Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
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Propagation of Fnr regulog to Bacillus amyloliquefaciens FZB42

Reference regulog properties
Source regulog: Fnr - Bacillales
Regulator type: Transcription factor
Regulator family: CRP
Regulation mode: activator
Biological process: Anaerobic metabolism
Effector: Oxygen
Phylum: Firmicutes
Propagated regulon:
Target genome Bacillus amyloliquefaciens FZB42
Orthologous TF(s) RBAM_034460
Regulated genes 4
Built upon 39 sites [see more]
Predicted regulatory interactions in Bacillus amyloliquefaciens FZB42
Locus tag Position Score Sequence
Position: -80
Score: 5.4
Sequence: TGTGAAGTATTGCACA
Position: -57
Score: 6
Sequence: TGTGAAATACTTCACA
Locus tag: RBAM_003290
RBAM_003290 -80 5.4 TGTGAAGTATTGCACA
-57 6 TGTGAAATACTTCACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ldh
Ortholog function: L-lactate dehydrogenase (EC 1.1.1.27)
Bacillus subtilis subsp. subtilis str. 168 BSU03050 -83 4.7 TGTGAAGTGTTGCACA
-60 6 TGTGAAATACTTCACA
Bacillus amyloliquefaciens FZB42 RBAM_003290 -80 5.4 TGTGAAGTATTGCACA
-57 6 TGTGAAATACTTCACA
Bacillus pumilus SAFR-032 BPUM_0277 -77 5.4 TGTGAAGTATTGCACA
-54 6 TGTGAAATACTTCACA
Bacillus licheniformis DSM 13 BLi00366 -80 5.4 TGTGAAGTATTGCACA
-57 5.4 TGTGAAGAATTTCACA
Geobacillus kaustophilus HTA426 GK0475 -40 4.9 TGTGAATATATTCACA
Bacillus halodurans C-125 BH3937 -274 6 TGTGAAATATTTCACA
-217 6 TGTGAAATATTTCACA
-42 4.8 TGTGAAAATATTCACA
Bacillus clausii KSM-K16 ABC2872 -66 5.4 TGTGAAATAATGCACA
-43 5.4 TGTGAATAATTTCACA
Oceanobacillus iheyensis HTE831 OB3279 -66 6 TGTGAAATATTTCACA
Position: -81
Score: 5.8
Sequence: TGTGACATAGTTCACA
Locus tag: RBAM_034430
RBAM_034430 -81 5.8 TGTGACATAGTTCACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: narG
Ortholog function: Respiratory nitrate reductase alpha chain (EC 1.7.99.4)
Bacillus subtilis subsp. subtilis str. 168 BSU37280 -81 5.8 TGTGACATAGTTCACA
Bacillus amyloliquefaciens FZB42 RBAM_034430 -81 5.8 TGTGACATAGTTCACA
Bacillus licheniformis DSM 13 BLi02074 -322 5.8 TGTGATGTACGTCACA
Position: -73
Score: 5.6
Sequence: TGTGAAATACATCACT
Locus tag: RBAM_034440
RBAM_034440 -73 5.6 TGTGAAATACATCACT
Supported by regulated orthologs from reference regulons
Ortholog gene name: arfM
Ortholog function: Anaerobic respiration and fermentation modulator
Bacillus amyloliquefaciens FZB42 RBAM_034440 -73 5.6 TGTGAAATACATCACT
Position: -79
Score: 6
Sequence: TGTGATGTAATTCACA
Locus tag: RBAM_034470
RBAM_034470 -79 6 TGTGATGTAATTCACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: narK
Ortholog function: Nitrate/nitrite transporter
Bacillus subtilis subsp. subtilis str. 168 BSU37320 -80 6 TGTGATGTAATTCACA
Bacillus amyloliquefaciens FZB42 RBAM_034470 -79 6 TGTGATGTAATTCACA
Bacillus licheniformis DSM 13 BLi02081 -95 6 TGTGACGTAATTCACA
Geobacillus kaustophilus HTA426 GK0766 -68 4.7 TGTGATCAACCTCACA
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