Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
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Propagation of BirA regulog to Escherichia coli APEC O1

Reference regulog properties
Source regulog: BirA - Enterobacteriales
Regulator type: Transcription factor
Regulator family: BirA
Regulation mode: repressor
Biological process: Biotin biosynthesis
Effector: Biotin
Phylum: Proteobacteria/gamma
Propagated regulon:
Target genome Escherichia coli APEC O1
Orthologous TF(s) APECO1_2494
Regulated genes 2
Built upon 27 sites [see more]
Predicted regulatory interactions in Escherichia coli APEC O1
Locus tag Position Score Sequence
Position: -41
Score: 9.1
Sequence: TCGTAAACC-(16)-GGTTTACAA
Locus tag: APECO1_1315
APECO1_1315 -41 9.1 TCGTAAACC-(16)-GGTTTACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: bioA
Ortholog function: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62)
Escherichia coli str. K-12 substr. MG1655 b0774 -41 9.4 TTGTAAACC-(16)-GGTTTACAA
Salmonella typhimurium LT2 STM0793 -41 9.1 TCGTAAACC-(16)-GGTTTACAA
Citrobacter koseri ATCC BAA-895 CKO_02354 -41 9.1 TCGTAAACC-(16)-GGTTTACAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_00799 -41 9.4 TTGTAAACC-(16)-GGTTTACAA
Enterobacter sp. 638 Ent638_1265 -22 8.7 TgGTAAACC-(16)-GGTTTACAA
Erwinia amylovora ATCC 49946 EAM_1209 -41 9 TTGTAAACT-(15)-GGTTTACAA
Yersinia pestis KIM y3032 -43 9 CTGTCAACC-(16)-GGTTTACAA
Serratia proteamaculans 568 Spro_1310 -17 9 cTGTcAACC-(16)-GGTTTACAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA2826 -43 8.7 CTGTCAACC-(16)-GGTTTACGA
Edwardsiella tarda EIB202 ETAE_2555 -141 8.8 ATGTCAACC-(16)-GGTTTACAG
Proteus mirabilis HI4320 PMI0602 -52 8.4 ATGTCAACT-(16)-GGTTTACAT
Photorhabdus luminescens subsp. laumondii TTO1 plu1484 -41 8.4 CTGTCAACC-(15)-GGTTTACGT
Position: -80
Score: 9.1
Sequence: TTGTAAACC-(16)-GGTTTACGA
Locus tag: APECO1_1314
APECO1_1314 -80 9.1 TTGTAAACC-(16)-GGTTTACGA
Supported by regulated orthologs from reference regulons
Ortholog gene name: bioB
Ortholog function: Biotin synthase (EC 2.8.1.6)
Escherichia coli str. K-12 substr. MG1655 b0775 -79 9.4 TTGTAAACC-(16)-GGTTTACAA
Salmonella typhimurium LT2 STM0794 -79 9.1 TTGTAAACC-(16)-GGTTTACGA
Citrobacter koseri ATCC BAA-895 CKO_02353 -79 9.1 TTGTAAACC-(16)-GGTTTACGA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_00800 -230 9.4 TTGTAAACC-(16)-GGTTTACAA
Enterobacter sp. 638 Ent638_1266 -79 8.7 TTGTAAACC-(16)-GGTTTACCA
Erwinia amylovora ATCC 49946 EAM_1210 -80 9 TTGTAAACC-(15)-AGTTTACAA
Yersinia pestis KIM y3031 -89 9 TTGTAAACC-(16)-GGTTGACAG
Serratia proteamaculans 568 Spro_1311 -88 9 TTGTAAACC-(16)-GGTTgACAg
Erwinia carotovora subsp. atroseptica SCRI1043 ECA2825 -86 8.7 TCGTAAACC-(16)-GGTTGACAG
Edwardsiella tarda EIB202 ETAE_2554 -94 8.8 CTGTAAACC-(16)-GGTTGACAT
Proteus mirabilis HI4320 PMI0603 -85 8.4 ATGTAAACC-(16)-AGTTGACAT
Photorhabdus luminescens subsp. laumondii TTO1 plu1485 -86 8.4 ACGTAAACC-(15)-GGTTGACAG
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