Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
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Propagation of TrpR regulog to Escherichia coli APEC O1

Reference regulog properties
Source regulog: TrpR - Enterobacteriales
Regulator type: Transcription factor
Regulator family: TrpR
Regulation mode: repressor
Biological process: Tryptophan biosynthesis
Effector: Tryptophan
Phylum: Proteobacteria/gamma
Propagated regulon:
Target genome Escherichia coli APEC O1
Orthologous TF(s) APECO1_1986
Regulated genes 4
Built upon 44 sites [see more]
Predicted regulatory interactions in Escherichia coli APEC O1
Locus tag Position Score Sequence
Position: -79
Score: 5.6
Sequence: TGTACTAGTTTGATGGTATG
Locus tag: APECO1_1620
APECO1_1620 -79 5.6 TGTACTAGTTTGATGGTATG
Supported by regulated orthologs from reference regulons
Ortholog gene name: aroL
Ortholog function: Shikimate kinase III (EC 2.7.1.71)
Escherichia coli str. K-12 substr. MG1655 b0388 -79 5.6 TGTACTAGTTTGATGGTATG
Salmonella typhimurium LT2 STM0388 -79 5.1 TGTACTAGTTAGATGATATG
Citrobacter koseri ATCC BAA-895 CKO_02783 -136 5.4 TGTACTAGTTTGGTGGTATG
Enterobacter sp. 638 Ent638_0859 -80 5.6 CGTACTAGTTTAATGGTATT
Position: -183
Score: 6.3
Sequence: CGAACTAGTTAACTAGTACG
Locus tag: APECO1_425
APECO1_425 -183 6.3 CGAACTAGTTAACTAGTACG
Supported by regulated orthologs from reference regulons
Ortholog gene name: trpE
Ortholog function: Anthranilate synthase, aminase component (EC 4.1.3.27)
Escherichia coli str. K-12 substr. MG1655 b1264 -183 6.3 CGAACTAGTTAACTAGTACG
Salmonella typhimurium LT2 STM1723 -186 6.3 CGAACTAGTTAACTAGTACG
Citrobacter koseri ATCC BAA-895 CKO_01340 -174 6.3 CGAACTAGTTAACTAGTACG
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_01257 -198 6.3 CGAACTAGTTAACTAGTACG
Enterobacter sp. 638 Ent638_2204 -186 6.3 CGAACTAGTTAACTAGTACG
Erwinia amylovora ATCC 49946 EAM_1877 -192 6.2 CGAACCAGTTAACTAGTACA
Yersinia pestis KIM y2051 -283 6.2 TGAACCAGTTAACTAGTACA
Serratia proteamaculans 568 Spro_2667 -219 6.2 CGAACCAGTTAACTAGTACA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA2296 -231 6.2 CGAACCAGTTAACTAGTACA
Edwardsiella tarda EIB202 ETAE_1535 -222 5.6 GAAACTAGTTTACTAGTACG
Proteus mirabilis HI4320 PMI1343 -243 5.4 TAATCCAGTTTACTAGTACA
Photorhabdus luminescens subsp. laumondii TTO1 plu2462 -196 5.8 CGTTCCAGTTTACTAGTACA
Position: -66
Score: 5.3
Sequence: CGTACTCTTTAGCGAGTACA
Locus tag: APECO1_1986
APECO1_1986 -66 5.3 CGTACTCTTTAGCGAGTACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: trpR
Ortholog function: Trp operon repressor
Escherichia coli str. K-12 substr. MG1655 b4393 -66 5.3 CGTACTCTTTAGCGAGTACA
Salmonella typhimurium LT2 STM4583 -34 5.6 TGTACTCGTGTAACAGTACA
Citrobacter koseri ATCC BAA-895 CKO_03393 -97 6 CGTACTCGTTAAAGAGTACA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_04848 -65 5.7 TGTACTCGTTGAAGAGTACA
Enterobacter sp. 638 Ent638_0554 3 5.5 TGTACTcGTcAAagAGTACA
Erwinia amylovora ATCC 49946 EAM_0634 -33 6.2 TGTACTAGTTAAATAGTATG
Yersinia pestis KIM y3726 -24 6.1 TGTACTAGTTAAATAGTACT
Serratia proteamaculans 568 Spro_0676 -30 6.2 TGTACTAGTTAAATAGTATG
Erwinia carotovora subsp. atroseptica SCRI1043 ECA3899 -30 6.2 CGTACTAGTTAAATAGTATG
Edwardsiella tarda EIB202 ETAE_0543 -44 5.6 TGTACTCGTTGAATAGTTCA
Proteus mirabilis HI4320 PMI3714 -39 5.2 TGTACTAGTTTATGAGTGTG
Photorhabdus luminescens subsp. laumondii TTO1 plu0557 -34 6.2 TGTACTAGTTAAATAGTATG
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