Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of NarP regulog to Erwinia carotovora subsp. atroseptica SCRI1043

Reference regulog properties
Source regulog: NarP - Enterobacteriales
Regulator type: Transcription factor
Regulator family: LuxR
Regulation mode: activator (repressor)
Biological process: Nitrate and nitrite respiration
Effector: Nitrate; Nitrite
Phylum: Proteobacteria/gamma
Propagated regulon:
Target genome Erwinia carotovora subsp. atroseptica SCRI1043
Orthologous TF(s) ECA1901
Regulated genes 16
Built upon 125 sites [see more]
Predicted regulatory interactions in Erwinia carotovora subsp. atroseptica SCRI1043
Locus tag Position Score Sequence
Position: -122
Score: 4.3
Sequence: TACCCCTTTGTAGGTG
Locus tag: ECA1408
ECA1408 -122 4.3 TACCCCTTTGTAGGTG
Supported by regulated orthologs from reference regulons
Ortholog gene name: fdnG
Ortholog function: Formate dehydrogenase N, alpha subunit (EC 1.2.1.2)
Erwinia carotovora subsp. atroseptica SCRI1043 ECA1408 -122 4.3 TACCCCTTTGTAGGTG
Position: -170
Score: 4.2
Sequence: TAACCACAATTGAGTA
Locus tag: ECA1474
ECA1474 -170 4.2 TAACCACAATTGAGTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: yeaR
Ortholog function: Conserved hypothetical protein
Citrobacter koseri ATCC BAA-895 CKO_01824 -234 3.7 TAACCAATAAATGGTA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA1474 -170 4.2 TAACCACAATTGAGTA
Position: -86
Score: 4.6
Sequence: TAACCCTTTAGGGTTA
Locus tag: ECA1882
ECA1882 -86 4.6 TAACCCTTTAGGGTTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ccmA
Ortholog function: ABC transporter involved in cytochrome c biogenesis, ATPase component CcmA
Escherichia coli str. K-12 substr. MG1655 b2201 -129 4.6 TACCCCGATCGGGGTA
Salmonella typhimurium LT2 STM2254 -132 4.8 TACCTCTATCGGGGTA
Citrobacter koseri ATCC BAA-895 CKO_00574 -612 4.6 TACCCCAATCGGGGTA
Yersinia pestis KIM y1567 -112 4.8 TACCTCTATAAGGGTA
Serratia proteamaculans 568 Spro_3391 -49 4.9 TACCCCTATTGGAGTA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA1882 -86 4.6 TAACCCTTTAGGGTTA
Edwardsiella tarda EIB202 ETAE_2461 -64 4.4 TACCCCGAATGAGTTA
Position: -111
Score: 4.4
Sequence: TACCTCTAAAGGGTGA
Locus tag: ECA1898
ECA1898 -111 4.4 TACCTCTAAAGGGTGA
Supported by regulated orthologs from reference regulons
Ortholog gene name: napF
Ortholog function: Periplasmic nitrate reductase, ferredoxin-type protein NapF
Escherichia coli str. K-12 substr. MG1655 b2208 -129 4.6 TACCCCGATCGGGGTA
Salmonella typhimurium LT2 STM2261 -132 4.8 TACCTCTATCGGGGTA
Yersinia pestis KIM y1442 -158 4.3 TACTCATTATTCGGTA
Serratia proteamaculans 568 Spro_3488 -322 4.7 TACCCCTTTAGGGGGA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA1898 -111 4.4 TACCTCTAAAGGGTGA
Edwardsiella tarda EIB202 ETAE_1114 -156 3.9 TAACCCAAAAGAGGAA
Position: -217
Score: 4.2
Sequence: CACTCCTTAATGAGTA
Position: -106
Score: 4.7
Sequence: TACTCACTAGTGGGTA
Locus tag: ECA2029
ECA2029 -217 4.2 CACTCCTTAATGAGTA
-106 4.7 TACTCACTAGTGGGTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: narX
Ortholog function: Nitrate/nitrite sensor protein NarX (EC 2.7.3.-)
Escherichia coli str. K-12 substr. MG1655 b1222 -228 4 TTACCCATAGTGAGTA
-118 3.8 TAACTCTTTCCGGGTA
Salmonella typhimurium LT2 STM1766 -230 4.3 TTACCCTTAATGAGTA
-120 4.5 TAACTCGTTATAGGTA
Citrobacter koseri ATCC BAA-895 CKO_01297 -249 4.4 TGCCCCTTAGTGAGTA
-139 4.5 TAACTCGTTATAGGTA
Serratia proteamaculans 568 Spro_2899 -138 4.7 TACTTCGTTAGAGGTA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA2029 -217 4.2 CACTCCTTAATGAGTA
-106 4.7 TACTCACTAGTGGGTA
Proteus mirabilis HI4320 PMI3569 -73 4.5 TACTCCCTTTGGAGTA
Position: -246
Score: 4.8
Sequence: TACCCACTAGTGAGTA
Locus tag: ECA2030
ECA2030 -246 4.8 TACCCACTAGTGAGTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: narK
Ortholog function: Nitrate/nitrite antiporter
Erwinia carotovora subsp. atroseptica SCRI1043 ECA2030 -246 4.8 TACCCACTAGTGAGTA
-135 4.3 TACTCATTAAGGAGTG
Position: -293
Score: 3.7
Sequence: TACCTCTAAATAGTCG
Position: -194
Score: 4.3
Sequence: TAATTCTTTAGTGGTA
Locus tag: ECA2031
ECA2031 -293 3.7 TACCTCTAAATAGTCG
-194 4.3 TAATTCTTTAGTGGTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: narG
Ortholog function: Respiratory nitrate reductase, alpha chain (EC 1.7.99.4)
Serratia proteamaculans 568 Spro_2883 -193 3.8 TGATACTTTAGGGGTA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA2031 -194 4.3 TAATTCTTTAGTGGTA
Proteus mirabilis HI4320 PMI3571 -237 4.8 TACTCCAAAGGGAGTA
Position: -56
Score: 4.9
Sequence: TACCTACTTAGGGGTA
Locus tag: ECA2303
ECA2303 -56 4.9 TACCTACTTAGGGGTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ompW
Ortholog function: Outer membrane protein W precursor
Escherichia coli str. K-12 substr. MG1655 b1256 -55 4.5 TACTCCAATGTAGGTA
Salmonella typhimurium LT2 STM1732 -55 4.7 TACTTCATTGTGGGTA
Citrobacter koseri ATCC BAA-895 CKO_01333 -55 4.5 TACTCCATTGTAGGTA
Yersinia pestis KIM y2044 -43 4.7 TACTCATTTGTAGGTA
Serratia proteamaculans 568 Spro_2674 -28 4.5 TACCCGTAAGTAGGTA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA2303 -56 4.9 TACCTACTTAGGGGTA
Edwardsiella tarda EIB202 ETAE_1528 -52 3.7 TCACTCAATATGGTTA
Proteus mirabilis HI4320 PMI1350 -59 4.9 TACTTATTAATGGGTA
Photorhabdus luminescens subsp. laumondii TTO1 plu2478 -55 3.8 TTCTAATATATGAGTA
Position: -289
Score: 4
Sequence: CACCCACAAATAGGTA
Locus tag: ECA2326
ECA2326 -289 4 CACCCACAAATAGGTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: adhE
Ortholog function: Alcohol dehydrogenase (EC 1.1.1.1); Acetaldehyde dehydrogenase (EC 1.2.1.10)
Escherichia coli str. K-12 substr. MG1655 b1241 -215 4.7 TACCCAGAAGTGAGTA
Salmonella typhimurium LT2 STM1749 -216 4.6 TACTCAGAAGTGAGTA
Citrobacter koseri ATCC BAA-895 CKO_01318 -216 4.6 TACTCAGAAGTGAGTA
Yersinia pestis KIM y2023 -260 4 TACCTAAGAATAGTTA
Serratia proteamaculans 568 Spro_2704 -252 4 TACCCAAGAGTAGTTA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA2326 -289 4 CACCCACAAATAGGTA
Edwardsiella tarda EIB202 ETAE_1508 -239 4.4 TACCCAAGAATGAGTA
Position: -81
Score: 4.8
Sequence: TACCTCGTAAGCGGTA
Locus tag: ECA3606
ECA3606 -81 4.8 TACCTCGTAAGCGGTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: dnrN
Ortholog function: Nitric oxide-dependent regulator DnrN
Escherichia coli str. K-12 substr. MG1655 b4209 -79 3.7 TGCTACGTAAGGGTTA
Salmonella typhimurium LT2 STM4399 -78 3.9 CACCCCGAAAGAGTTA
Citrobacter koseri ATCC BAA-895 CKO_03623 -78 3.9 TGACCCGAAAGGGTTA
Yersinia pestis KIM y0652 -108 4.4 TACCCACTTGGAGTTA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA3606 -81 4.8 TACCTCGTAAGCGGTA
Position: -33
Score: 4.3
Sequence: TACCTCTGAAAAGGTA
Locus tag: ECA4519
ECA4519 -33 4.3 TACCTCTGAAAAGGTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: atpI
Ortholog function: ATP synthase maturation
Escherichia coli str. K-12 substr. MG1655 b3739 -31 4.6 TACCTCGAAGGGAGCA
Salmonella typhimurium LT2 STM3872 -30 4.5 TACCTCGAAGTGAGCA
Citrobacter koseri ATCC BAA-895 CKO_00079 -30 4.6 TACCTCGAAGGGAGCA
Serratia proteamaculans 568 Spro_0001 -33 4.6 TACCTCCTCAGGGGTA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA4519 -33 4.3 TACCTCTGAAAAGGTA
Edwardsiella tarda EIB202 ETAE_3526 -156 4.4 TACCTCCTGGGGGGTA
© 2009-2020 RegPrecise