Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
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Propagation of GalR/GalS regulog to Escherichia coli APEC O1

Reference regulog properties
Source regulog: GalR/GalS - Enterobacteriales
Regulator type: Transcription factor
Regulator family: LacI
Regulation mode: repressor (activator)
Biological process: Galactose utilization
Effector: Galactose
Phylum: Proteobacteria/gamma
Propagated regulon:
Target genome Escherichia coli APEC O1
Orthologous TF(s) APECO1_4400, APECO1_3669
Regulated genes 5
Built upon 78 sites [see more]
Predicted regulatory interactions in Escherichia coli APEC O1
Locus tag Position Score Sequence
Position: -54
Score: 6.3
Sequence: CTGTGTAAACGATTCCACTA
Locus tag: APECO1_1329
APECO1_1329 -54 6.3 CTGTGTAAACGATTCCACTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: galE
Ortholog function: UDP-galactose-4-epimerase
Escherichia coli str. K-12 substr. MG1655 b0759 -96 6.6 TTGTGTAAACGATTCCACTA
Salmonella typhimurium LT2 STM0776 -96 6.4 GTGTGTAAACGATTCCACTA
Citrobacter koseri ATCC BAA-895 CKO_02376 -54 6.4 AAGTGTAAACGATTCCACTA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_00773 -252 4.9 CAGTGGAGACGGTTACACTT
-96 6.4 AAGTGTAAACGATTCCACTA
Enterobacter sp. 638 Ent638_1250 -96 6.2 CGGTGTAACCGATTCCACTA
Yersinia pestis KIM y3043 -95 6.4 GAGTGTAAACGATTCCATTA
Edwardsiella tarda EIB202 ETAE_2564 -195 5.5 TAGTGTAAGCGATACCACAA
-95 6.4 TAGTGTAAACGATTCCATTT
Position: -113
Score: 5.5
Sequence: GGCTGTAACCGTTTCCATTG
Locus tag: APECO1_4400
APECO1_4400 -113 5.5 GGCTGTAACCGTTTCCATTG
Supported by regulated orthologs from reference regulons
Ortholog gene name: galS
Ortholog function: galactose operon repressor galS
Escherichia coli str. K-12 substr. MG1655 b2151 -113 5.5 GGCTGTAACCGTTTCCATTG
Salmonella typhimurium LT2 STM2191 -121 5.4 GGCTGTAACCGTTTCCATCC
Citrobacter koseri ATCC BAA-895 CKO_00640 -124 4.9 GCATGTAACCGTTTCCAGCC
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02589 -127 5.2 GGATGTAAACGTTTCCAGCC
Enterobacter sp. 638 Ent638_2751 -127 5.5 GGATGTAACCGTTTTCATCT
Erwinia amylovora ATCC 49946 EAM_2208 -128 4.9 GGCTGTAACCGTTTTCATGG
Serratia proteamaculans 568 Spro_1562 -102 5.4 GTATGTAAACGTTTTCTTTC
Position: -32
Score: 5.2
Sequence: GAATGTAAGCGTTTACCCAC
Locus tag: APECO1_3669
APECO1_3669 -32 5.2 GAATGTAAGCGTTTACCCAC
Supported by regulated orthologs from reference regulons
Ortholog gene name: galR
Ortholog function: galactose operon repressor galR
Escherichia coli str. K-12 substr. MG1655 b2837 -32 5.2 GAATGTAAGCGTTTACCCAC
Salmonella typhimurium LT2 STM3011 -33 5.3 TAATGTAAGCGTTTACCCAC
Citrobacter koseri ATCC BAA-895 CKO_04211 -33 5.1 AAATGTAAGCGTTTACCCAC
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_03246 -33 5.5 GTATGTAAACGCTTACCCTA
Enterobacter sp. 638 Ent638_3278 -35 5.3 GTGTGTAAACGCTTACCCCC
Erwinia amylovora ATCC 49946 EAM_2770 -35 4.9 AAATGTAAACGCTTACCCAG
Yersinia pestis KIM y3183 32 5.4 TGATGTAAGCGGTTACCCTA
Serratia proteamaculans 568 Spro_3832 -34 5.2 GAATGTAAGCGATTACCCAG
Erwinia carotovora subsp. atroseptica SCRI1043 ECA3172 -240 5.3 AAGTGTAATCGGTTACCCTA
Edwardsiella tarda EIB202 ETAE_2890 -41 5.2 TGGTGTAAACGTTTACGGTT
Position: -100
Score: 6.2
Sequence: TAGTGTAAGCGATTACACTG
Locus tag: APECO1_3578
APECO1_3578 -100 6.2 TAGTGTAAGCGATTACACTG
Supported by regulated orthologs from reference regulons
Ortholog gene name: galP
Ortholog function: galactose transporter
Escherichia coli str. K-12 substr. MG1655 b2943 -282 5 AACTGAAACCGATTACACCA
-100 6.2 TAGTGTAAGCGATTACACTG
Salmonella typhimurium LT2 STM3091 -283 4.7 TCATGAAAGCGGTTACATTC
-101 6.1 CAGTGTAAACGATTACACCA
Citrobacter koseri ATCC BAA-895 CKO_04318 -282 5.2 TAATGAAACCGTTTACCCTC
-101 6.6 TAGTGTAAACGATTACACTA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_03376 -285 4.7 AAATGAAAGCGATTACATAG
-102 5.6 TTGTGGAAACGATTACACAG
Enterobacter sp. 638 Ent638_3347 -284 5 AAATGAAAGCGATTACACCA
-102 6.3 TAGTGTAACCGATTACACCA
Erwinia amylovora ATCC 49946 EAM_2827 -170 5.6 TGTTGTAACCGGTTACATTC
Serratia proteamaculans 568 Spro_1160 -274 4.3 GTGTGATATCGGTTACATTT
-100 6.1 TTGTGTAATCGTTTCCACTA
Edwardsiella tarda EIB202 ETAE_2966 -273 5.6 AAGTGAAAACGATTACATTT
-79 6 GTATGTAAACGATTACATTT
Position: -147
Score: 4.6
Sequence: AGATGAAAGCGATTACAAAC
Locus tag: APECO1_2164
APECO1_2164 -147 4.6 AGATGAAAGCGATTACAAAC
Supported by regulated orthologs from reference regulons
Ortholog gene name: ytfQ
Ortholog function: periplasmic binding protein/LacI transcriptional regulator
Escherichia coli str. K-12 substr. MG1655 b4227 -147 4.6 AGATGAAAGCGATTACAAAC
0 4.5 ATGTGGAAACGCTTACTTAT
Citrobacter koseri ATCC BAA-895 CKO_03603 -148 4.7 GAATGAAAGCGATTACAAAG
0 4.6 ATGTGGAAGCGCTTACTTTT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_04622 -283 5.8 TTATGTAACCGTTTTCATTG
-42 4.2 ATGTGGAAGCGCTTACTTCT
Enterobacter sp. 638 Ent638_0412 -148 4.9 GAATGAAAGCGATTACAAAC
-94 4.3 TGATGTAACGCATTCCGTTA
0 4.1 ATGTGGAAGCGCTTACTACT
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