Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
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Propagation of SinR regulog to Bacillus amyloliquefaciens FZB42

Reference regulog properties
Source regulog: SinR - Bacillales
Regulator type: Transcription factor
Regulator family: XRE
Regulation mode: repressor
Biological process: Biofilm formation
Effector: SinI, antirepressor protein
Phylum: Firmicutes
Propagated regulon:
Target genome Bacillus amyloliquefaciens FZB42
Orthologous TF(s) RBAM_022930
Regulated genes 3
Built upon 15 sites [see more]
Predicted regulatory interactions in Bacillus amyloliquefaciens FZB42
Locus tag Position Score Sequence
Position: -55
Score: 6.1
Sequence: GTTCTTTAAAGAGAAC
Locus tag: RBAM_022960
RBAM_022960 -55 6.1 GTTCTTTAAAGAGAAC
Supported by regulated orthologs from reference regulons
Ortholog gene name: yqxM
Ortholog function: Lipoprotein for biofilm formation
Bacillus amyloliquefaciens FZB42 RBAM_022960 -55 6.1 GTTCTTTAAAGAGAAC
Bacillus halodurans C-125 BH2131 -131 5.7 GTTCTTTATAAAAAAC
Bacillus licheniformis DSM 13 BLi02639 -55 5.9 GTTCTTTAAAACGAAC
Bacillus pumilus SAFR-032 BPUM_2196 -41 6.3 GTTCTTTTTAAAGAAC
Bacillus subtilis subsp. subtilis str. 168 BSU24640 -57 6.1 GTTCTTTAAAGAGAAC
Position: -125
Score: 6.3
Sequence: GTTCTTTAAAAAGAAC
Locus tag: RBAM_031670
RBAM_031670 -125 6.3 GTTCTTTAAAAAGAAC
Supported by regulated orthologs from reference regulons
Ortholog gene name: epsA
Ortholog function: Possible capsular polysaccharide biosynthesis protein
Bacillus amyloliquefaciens FZB42 RBAM_031670 -125 6.3 GTTCTTTAAAAAGAAC
Bacillus licheniformis DSM 13 BLi03694 -106 6.1 GTTCTCTAAAAAGAAC
Bacillus pumilus SAFR-032 BPUM_3083 -125 6.3 GTTCTTTAAAAAGAAC
Bacillus subtilis subsp. subtilis str. 168 BSU34370 -127 6 GTTCTCTAAAGAGAAC
Position: -135
Score: 6.3
Sequence: GTTCTTTTTAAAGAAC
Locus tag: RBAM_031680
RBAM_031680 -135 6.3 GTTCTTTTTAAAGAAC
Supported by regulated orthologs from reference regulons
Ortholog gene name: slr
Ortholog function: Transcriptional repressor of cell separation and motility/antirepressor of SinR
Bacillus amyloliquefaciens FZB42 RBAM_031680 -135 6.3 GTTCTTTTTAAAGAAC
Bacillus pumilus SAFR-032 BPUM_3084 -148 6.3 GTTCTTTTTAAAGAAC
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