Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of YodB/CatR regulog to Bacillus amyloliquefaciens FZB42

Reference regulog properties
Source regulog: YodB/CatR - Bacillales
Regulator type: Transcription factor
Regulator family: HxlR
Regulation mode: repressor
Biological process: Oxidative stress response
Effector: Diamide; Quinone
Phylum: Firmicutes
Propagated regulon:
Target genome Bacillus amyloliquefaciens FZB42
Orthologous TF(s) RBAM_019300, RBAM_030960
Regulated genes 4
Built upon 42 sites [see more]
Predicted regulatory interactions in Bacillus amyloliquefaciens FZB42
Locus tag Position Score Sequence
Position: -42
Score: 5.5
Sequence: GCTTACATAAAGTAAGT
Locus tag: RBAM_008420
RBAM_008420 -42 5.5 GCTTACATAAAGTAAGT
Supported by regulated orthologs from reference regulons
Ortholog gene name: catD
Ortholog function: Catechol-2,3-dioxygenase membrane subunit
Bacillus amyloliquefaciens FZB42 RBAM_008420 -42 5.5 GCTTACATAAAGTAAGT
Bacillus licheniformis DSM 13 BLi00861 -133 5.2 ACTTACACAAAGTAAGT
Bacillus subtilis subsp. subtilis str. 168 BSU08230 -42 5.5 GCTTACATTAAGTAAGT
Position: -105
Score: 4.6
Sequence: ACTTACTTTTTTATAGT
Locus tag: RBAM_011500
RBAM_011500 -105 4.6 ACTTACTTTTTTATAGT
Supported by regulated orthologs from reference regulons
Ortholog gene name: spxA
Ortholog function: RNA polymerase-binding transcriptional regulator of oxidative stress response
Bacillus amyloliquefaciens FZB42 RBAM_011500 -105 4.6 ACTTACTTTTTTATAGT
Bacillus cereus ATCC 14579 BC1188 -165 4.7 AGTTACTTATTAAAAGT
Bacillus licheniformis DSM 13 BLi01238 -104 4.6 ACTTACTTTTTTATAGT
Bacillus pumilus SAFR-032 BPUM_1077 -106 4.6 ACTTACTTTTTTATAGT
Bacillus subtilis subsp. subtilis str. 168 BSU11500 -106 4.6 ACTTACTTTTTTATAGT
Position: -80
Score: 5.3
Sequence: GCTTACTAAATGTAACT
Locus tag: RBAM_019300
RBAM_019300 -80 5.3 GCTTACTAAATGTAACT
Supported by regulated orthologs from reference regulons
Ortholog gene name: yodB
Ortholog function: Transcriptional regulator of oxidative stress, HxlR family
Anoxybacillus flavithermus WK1 Aflv_1958 -78 5 ACTTACTTTTTATTAGT
-41 4.6 AGTTACAATAAGTTTGT
Bacillus amyloliquefaciens FZB42 RBAM_019300 -80 5.3 GCTTACTAAATGTAACT
Bacillus cereus ATCC 14579 BC5197 -49 4.1 ACTTACTTTTTACAAGA
Bacillus licheniformis DSM 13 BLi02274 -90 5.5 ACTTACTTTTTGTAACT
Bacillus pumilus SAFR-032 BPUM_1875 -81 5.5 ACTTACTTATTGTAACT
Bacillus subtilis subsp. subtilis str. 168 BSU19540 -80 5.3 GCTTACTAAATGTAACT
Paenibacillus sp. JDR-2 Pjdr2_4807 -134 4.2 ACTTACTTTAGTCAAGT
Position: -63
Score: 5.3
Sequence: AGTTACATTTAGTAAGC
Locus tag: RBAM_019310
RBAM_019310 -63 5.3 AGTTACATTTAGTAAGC
Supported by regulated orthologs from reference regulons
Ortholog gene name: yodC
Ortholog function: Putative NAD(P)H nitroreductase
Anoxybacillus flavithermus WK1 Aflv_1959 -68 4.6 ACAAACTTATTGTAACT
-31 5 ACTAATAAAAAGTAAGT
Bacillus amyloliquefaciens FZB42 RBAM_019310 -63 5.3 AGTTACATTTAGTAAGC
Bacillus cereus ATCC 14579 BC4045 -69 5.7 ACTTACAAAATGTAAGT
Bacillus halodurans C-125 BH2236 -63 4.4 ACTTTACTTTTGTAAGT
Bacillus licheniformis DSM 13 BLi02275 -73 5.5 AGTTACAAAAAGTAAGT
Bacillus pumilus SAFR-032 BPUM_1876 -75 5.5 AGTTACAATAAGTAAGT
Bacillus subtilis subsp. subtilis str. 168 BSU19550 -66 5.3 AGTTACATTTAGTAAGC
© 2009-2020 RegPrecise