 4.3 TGGAAGAAAAACTAACG
Bacillus amyloliquefaciens FZB42 RBAM_011430 -231 4.3 TGACAGAAAAACTGACC
Bacillus licheniformis DSM 13 BLi01232 -249 4.9 TGGCAGAAAACCTGACA
Position: -86
Score: 4.4
Sequence: GGTTAGATATTCTCTCA
Locus tag: RBAM_012870
RBAM_012870 -86 4.4 GGTTAGATATTCTCTCA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ykgA
Ortholog function: Arginine deiminase (EC 3.5.3.6)
Bacillus amyloliquefaciens FZB42 RBAM_012870 -86 4.4 GGTTAGATATTCTCTCA
-63 3.7 TTTCATTATTCATCACA
Bacillus pumilus SAFR-032 BPUM_1193 -82 4.1 TGAGAGATTTTCTATCG
Bacillus licheniformis DSM 13 BLi01401 -84 4.3 TGTCAGATTTTCTGGCT
Position: -81
Score: 4.8
Sequence: CGTCAGAAAACCTGACA
Locus tag: RBAM_013130
RBAM_013130 -81 4.8 CGTCAGAAAACCTGACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: tnrA
Ortholog function: Transcriptional regulator of nitrogen assimilation, MerR family
Bacillus subtilis subsp. subtilis str. 168 BSU13310 -124 3.9 TGTTAATTTTTCTTCCG
-81 5.5 TGTTAGAAAATATGACA
Bacillus amyloliquefaciens FZB42 RBAM_013130 -124 4.1 TGTCAATTTTTCTGCCG
-81 4.8 CGTCAGAAAACCTGACA
Bacillus pumilus SAFR-032 BPUM_1230 -121 4 TGTCAACTTTCCTTCCA
-80 5.5 TGTTATATTTTCTAACA
Bacillus licheniformis DSM 13 BLi01490 -124 3.8 TGTAAACTTTTCTTCCG
-81 5.6 TGTTAGATTTTCTGACA
Anoxybacillus flavithermus WK1 Aflv_1544 -113 4.9 TGTTACTTTTTATAACA
-82 4.9 TGTTACTTTTTATAACA
-27 5.4 TGTTATAAAATATGACA
Geobacillus kaustophilus HTA426 GK1860 -86 3.9 TGTTAATTTTATTTACA
-33 4.6 CGTTAGAAAATATAACG
Bacillus halodurans C-125 BH1494 -110 5.5 TGTAAGAAAATCTAACA
Bacillus clausii KSM-K16 ABC1760 -99 5.5 TGTTAGATTTTCTTACA
-57 5 TGTGATATATTGTTACA
Oceanobacillus iheyensis HTE831 OB1650 -80 5.1 TGTTAGAAATACTAACA
-57 4.3 TGACATATAAGCTGACG
Paenibacillus sp. JDR-2 Pjdr2_5154 -302 5.7 TGTTAGATAATCTAACA
-41 5 TGTTAGAAAACATTACA
Position: -130
Score: 4.8
Sequence: TGTCAGGTTTTCTGACG
Locus tag: RBAM_013140
RBAM_013140 -130 4.8 TGTCAGGTTTTCTGACG
Supported by regulated orthologs from reference regulons
Ortholog gene name: ykzB
Ortholog function: Hypothetical protein
Bacillus subtilis subsp. subtilis str. 168 BSU13320 -130 5.5 TGTCATATTTTCTAACA
-87 3.9 CGGAAGAAAAATTAACA
Bacillus amyloliquefaciens FZB42 RBAM_013140 -130 4.8 TGTCAGGTTTTCTGACG
-87 4.1 CGGCAGAAAAATTGACA
Anoxybacillus flavithermus WK1 Aflv_1546 -172 5.4 TGTCATATTTTATAACA
-117 4.9 TGTTATAAAAAGTAACA
-86 4.9 TGTTATAAAAAGTAACA
Geobacillus kaustophilus HTA426 GK1862 -176 4.6 CGTTATATTTTCTAACG
-123 3.9 TGTAAATAAAATTAACA
Position: -59
Score: 4.9
Sequence: TGACACAAAATATAACA
Locus tag: RBAM_017250
RBAM_017250 -59 4.9 TGACACAAAATATAACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: glnR
Ortholog function: Transcriptional regulator of nitrogen excess response, MerR family
Bacillus subtilis subsp. subtilis str. 168 BSU17450 -82 4.3 TGTTAAGAATCCTTACA
-59 5 TGACACATAATATAACA
Bacillus amyloliquefaciens FZB42 RBAM_017250 -82 4.3 TGTTAAGATTCCTTACA
-59 4.9 TGACACAAAATATAACA
Bacillus pumilus SAFR-032 BPUM_1636 -82 4.4 TGTTAATATTCCTAACA
-59 5.1 TGACATATAATATAACA
-54 4.2 TATAATATAACATGACA
Bacillus licheniformis DSM 13 BLi01992 -81 4.2 TGTAAAGAATCCTTACA
-58 5 TGACACATTATATAACA
Anoxybacillus flavithermus WK1 Aflv_1508 -82 4.7 TGTGATAAAATGTAACG
-59 4.3 TGACATATAAGTTAACA
Position: -64
Score: 4.8
Sequence: TGTTAAAAGATCTAACA
Locus tag: RBAM_017940
RBAM_017940 -64 4.8 TGTTAAAAGATCTAACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: alsT
Ortholog function: Sodium/alanine symporter family protein
Bacillus subtilis subsp. subtilis str. 168 BSU18120 -240 3.9 GGGAAGAAATGATTACA
-61 5.2 TGTTAAAAAATCTAACA
Bacillus amyloliquefaciens FZB42 RBAM_017940 -64 4.8 TGTTAAAAGATCTAACA
Bacillus licheniformis DSM 13 BLi02069 -51 4.8 TGTTAGAAAACTTAACA
Bacillus halodurans C-125 BH1772 -191 3.9 TGTCATTTAATGCATCA
Position: -52
Score: 5
Sequence: TGTCAGATTTTATGACC
Locus tag: RBAM_018620
RBAM_018620 -52 5 TGTCAGATTTTATGACC
Supported by regulated orthologs from reference regulons
Ortholog gene name: gltA
Ortholog function: Glutamate synthase [NADPH] large chain (EC 1.4.1.13)
Bacillus subtilis subsp. subtilis str. 168 BSU18450 -51 5 TGTTAGATTTTATGACC
Bacillus amyloliquefaciens FZB42 RBAM_018620 -52 5 TGTCAGATTTTATGACC
Bacillus pumilus SAFR-032 BPUM_1814 -54 4.6 TGTGAGATTTTATTACT
Bacillus licheniformis DSM 13 BLi02162 -54 4.9 TGTAAGATTTTATGACC
Position: -110
Score: 5
Sequence: GGTCATAAAATCTGACA
Locus tag: RBAM_018630
RBAM_018630 -110 5 GGTCATAAAATCTGACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: gltC
Ortholog function: Transcriptional regulator of glutamate biosynthesis (LysR family)
Bacillus subtilis subsp. subtilis str. 168 BSU18460 -112 5 GGTCATAAAATCTAACA
Bacillus amyloliquefaciens FZB42 RBAM_018630 -110 5 GGTCATAAAATCTGACA
Bacillus pumilus SAFR-032 BPUM_1815 -116 4.6 AGTAATAAAATCTCACA
Bacillus licheniformis DSM 13 BLi02163 -111 4.9 GGTCATAAAATCTTACA
Position: -261
Score: 4.9
Sequence: TGTGATCTTATCTGACA
Locus tag: RBAM_019340
RBAM_019340 -261 4.9 TGTGATCTTATCTGACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: yodF
Ortholog function: Na+/solute symporter
Bacillus subtilis subsp. subtilis str. 168 BSU19580 -61 4.8 TGTGATCTTTTCTTACA
Bacillus amyloliquefaciens FZB42 RBAM_019340 -261 4.9 TGTGATCTTATCTGACA
Bacillus pumilus SAFR-032 BPUM_1878 -59 4.9 TGTGATCTAATCTGACA
1 4 TGCAAGGAAATTTGACA
Bacillus licheniformis DSM 13 BLi02278 -62 4.9 TGTGATTAAATCTGACA
Position: -310
Score: 4.9
Sequence: TGTGAGATTACCTCACA
Locus tag: RBAM_023580
RBAM_023580 -310 4.9 TGTGAGATTACCTCACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: recO
Ortholog function: DNA recombination and repair protein RecO
Bacillus subtilis subsp. subtilis str. 168 BSU25280 -135 4.3 TGTGTCATTATCTCACA
Bacillus amyloliquefaciens FZB42 RBAM_023580 -310 4.9 TGTGAGATTACCTCACA
Bacillus pumilus SAFR-032 BPUM_2260 -134 5.5 TGTCATAAAATCTGACA
Bacillus licheniformis DSM 13 BLi02719 -166 4.1 TGGAATGTATTTTCACA
Geobacillus kaustophilus HTA426 GK2486 -100 4.2 GGTTAGAAAATTTTACG
Bacillus halodurans C-125 BH1369 -216 4.4 TGCAAGAAAATGTCACA
Position: -123
Score: 3.5
Sequence: TATCAGAAATTACGAAA
Locus tag: RBAM_024530
RBAM_024530 -123 3.5 TATCAGAAATTACGAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: glnQ
Ortholog function: Glutamine transport ATP-binding protein GlnQ (TC 3.A.1.3.2)
Bacillus subtilis subsp. subtilis str. 168 BSU27430 -28 4 GGTCAAATTTTCTGATA
Bacillus amyloliquefaciens FZB42 RBAM_024530 -123 3.5 TATCAGAAATTACGAAA
Bacillus pumilus SAFR-032 BPUM_2382 -93 3.8 TGTTAAAAATGAATACA
Bacillus clausii KSM-K16 ABC0770 -8 3.4 GGACAGCAATGATCACA
Paenibacillus sp. JDR-2 Pjdr2_2874 -63 4.7 TGTTATCTAACCTAACA
Position: -76
Score: 4.8
Sequence: TGTTACATATTCTGACT
Locus tag: RBAM_029140
RBAM_029140 -76 4.8 TGTTACATATTCTGACT
Supported by regulated orthologs from reference regulons
Ortholog gene name: yuiA
Ortholog function: Uncharacterized conserved protein contain two CXXC motifs
Bacillus subtilis subsp. subtilis str. 168 BSU32090 -78 4.4 TGTCACATGATCTGACT
Bacillus amyloliquefaciens FZB42 RBAM_029140 -76 4.8 TGTTACATATTCTGACT
Bacillus halodurans C-125 BH3406 -86 4.1 TGTGAGAATACCTCGCA
Position: -42
Score: 4.9
Sequence: TGTTATAATTAATAACA
Locus tag: RBAM_029160
RBAM_029160 -42 4.9 TGTTATAATTAATAACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: yumC
Ortholog function: Thioredoxin reductase (EC 1.8.1.9)
Bacillus subtilis subsp. subtilis str. 168 BSU32110 -43 4.6 TGGTATAATTAATAACA
Bacillus amyloliquefaciens FZB42 RBAM_029160 -229 3.9 TGAAATGAAATATAAAA
-42 4.9 TGTTATAATTAATAACA
Bacillus halodurans C-125 BH3408 -277 4.3 TGGCAAAAAAAGTGACA
-125 4.3 TGACAGATTTATTTACA
Position: -50
Score: 4.9
Sequence: TGTGATAAAAACTGACA
Locus tag: RBAM_029500
RBAM_029500 -50 4.9 TGTGATAAAAACTGACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: pucH
Ortholog function: Allantoinase (EC 3.5.2.5)
Bacillus subtilis subsp. subtilis str. 168 BSU32410 -51 5.1 TGTTACATAAACTGACA
Bacillus amyloliquefaciens FZB42 RBAM_029500 -50 4.9 TGTGATAAAAACTGACA
Bacillus halodurans C-125 BH2309 -260 4.5 TGTCATAAAGCCTAACA
-71 4.2 TATCAGAAAATATAAAA
Bacillus clausii KSM-K16 ABC3732 -173 4.2 TGTAAACAATCCTAACA
Bacillus clausii KSM-K16 ABC3732 -173 4.2 TGTAAACAATCCTAACA
Paenibacillus sp. JDR-2 Pjdr2_3313 -179 4.1 TGTGATCTATTGTTACG
-96 4.3 TGTAAGATATATTGACG
Position: -146
Score: 4.9
Sequence: TGTCAGTTTTTATCACA
Locus tag: RBAM_029510
RBAM_029510 -146 4.9 TGTCAGTTTTTATCACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: pucR
Ortholog function: Transcriptional regulator of the purine degradation operon, PucR family
Bacillus subtilis subsp. subtilis str. 168 BSU32420 -140 5.1 TGTCAGTTTATGTAACA
Bacillus amyloliquefaciens FZB42 RBAM_029510 -146 4.9 TGTCAGTTTTTATCACA
Bacillus pumilus SAFR-032 BPUM_2903 -142 4.4 TGTCATGTTAGTTGACA
Bacillus licheniformis DSM 13 BLi03436 -138 4.6 TGTTATATTTCTTTACA
Position: -37
Score: 4.8
Sequence: CGTCAGAAAATTTAACA
Locus tag: RBAM_030630
RBAM_030630 -37 4.8 CGTCAGAAAATTTAACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: yvgT
Ortholog function: Hypothetical membrane protein
Bacillus subtilis subsp. subtilis str. 168 BSU33460 -39 4.8 CGTCAGAAAATTTAACA
Bacillus amyloliquefaciens FZB42 RBAM_030630 -37 4.8 CGTCAGAAAATTTAACA
Position: -129
Score: 3.9
Sequence: AGTTATATTTTATCACT
Locus tag: RBAM_032200
RBAM_032200 -129 3.9 AGTTATATTTTATCACT
Supported by regulated orthologs from reference regulons
Ortholog gene name: nagA
Ortholog function: N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25)
Bacillus amyloliquefaciens FZB42 RBAM_032200 -129 3.9 AGTTATATTTTATCACT
Bacillus licheniformis DSM 13 BLi04348 -147 4.8 TGGAATATAACCTGACA
Bacillus halodurans C-125 BH0421 -178 4.6 TGTTAGTAGATATAACA
Position: -26
Score: 3.6
Sequence: TGTAAGATAAAGAAAAA
Locus tag: RBAM_032990
RBAM_032990 -26 3.6 TGTAAGATAAAGAAAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: yttA
Ortholog function: Hypothetical protein
Bacillus amyloliquefaciens FZB42 RBAM_032990 -26 3.6 TGTAAGATAAAGAAAAA
Position: -78
Score: 4.9
Sequence: TGTGAGATTTTCTTTCA
Locus tag: RBAM_033270
RBAM_033270 -78 4.9 TGTGAGATTTTCTTTCA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ywrD
Ortholog function: Gamma-glutamyltranspeptidase (EC 2.3.2.2)
Bacillus subtilis subsp. subtilis str. 168 BSU36100 -83 4 CGTCAGTTTTTCTGCCG
Bacillus amyloliquefaciens FZB42 RBAM_033270 -78 4.9 TGTGAGATTTTCTTTCA
Bacillus licheniformis DSM 13 BLi03850 -167 3.6 TTTTGTAAATTGTATCA
-91 3.8 CGTTAGTTTTTCTTCCC
Paenibacillus sp. JDR-2 Pjdr2_5903 -34 3.6 GGTTAGTAAACCTGACT
Position: -32
Score: 3.9
Sequence: TGTAAGGAAAACGTACA
Locus tag: RBAM_033650
RBAM_033650 -32 3.9 TGTAAGGAAAACGTACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: pucI
Ortholog function: Allantoin permease
Bacillus subtilis subsp. subtilis str. 168 BSU36470 -78 4.3 AGTTATATTAAGTGACA
-66 3.7 TGACATCTAATGTCAAA
-56 4.3 TGTCAAAAAACATAACG
Bacillus amyloliquefaciens FZB42 RBAM_033650 -32 3.9 TGTAAGGAAAACGTACA
Position: -98
Score: 5.2
Sequence: TGTCAGATAACCTTACA
Locus tag: RBAM_033680
RBAM_033680 -98 5.2 TGTCAGATAACCTTACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: nrgA
Ortholog function: Ammonium transporter
Bacillus subtilis subsp. subtilis str. 168 BSU36510 -102 5.2 TGTCAGGAAATCTTACA
Bacillus amyloliquefaciens FZB42 RBAM_033680 -98 5.2 TGTCAGATAACCTTACA
Bacillus licheniformis DSM 13 BLi03888 -103 5.2 TGTAAGGAAATCTGACA
Position: -308
Score: 4.2
Sequence: TGTTATGAGAAATGACA
Locus tag: RBAM_033830
RBAM_033830 -308 4.2 TGTTATGAGAAATGACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ureA
Ortholog function: Urease gamma subunit (EC 3.5.1.5)
Bacillus subtilis subsp. subtilis str. 168 BSU36660 -938 4.5 TGTGAATAAATATAACA
-833 4.6 TGTAAACTTTTATAACA
Bacillus amyloliquefaciens FZB42 RBAM_033830 -308 4.2 TGTTATGAGAAATGACA
-203 3.9 TGTAACCTTTCTTCACA
Bacillus halodurans C-125 BH0252 -165 4.4 CGTTAGAAATCGTTACA
-96 5 TGTAATCTTTTCTAACA
-61 4.5 TGTCATCAAAGATAACA
Position: -131
Score: 4.7
Sequence: TGTCAGAAAATCTGCAA
Locus tag: RBAM_034080
RBAM_034080 -131 4.7 TGTCAGAAAATCTGCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: rpiB
Ortholog function: Ribose 5-phosphate isomerase B (EC 5.3.1.6)
Bacillus subtilis subsp. subtilis str. 168 BSU36920 -154 4.7 TGTCAGAAAATCTGCAA
Bacillus amyloliquefaciens FZB42 RBAM_034080 -131 4.7 TGTCAGAAAATCTGCAA
Position: -92
Score: 4.7
Sequence: CGTCAGAAAAAATAACA
Locus tag: RBAM_035200
RBAM_035200 -92 4.7 CGTCAGAAAAAATAACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ywdI
Ortholog function: Hypothetical protein
Bacillus subtilis subsp. subtilis str. 168 BSU37950 -53 5.1 TGTCAGAAAAAATAACA
Bacillus amyloliquefaciens FZB42 RBAM_035200 -92 4.7 CGTCAGAAAAAATAACA
Position: -85
Score: 4.3
Sequence: TGTCACATTTCCGGACA
Locus tag: RBAM_035380
RBAM_035380 -85 4.3 TGTCACATTTCCGGACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ysnE
Ortholog function: GNAT family acetyltransferase
Bacillus subtilis subsp. subtilis str. 168 BSU28330 -141 5.1 TGGAAGATTTTATAACA
-97 4 TGACAGATCATCTTGCA
Bacillus amyloliquefaciens FZB42 RBAM_035380 -210 4.1 TTGAACATTTTGTTACA
-85 4.3 TGTCACATTTCCGGACA
Bacillus pumilus SAFR-032 BPUM_3242 -64 4.3 TGTTCGTTTATGTGACA
Bacillus halodurans C-125 BH1073 -87 5.1 CGTCATAAAATCTAACA
Position: -234
Score: 3.3
Sequence: TTTTTGTATATCTTTCA
Position: -68
Score: 3.3
Sequence: CTATAGGTTATTTTACA
Locus tag: RBAM_036070
RBAM_036070 -234 3.3 TTTTTGTATATCTTTCA
-68 3.3 CTATAGGTTATTTTACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: yxkC
Ortholog function: Hypothetical protein
Bacillus subtilis subsp. subtilis str. 168 BSU38850 -117 3.6 TGTAACTATAAATGATA
-31 4.1 TCGTACATTTTATTACA
Bacillus amyloliquefaciens FZB42 RBAM_036070 -68 3.3 CTATAGGTTATTTTACA
Position: -64
Score: 4.1
Sequence: TGTCATATCCTCTTACG
Locus tag: RBAM_037500
RBAM_037500 -64 4.1 TGTCATATCCTCTTACG
Supported by regulated orthologs from reference regulons
Ortholog gene name: yycC
Ortholog function: Hypothetical protein
Bacillus subtilis subsp. subtilis str. 168 BSU40470 -66 4.6 TGTGACATCTTCTTACA
Bacillus amyloliquefaciens FZB42 RBAM_037500 -64 4.1 TGTCATATCCTCTTACG
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