Propagation of NarP regulog to Escherichia coli APEC O1

Reference regulog properties
Source regulog:	NarP - Enterobacteriales
Regulator type:	Transcription factor
Regulator family:	LuxR
Regulation mode:	activator (repressor)
Biological process:	Nitrate and nitrite respiration
Effector:	Nitrate; Nitrite
Phylum:	Proteobacteria/gamma
Propagated regulon:
Target genome	Escherichia coli APEC O1
Orthologous TF(s)	APECO1_4365
Regulated genes	24

Built upon 125 sites [see more]

Predicted regulatory interactions in *Escherichia coli APEC O1*
	Locus tag	Position	Score	Sequence
Position: -122 Score: 4.4 Sequence: TACCCATTATGAGTTA Locus tag: APECO1_1941
	APECO1_1941	-122	4.4	TACCCATTATGAGTTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: caiT
Ortholog function: L-carnitine/gamma-butyrobetaine antiporter
Escherichia coli str. K-12 substr. MG1655	b0040	-122	4.4	TACCCATTATGAGTTA

Position: -303 Score: 4.6 Sequence: TAACTCATAATGGGTA Locus tag: APECO1_1940
	APECO1_1940	-303	4.6	TAACTCATAATGGGTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: fixA
Ortholog function: Flavoprotein involved in anaerobic carnitine metabolism
Escherichia coli str. K-12 substr. MG1655	b0041	-365	4.6	TAACTCATAATGGGTA
Salmonella typhimurium LT2	STM0075	-365	4	TAACTCATGATGGGTA
Citrobacter koseri ATCC BAA-895	CKO_03341	-330	4.6	TAACTCATAATGGGTA

Position: -90 Score: 3.9 Sequence: TACCTCACAAAGGTTA Locus tag: APECO1_1326
	APECO1_1326	-90	3.9	TACCTCACAAAGGTTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: modA
Ortholog function: Molybdenum ABC transporter, substrate-binding protein (TC 3.A.1.8.1)
Escherichia coli str. K-12 substr. MG1655	b0763	-90	3.9	TACCTCACAAAGGTTA
Salmonella typhimurium LT2	STM0781	-91	4.2	TAATCGTTAATGGGTA
Citrobacter koseri ATCC BAA-895	CKO_02372	-90	4	TAACCTCAATTGGGTA

Position: -137 Score: 4.5 Sequence: TACCTCTCTGGCGGTA Locus tag: APECO1_1221
	APECO1_1221	-137	4.5	TACCTCTCTGGCGGTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: hcp
Ortholog function: Hydroxylamine reductase (EC 1.7.-.-)
Escherichia coli str. K-12 substr. MG1655	b0873	-143	4.5	TACCTCTCTGGCGGTA

Position: -180 Score: 3.4 Sequence: TACCGAACAATAATTA Position: -163 Score: 3.4 Sequence: TCCTCACTTACAAGTA Locus tag: APECO1_1195
	APECO1_1195	-180	3.4	TACCGAACAATAATTA
		-163	3.4	TCCTCACTTACAAGTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: dmsA
Ortholog function: Dimethyl sulfoxide reductase, chain A (EC 1.8.99.-)
Escherichia coli str. K-12 substr. MG1655	b0894	-180	3.4	TACCGAACAATAATTA
Salmonella typhimurium LT2	STM0964	-161	4.6	TACCCTATTAGGGGTA
Citrobacter koseri ATCC BAA-895	CKO_02177	-166	5.2	TACCCCTTTGGGGGTA

Position: -236 Score: 4.1 Sequence: TACCCGGAAAGAGTTA Locus tag: APECO1_340
	APECO1_340	-236	4.1	TACCCGGAAAGAGTTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: narK
Ortholog function: Nitrate/nitrite antiporter
Escherichia coli str. K-12 substr. MG1655	b1223	-236	4.1	TACCCGGAAAGAGTTA
Salmonella typhimurium LT2	STM1765	-236	4.2	TACCTATAACGAGTTA
		-126	4	TACTCATTAAGGGTAA
Citrobacter koseri ATCC BAA-895	CKO_01299	-392	4.2	TACCTATAACGAGTTA
		-282	4.5	TACTCACTAAGGGGCA

Position: -158 Score: 4.3 Sequence: TTATCCTAAAGGGGTA Locus tag: APECO1_341
	APECO1_341	-158	4.3	TTATCCTAAAGGGGTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: narG
Ortholog function: Respiratory nitrate reductase, alpha chain (EC 1.7.99.4)
Escherichia coli str. K-12 substr. MG1655	b1224	-158	4.3	TTATCCTAAAGGGGTA
Salmonella typhimurium LT2	STM1764	-159	4.3	TCCTCCCAAAGGAGTA
Citrobacter koseri ATCC BAA-895	CKO_01301	-158	4.6	TCCTCCTTAAGGGGTA

Position: -215 Score: 4.7 Sequence: TACCCAGAAGTGAGTA Locus tag: APECO1_355
	APECO1_355	-215	4.7	TACCCAGAAGTGAGTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: adhE
Ortholog function: Alcohol dehydrogenase (EC 1.1.1.1); Acetaldehyde dehydrogenase (EC 1.2.1.10)
Escherichia coli str. K-12 substr. MG1655	b1241	-215	4.7	TACCCAGAAGTGAGTA
Salmonella typhimurium LT2	STM1749	-216	4.6	TACTCAGAAGTGAGTA
Citrobacter koseri ATCC BAA-895	CKO_01318	-216	4.6	TACTCAGAAGTGAGTA
Yersinia pestis KIM	y2023	-260	4	TACCTAAGAATAGTTA
Serratia proteamaculans 568	Spro_2704	-252	4	TACCCAAGAGTAGTTA
Erwinia carotovora subsp. atroseptica SCRI1043	ECA2326	-289	4	CACCCACAAATAGGTA
Edwardsiella tarda EIB202	ETAE_1508	-239	4.4	TACCCAAGAATGAGTA

Position: 23 Score: 4.9 Sequence: TACCCCAATGTGGGTA Locus tag: APECO1_372
	APECO1_372	23	4.9	TACCCCAATGTGGGTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ompW
Ortholog function: Outer membrane protein W precursor
Escherichia coli str. K-12 substr. MG1655	b1256	-55	4.5	TACTCCAATGTAGGTA
Salmonella typhimurium LT2	STM1732	-55	4.7	TACTTCATTGTGGGTA
Citrobacter koseri ATCC BAA-895	CKO_01333	-55	4.5	TACTCCATTGTAGGTA
Yersinia pestis KIM	y2044	-43	4.7	TACTCATTTGTAGGTA
Serratia proteamaculans 568	Spro_2674	-28	4.5	TACCCGTAAGTAGGTA
Erwinia carotovora subsp. atroseptica SCRI1043	ECA2303	-56	4.9	TACCTACTTAGGGGTA
Edwardsiella tarda EIB202	ETAE_1528	-52	3.7	TCACTCAATATGGTTA
Proteus mirabilis HI4320	PMI1350	-59	4.9	TACTTATTAATGGGTA
Photorhabdus luminescens subsp. laumondii TTO1	plu2478	-55	3.8	TTCTAATATATGAGTA

Position: -92 Score: 4.7 Sequence: TAACCCCAAATGGGTA Locus tag: APECO1_670
	APECO1_670	-92	4.7	TAACCCCAAATGGGTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ynfE
Ortholog function: Dimethyl sulfoxide reductase, chain A (EC 1.8.99.-)
Escherichia coli str. K-12 substr. MG1655	b1587	-92	4.7	TAACCCAAAATGGGTA
Salmonella typhimurium LT2	STM1499	-95	5	TACTCCCAAAGGGGTA
Citrobacter koseri ATCC BAA-895	CKO_01581	-93	4.8	TACCTATAAGGGGTTA
		-20	3.8	TAACTATAATGGAGTG
Serratia proteamaculans 568	Spro_1687	-143	4.3	TACCCACTTCTGAGTA

Position: -164 Score: 4.5 Sequence: TAACCATAAAGGATTA Locus tag: APECO1_753
	APECO1_753	-164	4.5	TAACCATAAAGGATTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ydhY
Ortholog function: Predicted oxidoreductase, FeS cluster subunit
Escherichia coli str. K-12 substr. MG1655	b1674	-163	4.5	TAACCATAAAGGATTA
Citrobacter koseri ATCC BAA-895	CKO_01699	-111	4.4	TAACTCTTTGGGATTA

Position: -129 Score: 4.6 Sequence: TACCCCGATCGGGGTA Locus tag: APECO1_4351
	APECO1_4351	-129	4.6	TACCCCGATCGGGGTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: napF
Ortholog function: Periplasmic nitrate reductase, ferredoxin-type protein NapF
Escherichia coli str. K-12 substr. MG1655	b2208	-129	4.6	TACCCCGATCGGGGTA
Salmonella typhimurium LT2	STM2261	-132	4.8	TACCTCTATCGGGGTA
Yersinia pestis KIM	y1442	-158	4.3	TACTCATTATTCGGTA
Serratia proteamaculans 568	Spro_3488	-322	4.7	TACCCCTTTAGGGGGA
Erwinia carotovora subsp. atroseptica SCRI1043	ECA1898	-111	4.4	TACCTCTAAAGGGTGA
Edwardsiella tarda EIB202	ETAE_1114	-156	3.9	TAACCCAAAAGAGGAA

Position: -104 Score: 4.3 Sequence: TACCTGATAGTGGGTA Locus tag: APECO1_4269
	APECO1_4269	-104	4.3	TACCTGATAGTGGGTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: yfbV
Ortholog function: Predicted membrane protein
Escherichia coli str. K-12 substr. MG1655	b2295	-104	4.3	TACCTGATAGTGGGTA
Salmonella typhimurium LT2	STM2336	-104	4.3	TACCTGATAGTGGGTA
Citrobacter koseri ATCC BAA-895	CKO_00500	-105	4.3	TACCTGATAGTGGGTA

Position: -22 Score: 4.2 Sequence: TACTTTTCAAGGAGTA Locus tag: APECO1_4093
	APECO1_4093	-22	4.2	TACTTTTCAAGGAGTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: talA
Ortholog function: Transaldolase (EC 2.2.1.2)
Escherichia coli str. K-12 substr. MG1655	b2464	-22	4.2	TACTTTTCAAGGAGTA
Salmonella typhimurium LT2	STM2473	-22	4.2	TACTTTTCAAGGAGTA
Citrobacter koseri ATCC BAA-895	CKO_00330	-22	4.2	TACTTTTCAAGGAGTA

Position: -118 Score: 4.5 Sequence: TACTCATTAATGAGCA Locus tag: APECO1_3816
	APECO1_3816	-118	4.5	TACTCATTAATGAGCA
Supported by regulated orthologs from reference regulons
Ortholog gene name: norV
Ortholog function: Nitric oxide reductase, flavorubredoxin (EC 1.18.1.-)
Escherichia coli str. K-12 substr. MG1655	b2710	-118	4.6	TACTCATTAATGGGCA
Citrobacter koseri ATCC BAA-895	CKO_04064	-118	4.2	TACCATTTTATGAGTA

Position: -101 Score: 5.2 Sequence: TACCCCTTAAGGAGTA Locus tag: APECO1_3091
	APECO1_3091	-101	5.2	TACCCCTTAAGGAGTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: nirB
Ortholog function: Nitrite reductase large subunit (EC 1.7.1.4)
Escherichia coli str. K-12 substr. MG1655	b3365	-101	5.1	TACCCATTAAGGAGTA
Salmonella typhimurium LT2	STM3474	-101	5	TACCCATTAAGAGGTA
Citrobacter koseri ATCC BAA-895	CKO_04789	-101	5.2	TACCTCTTAAGGAGTA
Yersinia pestis KIM	y3945	-100	4.5	TACCACCTTAGAGGTA
Serratia proteamaculans 568	Spro_4595	-197	4.5	TACTCCCGAATGGGTA
		-101	4.5	TACCACATTAGAGGTA
Erwinia carotovora subsp. atroseptica SCRI1043	ECA4079	-100	4.8	TACCCACAAAGAAGTA
Proteus mirabilis HI4320	PMI1479	-134	4.1	TACTACTTTGGTAGTA

Position: -19 Score: 4.6 Sequence: TACCTCGAAGGGAGCA Locus tag: APECO1_2724
	APECO1_2724	-19	4.6	TACCTCGAAGGGAGCA
Supported by regulated orthologs from reference regulons
Ortholog gene name: atpI
Ortholog function: ATP synthase maturation
Escherichia coli str. K-12 substr. MG1655	b3739	-31	4.6	TACCTCGAAGGGAGCA
Salmonella typhimurium LT2	STM3872	-30	4.5	TACCTCGAAGTGAGCA
Citrobacter koseri ATCC BAA-895	CKO_00079	-30	4.6	TACCTCGAAGGGAGCA
Serratia proteamaculans 568	Spro_0001	-33	4.6	TACCTCCTCAGGGGTA
Erwinia carotovora subsp. atroseptica SCRI1043	ECA4519	-33	4.3	TACCTCTGAAAAGGTA
Edwardsiella tarda EIB202	ETAE_3526	-156	4.4	TACCTCCTGGGGGGTA

Position: -174 Score: 4.5 Sequence: TAACTCTAAAGTGGTA Locus tag: APECO1_2385
	APECO1_2385	-174	4.5	TAACTCTAAAGTGGTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: nrfA
Ortholog function: Nitrite reductase, cytochrome c(552)
Escherichia coli str. K-12 substr. MG1655	b4070	-175	4.5	TAACTCTAAAGTGGTA
Salmonella typhimurium LT2	STM4277	-177	4.5	TAACTCTAAAGTGGTA
Citrobacter koseri ATCC BAA-895	CKO_03814	-180	4.5	TAACTCTAAAGTGGTA

Position: -101 Score: 4.7 Sequence: TACCTATAAAGGAGCA Locus tag: APECO1_2235
	APECO1_2235	-101	4.7	TACCTATAAAGGAGCA
Supported by regulated orthologs from reference regulons
Ortholog gene name: frdA
Ortholog function: Fumarate reductase subunit A (EC 1.3.5.4)
Escherichia coli str. K-12 substr. MG1655	b4154	-101	4.7	TACCTATAAAGGAGCA
Salmonella typhimurium LT2	STM4343	-100	4.7	TACCCATAAAGGAGCA
Citrobacter koseri ATCC BAA-895	CKO_03678	-60	4.7	TACCTATAAAGGAGCA

Position: -79 Score: 3.7 Sequence: TGCTACGTAAGGGTTA Locus tag: APECO1_2177
	APECO1_2177	-79	3.7	TGCTACGTAAGGGTTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: dnrN
Ortholog function: Nitric oxide-dependent regulator DnrN
Escherichia coli str. K-12 substr. MG1655	b4209	-79	3.7	TGCTACGTAAGGGTTA
Salmonella typhimurium LT2	STM4399	-78	3.9	CACCCCGAAAGAGTTA
Citrobacter koseri ATCC BAA-895	CKO_03623	-78	3.9	TGACCCGAAAGGGTTA
Yersinia pestis KIM	y0652	-108	4.4	TACCCACTTGGAGTTA
Erwinia carotovora subsp. atroseptica SCRI1043	ECA3606	-81	4.8	TACCTCGTAAGCGGTA

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Propagation of NarP regulog to Escherichia coli APEC O1

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --