Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of Fur regulog to Escherichia coli APEC O1

Reference regulog properties
Source regulog: Fur - Enterobacteriales
Regulator type: Transcription factor
Regulator family: FUR
Regulation mode: repressor (activator)
Biological process: Iron homeostasis
Effector: Iron ion, (Fe2+)
Phylum: Proteobacteria/gamma
Propagated regulon:
Target genome Escherichia coli APEC O1
Orthologous TF(s) APECO1_1381
Regulated genes 46
Built upon 656 sites [see more]
Predicted regulatory interactions in Escherichia coli APEC O1
Locus tag Position Score Sequence
Position: -57
Score: 4.7
Sequence: CTTTATAATAATCATTCTC
Position: -51
Score: 4.7
Sequence: AATAATCATTCTCGTTTAC
Locus tag: APECO1_1835
APECO1_1835 -57 4.7 CTTTATAATAATCATTCTC
-51 4.7 AATAATCATTCTCGTTTAC
Supported by regulated orthologs from reference regulons
Ortholog gene name: fhuA
Ortholog function: TonB-dependent siderophore receptor
Escherichia coli str. K-12 substr. MG1655 b0150 -57 4.4 CTTTATAATAATCATTCTC
-51 4.5 AATAATCATTCTCGTTTAC
Salmonella typhimurium LT2 STM0191 -56 4.8 GGTTATAATAATAATTATC
-50 4.8 AATAATAATTATCGTTTAC
Citrobacter koseri ATCC BAA-895 CKO_03218 -57 4 GGTCATAAGAATAATTCTC
-51 4.3 AAGAATAATTCTCGTTTAC
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_00165 -56 4 CGTCATAATAATAATTCTC
-50 4.5 AATAATAATTCTCGTTTAC
Enterobacter sp. 638 Ent638_0690 -58 4.3 GGTCATAATAATAATTCTC
-52 4.5 AATAATAATTCTCGTTTAC
Position: -184
Score: 4.4
Sequence: ATTATTGATAACTATTTGC
Position: -178
Score: 4.2
Sequence: GATAACTATTTGCATTTGC
Locus tag: APECO1_1465
APECO1_1465 -184 4.4 ATTATTGATAACTATTTGC
-178 4.2 GATAACTATTTGCATTTGC
Supported by regulated orthologs from reference regulons
Ortholog gene name: fepA
Ortholog function: TonB-dependent siderophore receptor FepA
Escherichia coli str. K-12 substr. MG1655 b0584 -184 4.1 ATTATTGATAACTATTTGC
-178 4 GATAACTATTTGCATTTGC
Salmonella typhimurium LT2 STM0585 -132 4.1 ATTATTGATAACTATTTGC
-126 4 GATAACTATTTGCATTTGC
Citrobacter koseri ATCC BAA-895 CKO_02579 -246 4.4 GATAACTATTTTCATTTGC
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_00602 -197 4.1 ATTATTGATAACTATTTGC
-191 4 GATAACTATTTGCATTTGC
Enterobacter sp. 638 Ent638_1116 -196 4.4 ATTATTGATAACTATTTTC
-190 4.4 GATAACTATTTTCATTTGC
Position: -25
Score: 4.9
Sequence: GATAACGATAATTAATTTC
Position: -19
Score: 5
Sequence: GATAATTAATTTCATTATC
Locus tag: APECO1_1459
APECO1_1459 -25 4.9 GATAACGATAATTAATTTC
-19 5 GATAATTAATTTCATTATC
Supported by regulated orthologs from reference regulons
Ortholog gene name: fepD
Ortholog function: iron-enterobactin (enterochelin) ABC transporter membrane protein
Escherichia coli str. K-12 substr. MG1655 b0590 -37 4.8 GATAACGATAATTAATTTC
-31 4.9 GATAATTAATTTCATTATC
Salmonella typhimurium LT2 STM0592 -37 4.8 GATAACGATAATTACTATC
-31 5 GATAATTACTATCATTATC
Citrobacter koseri ATCC BAA-895 CKO_02571 -37 4.8 GATAACGATAATTACTATC
-31 5 GATAATTACTATCATTATC
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_00608 -43 4.8 GATAACGATAATTACTATC
-37 5 GATAATTACTATCATTATC
Enterobacter sp. 638 Ent638_1122 -30 4.8 GATAACGATAATTACTATC
-24 5 GATAATTACTATCATTATC
Serratia proteamaculans 568 Spro_3424 -48 4.4 AATAATGATAATAAAACTC
-42 4.4 GATAATAAAACTCATTTAT
Position: -98
Score: 5
Sequence: GATAATGAAATTAATTATC
Position: -92
Score: 5
Sequence: GAAATTAATTATCGTTATC
Locus tag: APECO1_1458
APECO1_1458 -98 5 GATAATGAAATTAATTATC
-92 5 GAAATTAATTATCGTTATC
Supported by regulated orthologs from reference regulons
Ortholog gene name: ybdA
Ortholog function: enterobactin exporter EntS, MFS family
Escherichia coli str. K-12 substr. MG1655 b0591 -98 4.8 GATAATGAAATTAATTATC
-92 4.9 GAAATTAATTATCGTTATC
Salmonella typhimurium LT2 STM0593 -98 4.9 GATAATGATAGTAATTATC
-92 4.8 GATAGTAATTATCGTTATC
Citrobacter koseri ATCC BAA-895 CKO_02570 -99 4.9 GATAATGATAGTAATTATC
-93 4.8 GATAGTAATTATCGTTATC
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_00609 -94 4.9 GATAATGATAGTAATTATC
-88 4.8 GATAGTAATTATCGTTATC
Enterobacter sp. 638 Ent638_1123 -94 4.9 GATAATGATAGTAATTATC
-88 4.8 GATAGTAATTATCGTTATC
Serratia proteamaculans 568 Spro_3423 -112 4.4 ATAAATGAGTTTTATTATC
-106 4.4 GAGTTTTATTATCATTATT
Position: -159
Score: 5.3
Sequence: AATAATGATTATCATTTAT
Position: -44
Score: 4.7
Sequence: GAAAATGAGAAGCATTAAC
Locus tag: APECO1_1457
APECO1_1457 -159 5.3 AATAATGATTATCATTTAT
-44 4.7 GAAAATGAGAAGCATTAAC
Supported by regulated orthologs from reference regulons
Ortholog gene name: fepB
Ortholog function: ferric enterobactin (enterochelin) binding protein; periplasmic component
Escherichia coli str. K-12 substr. MG1655 b0592 -230 4.7 GAAAATGAGAAGCATTATT
Citrobacter koseri ATCC BAA-895 CKO_02569 -203 4.7 GAAAATGAGAAGCATTAAC
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_00610 -166 4.8 GATATTAAGAATAATTATC
-160 4.6 AAGAATAATTATCATTTAT
Enterobacter sp. 638 Ent638_1124 -159 4.6 AAGAATAATTATCATTTAT
-44 4.7 GAAAATGAGAAGCATTAAC
Position: -36
Score: 5.2
Sequence: ATAAATGATAATCATTATT
Locus tag: APECO1_1456
APECO1_1456 -36 5.2 ATAAATGATAATCATTATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: entC
Ortholog function: isochorismate synthetase, siderophore biosynthesis
Escherichia coli str. K-12 substr. MG1655 b0593 -163 4.6 AATAATGCTTCTCATTTTC
-48 5 ATAAATGATAATCATTATT
Salmonella typhimurium LT2 STM0595 -170 4.9 AGAAATAATAATCATTATT
-164 4.4 AATAATCATTATTATACAC
Position: -83
Score: 5
Sequence: TATAATGATACGCATTATC
Locus tag: APECO1_1381
APECO1_1381 -83 5 TATAATGATACGCATTATC
Supported by regulated orthologs from reference regulons
Ortholog gene name: fur
Ortholog function: ferric uptake transcription regulator
Escherichia coli str. K-12 substr. MG1655 b0683 -83 4.9 TATAATGATACGCATTATC
Salmonella typhimurium LT2 STM0693 -82 4.9 TATAATGATACGCATTATC
Enterobacter sp. 638 Ent638_1198 -83 4.5 TATAATGAAACGCATTATC
Edwardsiella tarda EIB202 ETAE_2610 -193 4.4 TATAATGAATCTCACTATT
Proteus mirabilis HI4320 PMI0543 -179 4.2 AATATTGAGAATGATAATT
-173 4.5 GAGAATGATAATTATTCAA
Photorhabdus luminescens subsp. laumondii TTO1 plu1327 -106 4.2 GGTTTTCATTTTCATTAGC
Position: -47
Score: 5.2
Sequence: TATAATGAGAATTATTATC
Position: -41
Score: 4.9
Sequence: GAGAATTATTATCATTAAA
Locus tag: APECO1_1333
APECO1_1333 -47 5.2 TATAATGAGAATTATTATC
-41 4.9 GAGAATTATTATCATTAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: gpmA
Ortholog function: phosphoglyceromutase 1
Escherichia coli str. K-12 substr. MG1655 b0755 -47 5 TATAATGAGAATTATTATC
-41 4.7 GAGAATTATTATCATTAAA
Salmonella typhimurium LT2 STM0772 -47 5 TATAATGAGAATTATTATC
-41 4.5 GAGAATTATTATCATTACA
Citrobacter koseri ATCC BAA-895 CKO_02381 -46 5 TATAATGAGAATTATTATC
-40 4.5 GAGAATTATTATCATTCAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_00768 -96 4.6 TATAATGAGAATAGTTATC
Enterobacter sp. 638 Ent638_1246 -164 4.7 TATAATGAGAATTGTTATC
-158 4.1 GAGAATTGTTATCATTCAA
Yersinia pestis KIM y3048 -103 5.3 TATAATGATAATAATTATC
-97 4.6 GATAATAATTATCATTGAA
Serratia proteamaculans 568 Spro_1288 -51 4.9 TATAATGATTTTCGTTATC
Edwardsiella tarda EIB202 ETAE_2569 -49 4.6 CATGATGATAATAATTATC
-43 5.3 GATAATAATTATCATTATA
Position: -129
Score: 4.3
Sequence: GATAATACTTATCAAAATT
Position: -123
Score: 4.4
Sequence: ACTTATCAAAATTATTATC
Position: -117
Score: 4.4
Sequence: CAAAATTATTATCACTTGC
Locus tag: APECO1_1286
APECO1_1286 -129 4.3 GATAATACTTATCAAAATT
-123 4.4 ACTTATCAAAATTATTATC
-117 4.4 CAAAATTATTATCACTTGC
Supported by regulated orthologs from reference regulons
Ortholog gene name: fiu
Ortholog function: iron outer membrane transporter
Escherichia coli str. K-12 substr. MG1655 b0805 -123 4.4 GCTTATCAAAATTATTATC
-117 4.5 CAAAATTATTATCACTTTC
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_01250 -126 4.2 GCAAATGATAACTATTCTT
-120 4.1 GATAACTATTCTTTTTATC
Position: -69
Score: 4.5
Sequence: CGTAATGATAATCGCTATC
Locus tag: APECO1_107
APECO1_107 -69 4.5 CGTAATGATAATCGCTATC
Supported by regulated orthologs from reference regulons
Ortholog gene name: yijD
Ortholog function: iron permease FTR1
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_01045 -76 5 TGTAATGATAATCACTATC
-70 4.2 GATAATCACTATCATAAAT
Enterobacter sp. 638 Ent638_1545 -76 4.9 CGTAATGATAATCACTATC
Erwinia amylovora ATCC 49946 EAM_2059 -80 4.6 GATAATGATAATCCCTATC
Yersinia pestis KIM y2452 -84 4.4 CAGAATGATAATCACAATC
-78 4.3 GATAATCACAATCGTTTTA
Serratia proteamaculans 568 Spro_2929 -109 4.8 CAGAATGATAATCACTATC
Position: -95
Score: 5.5
Sequence: GCTAATGATAATCATTTTC
Position: -89
Score: 4.9
Sequence: GATAATCATTTTCATTTTG
Locus tag: APECO1_274
APECO1_274 -95 5.5 GCTAATGATAATCATTTTC
-89 4.9 GATAATCATTTTCATTTTG
Supported by regulated orthologs from reference regulons
Ortholog gene name: sitA
Ortholog function: iron ABC transporter, periplasmic substrate-binding protein
Salmonella typhimurium LT2 STM2861 -99 4.5 GCAAATAAGAATTATTTTC
-93 4.2 AAGAATTATTTTCATTTAT
Citrobacter koseri ATCC BAA-895 CKO_04090 -84 4.5 GTAAATAAGAATTATTTTC
-78 4.2 AAGAATTATTTTCATTTAT
Citrobacter koseri ATCC BAA-895 CKO_00940 -111 4.1 GATAAAGATAATTTTTCTC
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_03078 -99 4.5 GCAAATAAGAATTATTTTC
-93 4.2 AAGAATTATTTTCATTTAT
Enterobacter sp. 638 Ent638_1111 -98 4.9 TTTAATGATAATTATTTTC
-92 4.5 GATAATTATTTTCATTTAA
Yersinia pestis KIM y1897 -39 5.2 GGTATTGATAATCATTTTC
-33 4.7 GATAATCATTTTCATTTGT
Serratia proteamaculans 568 Spro_2133 -41 5.4 GATATTGATAATCATTTTC
-35 4.6 GATAATCATTTTCATTTGA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA2392 -53 5.1 GATATTGATAATTATTCTC
Proteus mirabilis HI4320 PMI1027 -63 4.2 TGAAATGATATTGATAATC
-57 5.5 GATATTGATAATCATTATC
Photorhabdus luminescens subsp. laumondii TTO1 plu2672 -49 5.2 GATATTGATAATCGTTATC
-43 4.5 GATAATCGTTATCATATAC
Position: -173
Score: 4.9
Sequence: GGTAATGAGAATAATTAAC
Locus tag: APECO1_358
APECO1_358 -173 4.9 GGTAATGAGAATAATTAAC
Supported by regulated orthologs from reference regulons
Ortholog gene name: oppA
Ortholog function: oligopeptide ABC transporter; periplasmic binding protein
Escherichia coli str. K-12 substr. MG1655 b1243 -245 4.7 GGTAATGAGAATAATTAAC
Citrobacter koseri ATCC BAA-895 CKO_01320 -247 4.3 GGTGATGAGAATTATTTTC
-241 4 GAGAATTATTTTCAATAAG
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02197 -216 4.4 GCAAATGAGAATTATTTTT
Enterobacter sp. 638 Ent638_2302 -247 4 GTAGATGAGAATGATTTTC
Position: -157
Score: 4.8
Sequence: GGGAATGGTAATCATTATT
Locus tag: APECO1_591
APECO1_591 -157 4.8 GGGAATGGTAATCATTATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: yncD
Ortholog function: TonB-dependent siderophore outer membrane receptor
Escherichia coli str. K-12 substr. MG1655 b1451 -157 4.7 GGGAATGGTAATCATTATT
Citrobacter koseri ATCC BAA-895 CKO_01493 -181 4.5 GCGAATAGTAATCATTATT
Position: -103
Score: 4.9
Sequence: AATAATGATTACCATTCCC
Locus tag: APECO1_592
APECO1_592 -103 4.9 AATAATGATTACCATTCCC
Supported by regulated orthologs from reference regulons
Ortholog gene name: yncE
Ortholog function: putative receptor, ATP binding
Escherichia coli str. K-12 substr. MG1655 b1452 -103 4.6 AATAATGATTACCATTCCC
Salmonella typhimurium LT2 STM1586 -103 5.2 AATAATGATTATTATTCTC
Citrobacter koseri ATCC BAA-895 CKO_01494 -202 4.5 AATAATGATTACTATTCGC
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_01908 -103 4.5 AATAATGATTACTATTCGC
Enterobacter sp. 638 Ent638_2098 -100 4.8 AATAATGATTACTATTCTC
Serratia proteamaculans 568 Spro_0586 -143 4.8 AATAATGATTACTATTCTC
Position: -4
Score: 4.7
Sequence: GCTAATGATAACCATTCCC
Locus tag: APECO1_624
APECO1_624 -4 4.7 GCTAATGATAACCATTCCC
Supported by regulated orthologs from reference regulons
Ortholog gene name: yddA
Ortholog function: fused predicted multidrug transporter subunits of ABC superfamily: membrane component/ATP-binding component
Escherichia coli str. K-12 substr. MG1655 b1496 -4 4.4 GCTAATGATAACCATTCCC
Position: -331
Score: 4.2
Sequence: TAAAGTTATTTTTATTTTC
Position: -268
Score: 4.6
Sequence: TCAAATGATAATAAATATC
Position: -262
Score: 4.2
Sequence: GATAATAAATATCACTTCA
Locus tag: APECO1_753
APECO1_753 -331 4.2 TAAAGTTATTTTTATTTTC
-268 4.6 TCAAATGATAATAAATATC
-262 4.2 GATAATAAATATCACTTCA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ydhY
Ortholog function: oxidoreductase, Fe-S subunit
Escherichia coli str. K-12 substr. MG1655 b1674 -267 4.5 TCAAATGATAATAAATATC
Citrobacter koseri ATCC BAA-895 CKO_01699 -215 4.4 CTAAATGATAATAAATATC
Proteus mirabilis HI4320 PMI0070 -300 4.1 ACTAACGATAATTAATTTT
Position: -198
Score: 4.6
Sequence: TTAGATAATAATCATTATC
Position: -65
Score: 4.6
Sequence: TGAACTGATAATCATTATC
Position: -59
Score: 5.2
Sequence: GATAATCATTATCACTAAC
Locus tag: APECO1_761
APECO1_761 -198 4.6 TTAGATAATAATCATTATC
-65 4.6 TGAACTGATAATCATTATC
-59 5.2 GATAATCATTATCACTAAC
Supported by regulated orthologs from reference regulons
Ortholog gene name: sufA
Ortholog function: scaffold protein for iron-sulfur cluster assembly
Escherichia coli str. K-12 substr. MG1655 b1684 -65 4.4 TGAACTGATAATCATTATC
-59 5.1 GATAATCATTATCACTAAC
Salmonella typhimurium LT2 STM1369 -66 4.7 TGAAGTGATAATCATTATC
-60 5.1 GATAATCATTATCACTAAC
Citrobacter koseri ATCC BAA-895 CKO_01717 -66 4.7 TGAAGTGATAATCATTATC
-60 5.1 GATAATCATTATCACTAAC
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02141 -66 4.7 TGAAGTGATAATCATTATC
-60 5.1 GATAATCATTATCACTAAC
Enterobacter sp. 638 Ent638_1760 -67 4.4 TGAAGTGATAATCGTTATC
-61 4.7 GATAATCGTTATCACTAAC
Yersinia pestis KIM y1934 -129 4.5 TGAAGTGATAATTATTATC
-123 4.8 GATAATTATTATCACTACC
Serratia proteamaculans 568 Spro_2179 -77 4.4 TGAAGTGATAATCGTTATC
-71 4.7 GATAATCGTTATCACTAAC
Proteus mirabilis HI4320 PMI1416 -66 4.4 GATAAGGGTTATCATTACC
-60 4 GGTTATCATTACCATTAGA
Photorhabdus luminescens subsp. laumondii TTO1 plu2622 -87 4.4 GATAAAGGTTATCATTACC
-81 4.3 GGTTATCATTACCATTATA
Position: -126
Score: 3.7
Sequence: GGTAATGCGTTTTATTCCC
Position: -94
Score: 4.1
Sequence: ATAAATGATATTTATATTT
Locus tag: APECO1_950
APECO1_950 -126 3.7 GGTAATGCGTTTTATTCCC
-94 4.1 ATAAATGATATTTATATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ftnA
Ortholog function: ferritin
Escherichia coli str. K-12 substr. MG1655 b1905 -127 3.4 GgTAATGcgttTtATTccC
-121 3 GcgttTtATtccCATTcgt
Salmonella typhimurium LT2 STM1935 -100 4 AATAATTAAATTTAATATT
Citrobacter koseri ATCC BAA-895 CKO_01042 -97 4.3 AATAATTAAATTTATTATT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02402 -161 4 ATAAATTAAAAGCATTCTC
-155 3.8 TAAAAGCATTCTCATTTAT
Enterobacter sp. 638 Ent638_2486 -103 3.7 TATTTTAATAAATAATATC
-97 3.6 AATAAATAATATCTTTATT
Erwinia amylovora ATCC 49946 EAM_2940 -131 4.4 TGGAATGATTATCAATTAC
Yersinia pestis KIM y2524 -93 4.4 AATAATGTGAATGATTATC
-87 4.1 GTGAATGATTATCATGATG
Serratia proteamaculans 568 Spro_1942 -174 4.5 GAAAATAGTTATCATAATT
-168 4 AGTTATCATAATTATTTAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA2473 -158 4.6 TTAAATGATAATGAATATC
-152 4.8 GATAATGAATATCAATAGC
Proteus mirabilis HI4320 PMI1007 -184 4.7 GTTAATGATAATCAATTCC
-178 4.1 GATAATCAATTCCATTAAT
Photorhabdus luminescens subsp. laumondii TTO1 plu2689 -147 4.4 TTAAATGAGATTCATTTTC
-141 4.4 GAGATTCATTTTCATTTTT
Position: -38
Score: 4.5
Sequence: ATAAATGATACTCACTCTC
Locus tag: APECO1_957
APECO1_957 -38 4.5 ATAAATGATACTCACTCTC
Supported by regulated orthologs from reference regulons
Ortholog gene name: sdiA
Ortholog function: transcriptional regulator of ftsQAZ gene cluster (LuxR/UhpA family)
Escherichia coli str. K-12 substr. MG1655 b1916 -38 4.4 ATAAATGATACTCACTCTC
Salmonella typhimurium LT2 STM1950 -44 4.4 ATTCATAATAATGATTATC
-38 5.3 AATAATGATTATCAATATC
Citrobacter koseri ATCC BAA-895 CKO_01029 -44 4.4 AAACATTATAATGATTATC
-38 5 TATAATGATTATCAATCTC
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02414 -78 4.6 ATTTATAATAATGATTATC
-72 4.4 AATAATGATTATCAATCAG
Enterobacter sp. 638 Ent638_2503 -39 4.2 AATAATGATTAGTTTTTTC
Position: -95
Score: 5
Sequence: GATAATGGTTATTATTCAC
Locus tag: APECO1_1056
APECO1_1056 -95 5 GATAATGGTTATTATTCAC
Supported by regulated orthologs from reference regulons
Ortholog gene name: ybtP
Ortholog function: yersiniabactin-iron ABC transporter, ATPase/permease components
Citrobacter koseri ATCC BAA-895 CKO_01250 -191 4.4 GTTATTGATAATGGTTATT
-185 4.7 GATAATGGTTATTATTCAC
Citrobacter koseri ATCC BAA-895 CKO_00913 -191 4.4 GTTATTGATAATGGTTATT
-185 4.7 GATAATGGTTATTATTCAC
Yersinia pestis KIM y2397 -101 4.4 GTTATTGATAATGGTTATT
-95 4.7 GATAATGGTTATTATTCAC
Position: -90
Score: 5
Sequence: GTGAATAATAACCATTATC
Position: -84
Score: 4.8
Sequence: AATAACCATTATCAATAAC
Locus tag: APECO1_1057
APECO1_1057 -90 5 GTGAATAATAACCATTATC
-84 4.8 AATAACCATTATCAATAAC
Supported by regulated orthologs from reference regulons
Ortholog gene name: ybtA
Ortholog function: AraC-type transcriptional regulator for yersiniabactin uptake and biosynthetic genes
Citrobacter koseri ATCC BAA-895 CKO_00912 -90 4.7 GTGAATAATAACCATTATC
-84 4.6 AATAACCATTATCAATAAC
Citrobacter koseri ATCC BAA-895 CKO_01249 -90 4.7 GTGAATAATAACCATTATC
-84 4.6 AATAACCATTATCAATAAC
Yersinia pestis KIM y2398 -90 4.7 GTGAATAATAACCATTATC
-84 4.6 AATAACCATTATCAATAAC
Position: -45
Score: 5.2
Sequence: GTTAATAATTATTATTCTC
Locus tag: APECO1_1058
APECO1_1058 -45 5.2 GTTAATAATTATTATTCTC
Supported by regulated orthologs from reference regulons
Ortholog gene name: irp2
Ortholog function: non-ribosomal peptide synthase (siderophore synthase)
Citrobacter koseri ATCC BAA-895 CKO_00911 -63 4.9 GTTAATAATTATTATTCTC
Yersinia pestis KIM y2399 -63 5.1 GTTAATAATTATTATTATC
Position: -74
Score: 4.8
Sequence: AGAAATAGTTATCATTTTC
Locus tag: APECO1_1063
APECO1_1063 -74 4.8 AGAAATAGTTATCATTTTC
Supported by regulated orthologs from reference regulons
Ortholog gene name: fyuA
Ortholog function: TonB-dependent siderophore receptor
Citrobacter koseri ATCC BAA-895 CKO_00905 -74 4.6 AGAAATAGTTATCATTTTC
Citrobacter koseri ATCC BAA-895 CKO_01243 -74 4.6 AGAAATAGTTATCATTTTC
Yersinia pestis KIM y2404 -74 4.6 AGAAATAGTTATCATTTTC
Proteus mirabilis HI4320 PMI2596 -64 4.2 GCAAATGATATTAATTCGC
-58 4.4 GATATTAATTCGCATTAAC
Photorhabdus luminescens subsp. laumondii TTO1 plu2316 -160 5.1 ATTAATGAGAATCATTATC
-154 4.6 GAGAATCATTATCAATAGT
Position: -68
Score: 4.9
Sequence: GAGTTTGATAATCATTCTC
Position: -62
Score: 4.8
Sequence: GATAATCATTCTCATTTAA
Locus tag: APECO1_4146
APECO1_4146 -68 4.9 GAGTTTGATAATCATTCTC
-62 4.8 GATAATCATTCTCATTTAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: mntH
Ortholog function: Mn2+/Fe2+ transporter, NRAMP family
Escherichia coli str. K-12 substr. MG1655 b2392 -68 4.7 GAATTTGATAATCATTCTC
-62 4.2 GATAATCATTCTCGTTTGG
Salmonella typhimurium LT2 STM2408 -68 4.5 GCACTTGATAATCATTATC
-62 4.8 GATAATCATTATCAATAAA
Citrobacter koseri ATCC BAA-895 CKO_00404 -50 4.3 GCACTTGATAATCATTCTC
-44 4.5 GATAATCATTCTCAATAAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02743 -68 4.3 GAACTTGATAATCATTCGC
-62 4.3 GATAATCATTCGCATTTTG
Enterobacter sp. 638 Ent638_2926 -67 4.8 GATCTTGATAATCATTCTC
-61 4.8 GATAATCATTCTCATTTTG
Yersinia pestis KIM y1500 -78 4 GCGCTTGATAATTATTCTC
-72 4.6 GATAATTATTCTCATTTAA
Serratia proteamaculans 568 Spro_3415 -66 4.3 GCACTTGATAATTATTATC
-60 5.2 GATAATTATTATCATTTAC
Erwinia carotovora subsp. atroseptica SCRI1043 ECA0843 -63 4.5 GCACTTGATAATCATTATC
-57 5.2 GATAATCATTATCATTTTT
Edwardsiella tarda EIB202 ETAE_1142 -134 4.5 GCAGTTGATAATCATTATC
Position: -82
Score: 4.2
Sequence: AGTAATGAGAACGACTATC
Locus tag: APECO1_3418
APECO1_3418 -82 4.2 AGTAATGAGAACGACTATC
Supported by regulated orthologs from reference regulons
Ortholog gene name: exbB
Ortholog function: TonB-dependent siderophore transporter component ExbB
Escherichia coli str. K-12 substr. MG1655 b3006 -82 4.1 AGTAATGAGAACGACTATC
Salmonella typhimurium LT2 STM3159 -82 4.1 AGTAATGAGAACGACTATC
Citrobacter koseri ATCC BAA-895 CKO_04401 -97 4.1 AGTAATGAGAACGACTATC
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_03426 -97 4.3 ACTAATGAGAACCACTATC
Enterobacter sp. 638 Ent638_3417 -97 4.3 ACTAATGAGAACCACTATC
Yersinia pestis KIM y3495 -71 4.8 ACTAATGATAATTACTATC
Serratia proteamaculans 568 Spro_4211 -94 4.4 AATAATGAGAACTACTATC
Erwinia carotovora subsp. atroseptica SCRI1043 ECA0358 -206 4.3 AATAATGAGAACGACTATC
Proteus mirabilis HI4320 PMI0029 -170 4.8 AGTAATGATAATTACTATC
Photorhabdus luminescens subsp. laumondii TTO1 plu3941 -98 5.1 AATAATGATAATTACTATC
Position: -345
Score: 4.7
Sequence: AAAAATAAAACTCATTCTC
Position: -117
Score: 4.3
Sequence: TTGAATGATTCTCAATTAC
Locus tag: APECO1_3384
APECO1_3384 -345 4.7 AAAAATAAAACTCATTCTC
-117 4.3 TTGAATGATTCTCAATTAC
Supported by regulated orthologs from reference regulons
Ortholog gene name: CKO_02848
Ortholog function: TonB-dependent siderophore receptor
Citrobacter koseri ATCC BAA-895 CKO_02848 -175 4.1 TTGAATGATTCTCAATTAC
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02105 -210 4.1 TTGAATGATTCTCAATTAC
Enterobacter sp. 638 Ent638_3442 -118 4.1 TTGAATGATTCTCAATTAC
Yersinia pestis KIM y3343 -41 4.2 ACAAACGATTTTGATTATC
-35 4.6 GATTTTGATTATCATTCGC
Serratia proteamaculans 568 Spro_1016 -52 4.3 GCTAATGAGAGTGATTATC
Position: -216
Score: 4
Sequence: AAGTATAAAAATGATTTTT
Position: -71
Score: 4.3
Sequence: ATGATTAACAATCATTATC
Position: -65
Score: 4.9
Sequence: AACAATCATTATCATTTGC
Locus tag: APECO1_3346
APECO1_3346 -216 4 AAGTATAAAAATGATTTTT
-71 4.3 ATGATTAACAATCATTATC
-65 4.9 AACAATCATTATCATTTGC
Supported by regulated orthologs from reference regulons
Ortholog gene name: yqjH
Ortholog function: FAD-binding 9, siderophore-interacting domain protein
Escherichia coli str. K-12 substr. MG1655 b3070 -71 4.2 ATGATTAACAATCATTATC
-65 4.6 AACAATCATTATCATTTGC
Salmonella typhimurium LT2 STM3214 -62 4.3 AACAATCATTATCATTTAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_03499 -62 4.5 GGCAATCATTATCATTTGC
Enterobacter sp. 638 Ent638_3524 -61 4.1 AGCAATCATTATCATTTAA
Position: -318
Score: 4.2
Sequence: TGAAATAAGAACTATTTTC
Position: -312
Score: 4.1
Sequence: AAGAACTATTTTCATTTAT
Locus tag: APECO1_3116
APECO1_3116 -318 4.2 TGAAATAAGAACTATTTTC
-312 4.1 AAGAACTATTTTCATTTAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: bfr
Ortholog function: bacterioferrin
Escherichia coli str. K-12 substr. MG1655 b3336 -51 3.9 tgaAATaAgAActATTtTC
-45 3.9 aAgAActATttTCATTtat
Citrobacter koseri ATCC BAA-895 CKO_04743 -55 4.3 TGTAATCATAACTATTCTC
-49 4.2 CATAACTATTCTCATTTAC
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_03722 -55 4.6 TGTAATCATAACCATTCTC
-49 3.9 cATAAccATtcTCATTtaa
Position: -309
Score: 5.6
Sequence: GATAATAATTCTCATTATC
Locus tag: APECO1_2948
APECO1_2948 -309 5.6 GATAATAATTCTCATTATC
Supported by regulated orthologs from reference regulons
Ortholog gene name: hemR
Ortholog function: TonB-dependent outer membrane hemin receptor
Enterobacter sp. 638 Ent638_1741 -50 4.2 TTTGTTGATAATGATTATC
-44 5.1 GATAATGATTATCATTGTT
Position: -48
Score: 4.5
Sequence: TCAAATGATAATCATGATC
Position: -42
Score: 5
Sequence: GATAATCATGATCATTCTC
Locus tag: APECO1_2947
APECO1_2947 -48 4.5 TCAAATGATAATCATGATC
-42 5 GATAATCATGATCATTCTC
Supported by regulated orthologs from reference regulons
Ortholog gene name: hemT
Ortholog function: hemin ABC transporter, substrate-binding protein
Citrobacter koseri ATCC BAA-895 CKO_02655 -45 4.2 GCGAATGATAATGATGATC
-39 4.7 GATAATGATGATCATTTAC
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_03089 -133 4 GATAATACCTATCATTACC
Enterobacter sp. 638 Ent638_1739 -50 4.2 TTTGTTGATAATGATTATC
-44 5.1 GATAATGATTATCATTGTT
Erwinia amylovora ATCC 49946 EAM_1641 -65 4.2 TTTGTTGATAATGATTATC
-59 4.8 GATAATGATTATCATTCCA
Yersinia pestis KIM y0541 -48 3.7 GATAATGCTTATCACACTG
-30 4.1 GATAGTCGTTATCATTAAG
Serratia proteamaculans 568 Spro_2167 -68 4 TCACATGATAATGATTCTC
-62 4.6 GATAATGATTCTCACTTTG
Erwinia carotovora subsp. atroseptica SCRI1043 ECA1845 -59 4.7 GAAAATGATTCTCATTCAT
Edwardsiella tarda EIB202 ETAE_1799 -10 4.1 TTATACGATAATGATTATC
-4 5.1 GATAATGATTATCATTAAG
Proteus mirabilis HI4320 PMI1428 -52 5.1 GATAACGATAATGATTATC
-46 5.4 GATAATGATTATCATAATC
-40 4.4 GATTATCATAATCATAACC
Photorhabdus luminescens subsp. laumondii TTO1 plu2634 -54 4.7 TATAACGATAATAATTCTC
-48 4.6 GATAATAATTCTCACTATG
Position: -93
Score: 4.9
Sequence: GGCATTGATAATCATTTTC
Position: -87
Score: 5.2
Sequence: GATAATCATTTTCAATATC
Locus tag: APECO1_2560
APECO1_2560 -93 4.9 GGCATTGATAATCATTTTC
-87 5.2 GATAATCATTTTCAATATC
Supported by regulated orthologs from reference regulons
Ortholog gene name: sodA
Ortholog function: manganese/iron superoxide dismutase
Escherichia coli str. K-12 substr. MG1655 b3908 -99 4.7 GGCATTGATAATCATTTTC
-93 5 GATAATCATTTTCAATATC
Salmonella typhimurium LT2 STM4055 -99 4.7 GGCATTGATAATCATTTTC
-93 5 GATAATCATTTTCAATATC
Citrobacter koseri ATCC BAA-895 CKO_03093 -88 4.3 GGCATTGATAAGCATTTTC
-82 4.4 GATAAGCATTTTCAATATC
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_04217 -88 4.3 GGCATTGATAAGCATTTTC
-82 4 GATAAGCATTTTCAATACC
Enterobacter sp. 638 Ent638_4063 -100 4.7 GGCATTGATAATCATTTTC
-94 5 GATAATCATTTTCAATATC
Yersinia pestis KIM y4080 -104 4.4 AGGTTTGATAATCATTTTC
-98 5 GATAATCATTTTCAATATC
Serratia proteamaculans 568 Spro_0081 -105 4.7 GGCATTGATAATCATTTTC
-99 5 GATAATCATTTTCAATATC
Erwinia carotovora subsp. atroseptica SCRI1043 ECA0092 -105 4.9 AATAATCATTTTCAATATC
Proteus mirabilis HI4320 PMI3036 -95 4.6 GGATATGATAATGATTTTC
-89 5.2 GATAATGATTTTCATTAAC
Photorhabdus luminescens subsp. laumondii TTO1 plu0075 -102 4.3 GGTATTGATAAGCATTTCC
Position: -99
Score: 4.7
Sequence: GATAATTTTTATCATTTGC
Locus tag: APECO1_2057
APECO1_2057 -99 4.7 GATAATTTTTATCATTTGC
Supported by regulated orthologs from reference regulons
Ortholog gene name: fhuF
Ortholog function: ferric iron reductase involved in ferric hydroximate transport
Escherichia coli str. K-12 substr. MG1655 b4367 -122 5.1 GATAATGATAACCAATATC
-99 4.5 GATAATTTTTATCATTTGC
-34 4 AGCAATCATTATCATTTAG
Salmonella typhimurium LT2 STM4550 -238 4 GGAATTGATAATGATAACC
-232 5.1 GATAATGATAACCAATATC
Citrobacter koseri ATCC BAA-895 CKO_03429 -234 4.8 GATAATGATAACCAATAGC
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_04821 -44 4.5 AATATCAGTAATCATTATC
-38 4.4 AGTAATCATTATCATTTAG
Enterobacter sp. 638 Ent638_0527 -237 5.1 GATAATGATAACCAATATC
Yersinia pestis KIM y2642 -67 4.9 GCTATTGATAATCACTATC
-61 4.4 GATAATCACTATCATTCTG
Photorhabdus luminescens subsp. laumondii TTO1 plu4627 -100 4.3 GACAATGATAATAATAATA
-94 5.3 GATAATAATAATAATTATC
-88 4.9 AATAATAATTATCATAATT
-82 4.1 AATTATCATAATTATATTT
Position: 2
Score: 5.3
Sequence: GATATTGGTTATCATTATC
Locus tag: APECO1_2056
APECO1_2056 2 5.3 GATATTGGTTATCATTATC
Supported by regulated orthologs from reference regulons
Ortholog gene name: yjjZ
Ortholog function: putative membrane protein
Escherichia coli str. K-12 substr. MG1655 b4567 -60 4.4 GCAAATGATAAAAATTATC
-37 5.2 GATATTGGTTATCATTATC
Salmonella typhimurium LT2 STM4552 -37 5.2 GATATTGGTTATCATTATC
-31 4.2 GGTTATCATTATCAATTCC
Citrobacter koseri ATCC BAA-895 CKO_03427 2 4.9 GCTATTGGTTATCATTATC
8 4.1 GGTTATCATTATCGGTATC
Enterobacter sp. 638 Ent638_0529 -37 5.2 GATATTGGTTATCATTATC
-31 4 GGTTATCATTATCATATTG
Erwinia amylovora ATCC 49946 EAM_0565 -70 4.3 CAAAGTGATAATGATTAAC
-64 4.3 GATAATGATTAACATATGC
-47 4.9 GCTATTGGTAATCATTATC
-41 4.8 GGTAATCATTATCATTTAT
Yersinia pestis KIM y3754 -4 4.9 GATATTGGTTATGATTATC
2 5.2 GGTTATGATTATCATTATC
Serratia proteamaculans 568 Spro_0646 -39 4.7 GATATTAGTTCTCATTATC
Erwinia carotovora subsp. atroseptica SCRI1043 ECA0738 -89 5 GATATTAGTTATCATTATC
-83 4.5 AGTTATCATTATCATTTTT
Proteus mirabilis HI4320 PMI2497 -27 5.3 AATAATGAAAATCATTATC
-21 5.2 GAAAATCATTATCATTAAC
Photorhabdus luminescens subsp. laumondii TTO1 plu4253 -92 5.2 GATATTGGTAATCATTATC
-86 4.7 GGTAATCATTATCATTTGT
Position: -71
Score: 4.8
Sequence: AATAATGAGTTTCATTTGC
Locus tag: APECO1_O1CoBM102
APECO1_O1CoBM102 -71 4.8 AATAATGAGTTTCATTTGC
Supported by regulated orthologs from reference regulons
Ortholog gene name: eitA
Ortholog function: citrate-dependent iron(III) ABC transporter, peiplasmic component
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02149 -101 4.6 AATAATGAGTTTCATTTGC
Enterobacter sp. 638 Ent638_3205 -73 4.8 TAAAATGAGTTTCATTATC
-67 4.2 GAGTTTCATTATCATTAAA
Position: -4
Score: 5.4
Sequence: GATAATGAGAATCATTATT
Position: 17
Score: 4.2
Sequence: CATAATTGTTATTATTTTA
Locus tag: APECO1_O1CoBM172
APECO1_O1CoBM172 -4 5.4 GATAATGAGAATCATTATT
17 4.2 CATAATTGTTATTATTTTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: iucA2
Ortholog function: aerobactin synthetase (subunit alpha)
Yersinia pestis KIM y3380 -63 4.8 GATAATGATAACCACTATT
Yersinia pestis KIM y3381 -63 4.8 GATAATGATAACCACTATT
Serratia proteamaculans 568 Spro_0922 -63 4.2 GATAACAATAAATATTATT
-45 4.1 TGATATAAGAATCATTCTC
Position: -93
Score: 5.1
Sequence: GCTAATGATAATTATTTAC
Position: -87
Score: 4.3
Sequence: GATAATTATTTACATTTTA
Locus tag: APECO1_O1CoBM180
APECO1_O1CoBM180 -93 5.1 GCTAATGATAATTATTTAC
-87 4.3 GATAATTATTTACATTTTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: sitA
Ortholog function: iron ABC transporter, periplasmic substrate-binding protein
Salmonella typhimurium LT2 STM2861 -99 4.5 GCAAATAAGAATTATTTTC
-93 4.2 AAGAATTATTTTCATTTAT
Citrobacter koseri ATCC BAA-895 CKO_04090 -84 4.5 GTAAATAAGAATTATTTTC
-78 4.2 AAGAATTATTTTCATTTAT
Citrobacter koseri ATCC BAA-895 CKO_00940 -111 4.1 GATAAAGATAATTTTTCTC
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_03078 -99 4.5 GCAAATAAGAATTATTTTC
-93 4.2 AAGAATTATTTTCATTTAT
Enterobacter sp. 638 Ent638_1111 -98 4.9 TTTAATGATAATTATTTTC
-92 4.5 GATAATTATTTTCATTTAA
Yersinia pestis KIM y1897 -39 5.2 GGTATTGATAATCATTTTC
-33 4.7 GATAATCATTTTCATTTGT
Serratia proteamaculans 568 Spro_2133 -41 5.4 GATATTGATAATCATTTTC
-35 4.6 GATAATCATTTTCATTTGA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA2392 -53 5.1 GATATTGATAATTATTCTC
Proteus mirabilis HI4320 PMI1027 -63 4.2 TGAAATGATATTGATAATC
-57 5.5 GATATTGATAATCATTATC
Photorhabdus luminescens subsp. laumondii TTO1 plu2672 -49 5.2 GATATTGATAATCGTTATC
-43 4.5 GATAATCGTTATCATATAC
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