Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of AlsR regulog to Escherichia coli APEC O1

Reference regulog properties
Source regulog: AlsR - Enterobacteriales
Regulator type: Transcription factor
Regulator family: RpiR
Regulation mode: repressor
Biological process: Allose utilization
Effector: D-allose
Phylum: Gammaproteobacteria
Propagated regulon:
Target genome Escherichia coli APEC O1
Orthologous TF(s) APECO1_2361
Regulated genes 2
Built upon 5 sites [see more]
Predicted regulatory interactions in Escherichia coli APEC O1
Locus tag Position Score Sequence
Position: -231
Score: 5.3
Sequence: GATCTGTTTTACAGAGT
Locus tag: APECO1_2361
APECO1_2361 -231 5.3 GATCTGTTTTACAGAGT
Supported by regulated orthologs from reference regulons
Ortholog gene name: alsR
Ortholog function: Transcriptional regulator of D-allose utilization, RpiR family
Citrobacter koseri ATCC BAA-895 CKO_03784 -56 4.4 GGCCTGTTCTACACACC
-1 4.1 AATGAGTCAGTCAGAAT
Escherichia coli str. K-12 substr. MG1655 b4089 -264 5.3 GATCTGTTTTACAGAGT
Position: -111
Score: 5.3
Sequence: ACTCTGTAAAACAGATC
Locus tag: APECO1_2360
APECO1_2360 -111 5.3 ACTCTGTAAAACAGATC
Supported by regulated orthologs from reference regulons
Ortholog gene name: rpiB
Ortholog function: D-allose-6-phosphate isomerase (EC 5.3.1.-) / Ribose 5-phosphate isomerase B (EC 5.3.1.6)
Citrobacter koseri ATCC BAA-895 CKO_03782 -106 4.4 GGTGTGTAGAACAGGCC
Escherichia coli str. K-12 substr. MG1655 b4090 -111 5.3 ACTCTGTAAAACAGATC
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