Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of SoxR regulog to Escherichia coli APEC O1

Reference regulog properties
Source regulog: SoxR - Enterobacteriales
Regulator type: Transcription factor
Regulator family: MerR
Regulation mode: activator (repressor)
Biological process: Superoxide stress response
Effector: Paraquat
Phylum: Proteobacteria/Gamma
Propagated regulon:
Target genome Escherichia coli APEC O1
Orthologous TF(s) APECO1_2394
Regulated genes 1
Built upon 14 sites [see more]
Predicted regulatory interactions in Escherichia coli APEC O1
Locus tag Position Score Sequence
Position: -30
Score: 7.4
Sequence: TCCTCAAGTTAACTTGAGGT
Locus tag: APECO1_2394
APECO1_2394 -30 7.4 TCCTCAAGTTAACTTGAGGT
Supported by regulated orthologs from reference regulons
Ortholog gene name: soxR
Ortholog function: Redox-sensitive transcriptional activator, MerR family
Escherichia coli str. K-12 substr. MG1655 b4063 -30 7.4 TCCTCAAGTTAACTTGAGGT
Salmonella typhimurium LT2 STM4266 -30 7.4 TCCTCAAGTTAACTTGAGGT
Citrobacter koseri ATCC BAA-895 CKO_03827 -30 7.4 TCCTCAAGTTAACTTGAGGT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_04463 -57 7.4 TCCTCAAGTTAACTTGAGGT
Enterobacter sp. 638 Ent638_0267 -31 7.4 TCCTCAAGTTAACTTGAGGT
Erwinia amylovora ATCC 49946 EAM_0317 -30 7.1 TCCTCAAGTTTACTTGAGGT
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