Propagation of TyrR regulog to Escherichia coli APEC O1

Reference regulog properties
Source regulog:	TyrR - Enterobacteriales
Regulator type:	Transcription factor
Regulator family:	TyrR
Regulation mode:	activator (repressor)
Biological process:	Aromatic amino acid metabolism
Effector:	Tyrosine; Phenylalanine
Phylum:	Proteobacteria/gamma
Propagated regulon:
Target genome	Escherichia coli APEC O1
Orthologous TF(s)	APECO1_2594, APECO1_476
Regulated genes	10

Built upon 106 sites [see more]

Predicted regulatory interactions in *Escherichia coli APEC O1*
	Locus tag	Position	Score	Sequence
Position: -227 Score: 4.4 Sequence: ATGTGATGAAAAACTTACAA Position: -91 Score: 4.4 Sequence: ATGTAAAGAAACCAATACAA Position: -68 Score: 4.4 Sequence: ACGGAATTACAAAATTACAC Locus tag: APECO1_1877
	APECO1_1877	-227	4.4	ATGTGATGAAAAACTTACAA
		-91	4.4	ATGTAAAGAAACCAATACAA
		-68	4.4	ACGGAATTACAAAATTACAC
Supported by regulated orthologs from reference regulons
Ortholog gene name: aroP
Ortholog function: Aromatic amino acid transport protein AroP
Escherichia coli str. K-12 substr. MG1655	b0112	-89	5	ATGTAAACAAATTAATACAA
Salmonella typhimurium LT2	STM0150	-108	5.2	TTGTAAATAAATCAATACAA
Citrobacter koseri ATCC BAA-895	CKO_03262	-87	5	GcGTAAAcaTAttaaTACAa
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_00116	-192	4.8	CCGTAAACAAAACAATACAG
Enterobacter sp. 638	Ent638_0658	-87	4.4	CCGTAACGAAATAAATACAT
		-64	4.5	ATGGAATTTCATAATTACAC
Erwinia amylovora ATCC 49946	EAM_0745	-187	4.4	GCGTAAAGTTTCCAATACAC
Yersinia pestis KIM	y0765	-234	5.3	GTGTAATTAAATGATTACAT
Serratia proteamaculans 568	Spro_4013	-80	4.4	CCGTAAATAAAACAAAACAC
Erwinia carotovora subsp. atroseptica SCRI1043	ECA3791	-93	5.4	CCGTAAAAATAAAATTACAC
Edwardsiella tarda EIB202	ETAE_0657	-91	5.4	ATGTAAAAATAAAATTACGA

Position: -182 Score: 5.6 Sequence: ATGTAATTTATTATTTACAC Position: -106 Score: 5 Sequence: GTGGAATTTTTTCTTTACAA Locus tag: APECO1_1620
	APECO1_1620	-182	5.6	ATGTAATTTATTATTTACAC
		-106	5	GTGGAATTTTTTCTTTACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: aroL
Ortholog function: Shikimate kinase III (EC 2.7.1.71)
Escherichia coli str. K-12 substr. MG1655	b0388	-182	5.6	ATGTAATTTATTATTTACAC
		-106	5	GTGGAATTTTTTCTTTACAA
Salmonella typhimurium LT2	STM0388	-181	5.4	ATGTAATGAAAAATTTACAG
		-107	5.8	GTGTAAATTATTATTTACAT
Citrobacter koseri ATCC BAA-895	CKO_02783	-238	5.4	ATGTAATGTTATTTTTACAC
		-163	5	GTGGAATGATTTATTTACAT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_00332	-165	4.6	ATGCAATGATAAGTTTACAT
		-101	5.3	GTGTAATTTTTTCTTTACGT
Enterobacter sp. 638	Ent638_0859	-182	4.5	ATGCAATGATTTCTTTACAG
		-108	4.9	CTGTAATCCAATTTTTACAA
Erwinia amylovora ATCC 49946	EAM_0932	-126	4.5	CTGTAAATAAAACGTTACTG
Yersinia pestis KIM	y0972	-174	5	GTGTATTATTAATTTTACGT
Serratia proteamaculans 568	Spro_1018	-122	4.9	TCGTAAATATTGAAATACAG
Proteus mirabilis HI4320	PMI0371	-57	5.5	TTGTAAATTTTAGATTACAC

Position: -74 Score: 5 Sequence: CCGTAAATTTTTATTGACAG Locus tag: APECO1_41
	APECO1_41	-74	5	CCGTAAATTTTTATTGACAG
Supported by regulated orthologs from reference regulons
Ortholog gene name: ompF
Ortholog function: outer membrane porin F
Escherichia coli str. K-12 substr. MG1655	b0929	-75	5	CCGTAAATTTTTATTGACAG
Citrobacter koseri ATCC BAA-895	CKO_02137	-76	5	ccGTAAATTTttATTgACAg

Position: -89 Score: 3.7 Sequence: GTGTCAATGATTGTTGACAG Locus tag: APECO1_476
	APECO1_476	-89	3.7	GTGTCAATGATTGTTGACAG
Supported by regulated orthologs from reference regulons
Ortholog gene name: tyrR
Ortholog function: Transcriptional regulator of aromatic amino acid biosynthesis
Escherichia coli str. K-12 substr. MG1655	b1323	-89	3.7	GTGTCAATGATTGTTGACAG
Salmonella typhimurium LT2	STM1683	-89	4.2	CTGTCAATATTTGTTGACAG
Citrobacter koseri ATCC BAA-895	CKO_01393	-90	4.2	CTGTCAATAATTGTTGACAG
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_01305	-90	4.2	CTGTCAATAATTGTTGACAG
Enterobacter sp. 638	Ent638_2152	-86	3.7	CTGTCAATATCTGTTGACAG
Erwinia amylovora ATCC 49946	EAM_1834	-96	3.9	CTGTCAACTTTTCATGACAG
Serratia proteamaculans 568	Spro_2617	-98	3.6	CTGTCAACTTTTGCTGACAG
Proteus mirabilis HI4320	PMI1369	-96	3.7	GTGTCAACTTTTGCTGACAA
Photorhabdus luminescens subsp. laumondii TTO1	plu2580	-178	3.7	TTTTATAATCAATCTTACAA

Position: -110 Score: 5.5 Sequence: TTGTACATTTATATTTACAA Locus tag: APECO1_952
	APECO1_952	-110	5.5	TTGTACATTTATATTTACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: tyrP
Ortholog function: Tyrosine-specific transport protein
Escherichia coli str. K-12 substr. MG1655	b1907	-110	5.6	TTGTACATTTATATTTACAC
Citrobacter koseri ATCC BAA-895	CKO_01040	-83	4.6	TCGTAAACAATGGTATACAC

Position: -111 Score: 4.4 Sequence: TTGAAATCTTTTAAATACAT Position: -84 Score: 4.4 Sequence: ATGTAATCTTTAAAATAAAA Locus tag: APECO1_1001
	APECO1_1001	-111	4.4	TTGAAATCTTTTAAATACAT
		-84	4.4	ATGTAATCTTTAAAATAAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ompF
Ortholog function: outer membrane porin F
Salmonella typhimurium LT2	STM0999	-77	4.7	CTGTAAAGTTTTATTGACGG
Enterobacter sp. 638	Ent638_1448	-77	4.5	CCGGAAATATTTATTGACAG

Position: -165 Score: 5.5 Sequence: GTGTAAATTTATTTATACAG Position: -113 Score: 4.9 Sequence: ATGTAAAGAAATGTGTACGA Locus tag: APECO1_3932
	APECO1_3932	-165	5.5	GTGTAAATTTATTTATACAG
		-113	4.9	ATGTAAAGAAATGTGTACGA
Supported by regulated orthologs from reference regulons
Ortholog gene name: aroF
Ortholog function: 2-keto-3-deoxy-D-arabino-heptulosonate-7-phosphate synthase (EC 2.5.1.54)
Escherichia coli str. K-12 substr. MG1655	b2601	-165	5.4	GTGTAAATTTATCTATACAG
		-113	5.4	GTGTAAATAAAAATGTACGA
		-90	4	ATGGATTGAAAACTTTACTT
Salmonella typhimurium LT2	STM2670	-164	4.5	GTGTAAAGTTTTTGATACGA
		-113	5.3	GTGTAAAGTTTATTTTACGT
		-90	4	ATGGATTGAAATCTTTACTT
Citrobacter koseri ATCC BAA-895	CKO_03921	-165	5.3	ATGTAAATTTTTATGTACGA
		-112	5.4	ATGTAAAGTAAAATTTACGG
		-89	4	GTGGATTGAAATCTTTACCG
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_02923	-166	4.9	GTGTAAATATTGTTATACGC
		-113	5.7	GTGTAAATTAAAATTTACGG
		-90	4	ATGGATTGAATTCTTTACTT
Enterobacter sp. 638	Ent638_3080	-165	5.4	CTGTAATTTTATGTTTACGA
		-112	5.7	GTGTAAATTAAAATTTACGG
		-89	4	TTGGATTGAAATCTTTACTG
Erwinia amylovora ATCC 49946	EAM_2621	-202	5.3	CTGTAATCTTTTATTTACGC
		-106	4.1	CTGGTAATTAATGTGTACAC
		-73	4	ATGTACTCATTATGGTACAG
Yersinia pestis KIM	y0903	-114	5.2	TAGTAATTATTTATTTACAA
		-92	4.5	ATGGATTGAAAACTTTACAT
Serratia proteamaculans 568	Spro_0879	-122	5.1	TGGTAATTTTTTATTTACAG
		-99	4.6	TCGGATTTAAAACTTTACAT
Erwinia carotovora subsp. atroseptica SCRI1043	ECA3352	-156	5.2	TGGTAATTTTTTATTTACAC
		-133	4.6	GTGGATTTAAATCTTTACGG
Edwardsiella tarda EIB202	ETAE_2837	-129	4.6	GTGTAAAGATGAATGTACGA
		-117	4.6	ATGTACGATATTGTTTACAT
		-95	4	ATGGATTGAAAAGTTTACTG
Proteus mirabilis HI4320	PMI0387	-244	5.6	GTGTAAAATTAAAATTACAG
		-127	5.2	ATGTAAACATATGATTACGA
		-85	4.5	ATGGATTGATTTCTTTACAT
Photorhabdus luminescens subsp. laumondii TTO1	plu1262	-140	5.5	TTGTAAACAATAATTTACAG
		-98	4.3	TTGGATTGTATTCTTTACGA

Position: -129 Score: 5.3 Sequence: CTGTAAAATAATATATACAG Locus tag: APECO1_3269
	APECO1_3269	-129	5.3	CTGTAAAATAATATATACAG
Supported by regulated orthologs from reference regulons
Ortholog gene name: mtr
Ortholog function: Tryptophan-specific transport protein
Escherichia coli str. K-12 substr. MG1655	b3161	-129	5.3	CTGTAAAATAATATATACAG
Salmonella typhimurium LT2	STM3279	-129	5.2	GCGTAAAGTAAAATATACAG
Citrobacter koseri ATCC BAA-895	CKO_04558	-129	5.1	CCGTAAAGTAAAATATACAG
Enterobacter sp. 638	Ent638_3598	-128	5.2	GCGTAAAGTAATATATACAG

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Propagation of TyrR regulog to Escherichia coli APEC O1

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --