Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
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Propagation of FadR regulog to Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701

Reference regulog properties
Source regulog: FadR - Enterobacteriales
Regulator type: Transcription factor
Regulator family: GntR/Others
Regulation mode: activator (repressor)
Biological process: Fatty acid degradation
Effector: Palmitoyl-CoA; Oleoyl-CoA
Phylum: Proteobacteria/gamma
Propagated regulon:
Target genome Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701
Orthologous TF(s) Sententer_010100017500
Regulated genes 8
Built upon 130 sites [see more]
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Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

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© 2009-2020 RegPrecise
Predicted regulatory interactions in Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701
Locus tag Position Score Sequence
Position: -46
Score: 4.9
Sequence: AACTCATCCGACCACAT
Locus tag: Sententer_010100002190
Sententer_010100002190 -46 4.9 AACTCATCCGACCACAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: fadH
Ortholog function: 2,4-dienoyl-CoA reductase [NADPH] (EC 1.3.1.34)
Escherichia coli str. K-12 substr. MG1655 b3081 -46 4.9 AACTCATCCGACCACAT
Salmonella typhimurium LT2 STM3219 -46 4.9 AACTCATCCGACCACAT
Citrobacter koseri ATCC BAA-895 CKO_04487 -46 4.9 AACTCATCCGACCACAT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_03510 -44 4.9 AACTCATCCGACCACAT
Enterobacter sp. 638 Ent638_3539 -44 4.9 AACTCATCCGACCACAT
Erwinia amylovora ATCC 49946 EAM_0507 -31 5 AACTCATCCGACCACTT
Yersinia pestis KIM y3589 -57 4.9 ATCTCATCCGACCACTT
Serratia proteamaculans 568 Spro_4309 -61 4.9 ATCTCATCCGACCACTT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA0655 -36 4.4 GACTCATCAGACCAGTT
Proteus mirabilis HI4320 PMI3702 -32 4.7 ATCTCATCTGACCAGTA
Photorhabdus luminescens subsp. laumondii TTO1 plu3990 -89 4.7 CACTCATCCGACCACTT
Position: -70
Score: 3.9
Sequence: TAGAGGTCATACCAGTT
Locus tag: Sententer_010100003288
Sententer_010100003288 -70 3.9 TAGAGGTCATACCAGTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: fadM
Ortholog function: Long-chain acyl-CoA thioesterase FadM (EC=3.1.2.-)
Escherichia coli str. K-12 substr. MG1655 b0443 -59 4.5 AAGAGGTCATACCAGTT
Salmonella typhimurium LT2 STM0454 -70 3.9 TAGAGGTCATACCAGTT
Citrobacter koseri ATCC BAA-895 CKO_02717 -59 4.4 ATGAGGTCATACCAGTT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_00405 -54 4.3 AAGTGGTGTGACCTCTT
Enterobacter sp. 638 Ent638_0910 -58 4.1 AAGAGGTCATACCAGTC
Yersinia pestis KIM y1033 -49 3.8 TTGAGGTCCTACCAGTT
Serratia proteamaculans 568 Spro_1101 -97 4.3 TACAGGTCTTACCAGTT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA1154 -44 4.4 ATCAGGTCGTACCAGTT
Position: -85
Score: 4.6
Sequence: CACTCATCCGATCAGTT
Locus tag: Sententer_010100007981
Sententer_010100007981 -85 4.6 CACTCATCCGATCAGTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: iclR
Ortholog function: Acetate operon transcriptional repressor, IclR family
Salmonella typhimurium LT2 STM4187 -85 4.6 CACTCATCCGATCAGTT
Position: -84
Score: 3.3
Sequence: GGCTGATCGGACTTGTT
Locus tag: Sententer_010100016554
Sententer_010100016554 -84 3.3 GGCTGATCGGACTTGTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: fabB
Ortholog function: 3-oxoacyl-(acyl carrier protein) synthase
Escherichia coli str. K-12 substr. MG1655 b2323 -83 3.3 GGCTGATCGGACTTGTT
Salmonella typhimurium LT2 STM2378 -84 3.3 GGCTGATCGGACTTGTT
Citrobacter koseri ATCC BAA-895 CKO_00462 -83 3.3 GGCTGATCGGACTTGTT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02713 -83 3.8 GTCTGATCGGACTTGTT
Enterobacter sp. 638 Ent638_2871 -82 3.3 GGCTGATCGGACTTGTT
Erwinia amylovora ATCC 49946 EAM_2336 -82 3.9 AGCTGATCGGACTTGTT
Yersinia pestis KIM y1591 -85 3.7 CGCTGATCGGACTTGTT
Serratia proteamaculans 568 Spro_3368 -84 3.7 CGCTGATCGGACTTGTT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA3063 -86 3.3 GGCTGATCGGACTTGTT
Edwardsiella tarda EIB202 ETAE_2421 -126 3.7 ATCTGGTTTTACCAGCG
Proteus mirabilis HI4320 PMI1795 -89 3.3 TCCTGATCGGACTTGTT
Photorhabdus luminescens subsp. laumondii TTO1 plu3184 -96 3.3 TCCTGATCGGACTTGTT
Position: -42
Score: 4.8
Sequence: ATCAGGTCAGACCACTA
Locus tag: Sententer_010100016619
Sententer_010100016619 -42 4.8 ATCAGGTCAGACCACTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: fadI
Ortholog function: FadI component of anaerobic fatty acid oxidation complex
Escherichia coli str. K-12 substr. MG1655 b2342 -43 5.1 ATCAGGTCAGACCACTT
Salmonella typhimurium LT2 STM2389 -42 4.8 ATCAGGTCAGACCACTA
Citrobacter koseri ATCC BAA-895 CKO_00448 -43 5.1 ATCAGGTCAGACCACTT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02724 -44 5.1 ATCAGGTCAGACCACTT
Enterobacter sp. 638 Ent638_2882 -48 5.1 ATCAGGTCAGACCACTT
Yersinia pestis KIM y1579 -66 5 ATCAGGTCAGACCTGTT
Serratia proteamaculans 568 Spro_3379 -56 5 ATCAGGTCAGACCTCTT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA3079 -53 5 ATCAGGTCTGACCTGTT
Proteus mirabilis HI4320 PMI1808 -50 5 ATCAGGTCAGACCTCTT
Photorhabdus luminescens subsp. laumondii TTO1 plu3201 -81 4.7 ATCAGGTCAGACCTGTC
Position: -125
Score: 4.2
Sequence: AGCTGGTCAGACCTATA
Position: -101
Score: 4.4
Sequence: CACTGGTCTGATTTCTA
Locus tag: Sententer_010100016639
Sententer_010100016639 -125 4.2 AGCTGGTCAGACCTATA
-101 4.4 CACTGGTCTGATTTCTA
Supported by regulated orthologs from reference regulons