Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
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Propagation of LexA regulog to Xenorhabdus bovienii SS-2004

Reference regulog properties
Source regulog: LexA - Enterobacteriales
Regulator type: Transcription factor
Regulator family: LexA
Regulation mode: repressor
Biological process: SOS response
Effector: DNA damage
Phylum: Proteobacteria/gamma
Propagated regulon:
Target genome Xenorhabdus bovienii SS-2004
Orthologous TF(s) XBJ1_3997
Regulated genes 12
Built upon 265 sites [see more]
Predicted regulatory interactions in Xenorhabdus bovienii SS-2004
Locus tag Position Score Sequence
Position: -63
Score: 5.3
Sequence: ACTTGTATATTTATACAGTT
Locus tag: XBJ1_0242
XBJ1_0242 -63 5.3 ACTTGTATATTTATACAGTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: tag
Ortholog function: DNA-3-methyladenine glycosylase I
Serratia proteamaculans 568 Spro_0064 -34 5.3 TACTGTAAATAAACACAGCA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA0082 -115 4.9 CGCTGGTTGCATATACAGCA
Proteus mirabilis HI4320 PMI2853 -78 4.7 ACATGTGTTTTTATACAGTA
Photorhabdus luminescens subsp. laumondii TTO1 plu0292 -65 5.1 ACTTGTATATCTATACAGTT
Position: -39
Score: 6.2
Sequence: TACTGTATAAATATACAGTT
Locus tag: XBJ1_0777
XBJ1_0777 -39 6.2 TACTGTATAAATATACAGTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: sulA
Ortholog function: Cell division inhibitor sulA
Escherichia coli str. K-12 substr. MG1655 b0958 -42 5.6 TACTGTACATCCATACAGTA
Salmonella typhimurium LT2 STM1071 -41 6.2 TACTGTATGAATATACAGTA
Citrobacter koseri ATCC BAA-895 CKO_02110 -41 6 TACTGTATATCCATACAGTA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_00987 -39 6 TACTGTATATGCATACAGTA
Enterobacter sp. 638 Ent638_1470 -34 6.2 TACTGTATATTCATACAGTA
Erwinia amylovora ATCC 49946 EAM_1378 -40 5.7 TACTGTATATCCATACAGTC
Yersinia pestis KIM y2734 -39 6.1 TACTGTATATACATACAGCA
Serratia proteamaculans 568 Spro_1755 -41 5.9 TACTGTATAAACATACAGTG
Erwinia carotovora subsp. atroseptica SCRI1043 ECA1752 -41 6.1 TACTGTATGTTCATACAGTA
Edwardsiella tarda EIB202 ETAE_1269 -115 5.9 TACTGTATAAGCATACAGTA
Proteus mirabilis HI4320 PMI0786 -39 6.3 TACTGTATATACATACAGTA
Photorhabdus luminescens subsp. laumondii TTO1 plu1776 -40 6 TACTGTATATTAATACAGTT
Position: -83
Score: 5.5
Sequence: TCCTGTTTATGCATACAGTT
Locus tag: XBJ1_0889
XBJ1_0889 -83 5.5 TCCTGTTTATGCATACAGTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ftsK
Ortholog function: DNA translocase FtsK
Escherichia coli str. K-12 substr. MG1655 b0890 -96 5 TCCTGTTAATCCATACAGCA
Salmonella typhimurium LT2 STM0960 -96 5 TCCTGTTAATCCATACAGCA
Citrobacter koseri ATCC BAA-895 CKO_02181 -39 5 TCCTGTTAATCCATACAGCA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_00922 -97 5 TCCTGTTAATCCATACAGCA
Enterobacter sp. 638 Ent638_1414 -96 5 TCCTGTTAATCCATACAGCA
Erwinia amylovora ATCC 49946 EAM_1329 -80 4.9 TCCTGTGAATTCATACAGGT
Yersinia pestis KIM y2800 -86 5.7 TCCTGTTTATTCATACAGTT
Serratia proteamaculans 568 Spro_1683 -85 5.7 TCCTGTTTATTCATACAGTT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA2647 -78 5 TCCTGTGAATTTATACAGTC
Edwardsiella tarda EIB202 ETAE_2199 -114 5.4 TCCTGTGTATGTATACAGTT
Proteus mirabilis HI4320 PMI0697 -83 5.6 TCCTGTTTATGTATACAGTT
Photorhabdus luminescens subsp. laumondii TTO1 plu1601 -81 5.5 TCCTGTTTATGCATACAGTT
Position: -103
Score: 5
Sequence: CACTGTATAAATAACCACTA
Locus tag: XBJ1_1795
XBJ1_1795 -103 5 CACTGTATAAATAACCACTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: polB
Ortholog function: DNA polymerase II (EC 2.7.7.7)
Escherichia coli str. K-12 substr. MG1655 b0060 -73 4.3 GACTGTATAAAACCACAGCC
Salmonella typhimurium LT2 STM0097 -73 4.6 gcCTGTAcAaAataACAGTA
Citrobacter koseri ATCC BAA-895 CKO_03322 -73 4.7 ACCTGTATAAAACCACAGCA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_00059 -75 4.2 ACCTGTATAAAACCCCAGCG
Enterobacter sp. 638 Ent638_0607 30 4.6 ACCTGTATAAAATCCCAGCA
Erwinia amylovora ATCC 49946 EAM_0673 -53 4.9 TACTGTATAAATAAACATGC
Position: -77
Score: 4.8
Sequence: TGCTGGATATACGTCCAGCT
Locus tag: XBJ1_2266
XBJ1_2266 -77 4.8 TGCTGGATATACGTCCAGCT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ruvA
Ortholog function: Holliday junction helicase subunit A
Escherichia coli str. K-12 substr. MG1655 b1861 -69 5 CGCTGGATATCTATCCAGCA
Salmonella typhimurium LT2 STM1895 -71 4.8 ATCTGGATAAACATCCAGTC
Citrobacter koseri ATCC BAA-895 CKO_01099 -70 4.6 GGCTGGATATCTATCCAGCC
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02376 -69 4.6 GGCTGGATATCTATCCAGCC
Enterobacter sp. 638 Ent638_2430 -69 4.6 GGCTGGATAAACATCCAGCC
Erwinia amylovora ATCC 49946 EAM_2004 -68 5 AGCTGGATATCTATCCAGCT
Yersinia pestis KIM y2253 -244 4.4 GGCTGGATATCCATCCAGCC
Serratia proteamaculans 568 Spro_2777 -91 4.6 GGCTGGATATTCATCCAGCC
Erwinia carotovora subsp. atroseptica SCRI1043 ECA2492 -84 4.9 TGCTGGATATTCATCCAGCC
Edwardsiella tarda EIB202 ETAE_1439 -74 4.6 GGCTGGATATTCATCCAGCC
Proteus mirabilis HI4320 PMI1115 -68 4.5 GGCTGGATATACGTCCAGCT
Photorhabdus luminescens subsp. laumondii TTO1 plu2111 -85 4.6 GGCTGGATATGCATCCAGCT
Position: -49
Score: 5.7
Sequence: CACTGTATGTATAAACAGCA
Locus tag: XBJ1_2548
XBJ1_2548 -49 5.7 CACTGTATGTATAAACAGCA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ydjM
Ortholog function: membrane-bound metal-dependent hydrolase
Escherichia coli str. K-12 substr. MG1655 b1728 -52 4.4 CACTGTATAAAAATCCTATA
-34 4.7 TACTGTACGTATCGACAGTT
Salmonella typhimurium LT2 STM1321 -52 4.4 TACTGTATAAAAACCCTATA
-34 5.2 TACTGTATGAATTGACAGTT
Citrobacter koseri ATCC BAA-895 CKO_01754 -52 4.4 TACTGTATAAAAACCCTATA
-34 5.2 TACTGTATGAATTGACAGTT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_01239 -34 5 TACTGTATGAATCGACAGTT
Enterobacter sp. 638 Ent638_1715 -34 5.2 TACTGTATGAATTGACAGTT
Erwinia amylovora ATCC 49946 EAM_1619 -56 4.3 TACTGTATATATTCCCTATA
-38 4.8 TACTGGATGCATTGACAGTT
Yersinia pestis KIM y1879 -39 5 TACTGGATAAATCAACAGCT
Serratia proteamaculans 568 Spro_2124 -39 5.4 TACTGGATAAATTAACAGTT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA2409 -36 5.4 TACTGTATAAAATAACAGTT
Edwardsiella tarda EIB202 ETAE_1569 -109 5.5 TTCTGTATATTTATACAGCA
Proteus mirabilis HI4320 PMI1020 -54 5.2 CACTGTATAAATGAACAGCA
Photorhabdus luminescens subsp. laumondii TTO1 plu2679 -37 5 GACTGTATGGATAGACAGTT
Position: -77
Score: 5.2
Sequence: TACTGTATAAAGAACCAGTT
Locus tag: XBJ1_3161
XBJ1_3161 -77 5.2 TACTGTATAAAGAACCAGTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: recN
Ortholog function: DNA repair protein RecN
Escherichia coli str. K-12 substr. MG1655 b2616 -68 5.7 TACTGTATATAAAACCAGTT
-46 4.9 TACTGTACACAATAACAGTA
-28 4.7 TAATGGTTTTTCATACAGGA
Salmonella typhimurium LT2 STM2684 -68 5.6 TACTGTATAAAAAACCAGTT
-46 5.3 TACTGTATTTAATTACAGTC
-28 4.5 TCATGGTTTTTCATACAGGA
Citrobacter koseri ATCC BAA-895 CKO_03938 -68 5.6 TACTGTATAAAAAACCAGTT
-46 5.1 TACTGTATGTAATCACAGTC
-28 4.5 TCATGGTTTTTCATACAGGA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02938 -68 5.2 TACTGGATAAAAAACCAGTC
-46 5.2 TACTGTACGAAAACACAGTA
-28 4.9 TATTGGTTTTTCATACAGGA
Enterobacter sp. 638 Ent638_3096 -68 5.6 TACTGTATAAAAAACCAGTT
-46 5.8 TACTGTATAGAAATACAGTT
Erwinia amylovora ATCC 49946 EAM_2529 -68 5.7 TACTGTTTATAAAACCAGTA
-46 4.3 TACTGTATGAAAAACCATAT
-28 4.8 ATCTGTGTTTTCATACAGGA
Yersinia pestis KIM y3075 39 5.5 TACTGTATATAAAACCAGTC
61 4.5 TACTGTGTTCAAATACAGAC
Serratia proteamaculans 568 Spro_3686 -68 5.5 TACTGTATATAAAACCAGTC
-46 5 TACTGTATGAAACCACAGTT
-28 4.5 TTATGTATTTATACACAGGA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA0840 -61 5.7 TACTGTATATAAAACCAGTT
-39 5.4 TACTGTATGTAAACACAGTC
Edwardsiella tarda EIB202 ETAE_2737 -68 5.6 TACTGTATAAAAAACCAGTT
-46 4.6 TACTGGCATTAAACACAGTA
Proteus mirabilis HI4320 PMI1902 -66 5.6 TACTGTATAAAAAACCAGTT
-44 5.1 TACTGTATGTAATTACAGAT
Photorhabdus luminescens subsp. laumondii TTO1 plu3374 -68 5.6 TACTGTATAAAAAACCAGTT
-46 4.8 TACTGTATGAAGATACAGAG
-28 4.5 AGGTGTTTTTATACACAGGA
Position: -100
Score: 5.8
Sequence: TGCTGTATGATTATACAGTA
Locus tag: XBJ1_3287
XBJ1_3287 -100 5.8 TGCTGTATGATTATACAGTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: recA
Ortholog function: Recombinase A
Escherichia coli str. K-12 substr. MG1655 b2699 -79 5.7 TACTGTATGAGCATACAGTA
Salmonella typhimurium LT2 STM2829 -84 5.7 TACTGTATGAGCATACAGTA
Citrobacter koseri ATCC BAA-895 CKO_04050 -96 5.5 TACTGTATGACTGTACAGTA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_03031 -90 5.8 TACTGTATGACCATACAGTA
Enterobacter sp. 638 Ent638_3174 -92 5.9 TACTGTATGACTATACAGTA
Erwinia amylovora ATCC 49946 EAM_2640 -88 6.1 TACTGTATGATTATACAGTA
Yersinia pestis KIM y0881 -102 5.6 TACTGTATGATTGTACAGTA
Serratia proteamaculans 568 Spro_0841 -100 5.8 TACTGTATGACCATACAGTA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA3369 -101 5.7 TGCTGTATGTGTATACAGTA
Edwardsiella tarda EIB202 ETAE_2861 -63 5.7 TACTGTATGAGCATACAGTA
Proteus mirabilis HI4320 PMI0375 -102 6.1 TACTGTATGATTATACAGTA
Photorhabdus luminescens subsp. laumondii TTO1 plu1249 -100 5.8 TGCTGTATGATTATACAGTA
Position: 4
Score: 5.8
Sequence: AGCTGTATATTTATACAGTT
Locus tag: XBJ1_3302
XBJ1_3302 4 5.8 AGCTGTATATTTATACAGTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: dinB
Ortholog function: DNA polymerase IV (EC 2.7.7.7)
Escherichia coli str. K-12 substr. MG1655 b0231 -34 4.8 CACTGTATACTTTACCAGTG
Salmonella typhimurium LT2 STM0313 -35 5.4 TACTGTACACTTAAACAGTA
Citrobacter koseri ATCC BAA-895 CKO_02960 -35 5.8 TACTGTATACTTAAACAGTA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_00247 1 5.2 TGCTGTATGGGTATACAGTG
Enterobacter sp. 638 Ent638_0762 -37 5.8 TACTGTATACTTATCCAGTA
Erwinia amylovora ATCC 49946 EAM_0894 -36 5.4 GACTGTATACTTATCCAGTA
Yersinia pestis KIM y0959 -41 5.3 GACTGTATACTTATACAGCT
Serratia proteamaculans 568 Spro_0962 -35 5.7 GCCTGTATATTTATACAGTA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA3468 -36 5.5 ATCTGTATATTCATACAGTA
Edwardsiella tarda EIB202 ETAE_0788 -42 5.6 TGCTGTATACTCATACAGTA
Proteus mirabilis HI4320 PMI0362 -39 6.1 TACTGTATATTTAAACAGTA
Photorhabdus luminescens subsp. laumondii TTO1 plu1239 -42 4.8 TTATGTATGTTTATACAGTT
Position: -82
Score: 5.1
Sequence: TACTGTATATCCACTCAGCA
Locus tag: XBJ1_3903
XBJ1_3903 -82 5.1 TACTGTATATCCACTCAGCA
Supported by regulated orthologs from reference regulons
Ortholog gene name: uvrA
Ortholog function: excinuclease ABC subunit A
Escherichia coli str. K-12 substr. MG1655 b4058 -103 5.5 TACTGTATATTCATTCAGGT
Salmonella typhimurium LT2 STM4254 -100 5.7 TACTGTATATTCAAACAGGT
Citrobacter koseri ATCC BAA-895 CKO_03843 -102 5.3 TACTGTATATCCATTCAGGT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_04445 -105 5.5 TACTGTATATTCATTCAGGT
Enterobacter sp. 638 Ent638_0261 -100 5.7 TACTGTATATTCAAACAGGT
Erwinia amylovora ATCC 49946 EAM_0307 -101 4.5 CACTGGTTATCCATTCAGGC
Yersinia pestis KIM y0580 -318 4.8 CACTGGATATCCATTCAGGT
Serratia proteamaculans 568 Spro_4440 -140 5.2 TACTGGATATTCATTCAGGT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA3689 -107 5.5 TACTGGATATTCATTCAGTT
Edwardsiella tarda EIB202 ETAE_3184 -92 5.3 TACTGGATATCCATTCAGTT
Proteus mirabilis HI4320 PMI2746 -84 5.3 TACTGTATATCCATTCAGCT
Photorhabdus luminescens subsp. laumondii TTO1 plu4350 -209 5.3 TACTGTATATCTAATCAGTC
Position: -26
Score: 5.2
Sequence: GACTGTATAAACAAACAGGG
Locus tag: XBJ1_3997
XBJ1_3997 -26 5.2 GACTGTATAAACAAACAGGG
Supported by regulated orthologs from reference regulons
Ortholog gene name: lexA
Ortholog function: SOS-response repressor and protease LexA (EC 3.4.21.88)
Escherichia coli str. K-12 substr. MG1655 b4043 -47 5.1 TGCTGTATATACTCACAGCA
-26 5.2 AACTGTATATACACCCAGGG
Salmonella typhimurium LT2 STM4237 -47 5.2 AACTGTATATACTCACAGCA
-26 4.4 GATTGTATATACACCCAGGG
Citrobacter koseri ATCC BAA-895 CKO_03872 -47 5 AGCTGTATATACTCACAGCA
-26 5.2 AACTGTATATACACCCAGGG
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_04431 -47 5 AGCTGTATATACTCACAGCA
-26 5.2 AACTGTATATACACCCAGGG
Enterobacter sp. 638 Ent638_0247 -47 5 GACTGTATATACTCACAGCA
-26 5.2 AACTGTATATACACCCAGGG
Erwinia amylovora ATCC 49946 EAM_0264 -46 4.9 ACCTGTATATACTCACAGTC
-26 5 GACTGTATAAACAACCAGGG
Yersinia pestis KIM y0572 -47 5 AGCTGTATATACTCACAGCA
-26 5.4 AACTGTATAAACAAACAGGG
Serratia proteamaculans 568 Spro_4460 -47 5 ACCTGTATATACTCACAGCA
-26 5.2 GACTGTATAAACAAACAGGG
Erwinia carotovora subsp. atroseptica SCRI1043 ECA0630 -47 5 ACCTGTATATACTCACAGCA
-26 5 GACTGTATAAACAACCAGGG
Edwardsiella tarda EIB202 ETAE_0230 -47 5 ACCTGTATATACTCACAGCA
-26 5 AACTGTATAAACGAACAGGG
Proteus mirabilis HI4320 PMI2749 -47 4.9 ACCTGTATATACTCACAGTC
-26 5.2 GACTGTATAAACAAACAGGG
Photorhabdus luminescens subsp. laumondii TTO1 plu4374 -26 5.2 GACTGTATAAACAAACAGGG
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