Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of Fur regulog to Dickeya dadantii 3937

Reference regulog properties
Source regulog: Fur - Enterobacteriales
Regulator type: Transcription factor
Regulator family: FUR
Regulation mode: repressor (activator)
Biological process: Iron homeostasis
Effector: Iron ion, (Fe2+)
Phylum: Proteobacteria/gamma
Propagated regulon:
Target genome Dickeya dadantii 3937
Orthologous TF(s) null
Regulated genes 23
Built upon 656 sites [see more]
Predicted regulatory interactions in Dickeya dadantii 3937
Locus tag Position Score Sequence
Position: -42
Score: 4.5
Sequence: GAGAATGAAAATCATTTGA
Locus tag: null
null -42 4.5 GAGAATGAAAATCATTTGA
Supported by regulated orthologs from reference regulons
Ortholog gene name: fecI
Ortholog function: RNA polymerase sigma-70 factor FecI
Erwinia carotovora subsp. atroseptica SCRI1043 ECA0813 -49 4.4 ATTAATGATAATGAAAATC
-43 4.5 GATAATGAAAATCATTTCA
Position: -65
Score: 4.6
Sequence: GCACTTGATAATCATTATC
Position: -59
Score: 4.3
Sequence: GATAATCATTATCAACTTT
Locus tag: null
null -65 4.6 GCACTTGATAATCATTATC
-59 4.3 GATAATCATTATCAACTTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: mntH
Ortholog function: Mn2+/Fe2+ transporter, NRAMP family
Escherichia coli str. K-12 substr. MG1655 b2392 -68 4.7 GAATTTGATAATCATTCTC
-62 4.2 GATAATCATTCTCGTTTGG
Salmonella typhimurium LT2 STM2408 -68 4.5 GCACTTGATAATCATTATC
-62 4.8 GATAATCATTATCAATAAA
Citrobacter koseri ATCC BAA-895 CKO_00404 -50 4.3 GCACTTGATAATCATTCTC
-44 4.5 GATAATCATTCTCAATAAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02743 -68 4.3 GAACTTGATAATCATTCGC
-62 4.3 GATAATCATTCGCATTTTG
Enterobacter sp. 638 Ent638_2926 -67 4.8 GATCTTGATAATCATTCTC
-61 4.8 GATAATCATTCTCATTTTG
Yersinia pestis KIM y1500 -78 4 GCGCTTGATAATTATTCTC
-72 4.6 GATAATTATTCTCATTTAA
Serratia proteamaculans 568 Spro_3415 -66 4.3 GCACTTGATAATTATTATC
-60 5.2 GATAATTATTATCATTTAC
Erwinia carotovora subsp. atroseptica SCRI1043 ECA0843 -63 4.5 GCACTTGATAATCATTATC
-57 5.2 GATAATCATTATCATTTTT
Edwardsiella tarda EIB202 ETAE_1142 -134 4.5 GCAGTTGATAATCATTATC
Position: -143
Score: 4.6
Sequence: GATAATGGGTATCATTTGT
Position: -125
Score: 4.9
Sequence: TAAAATAATTCTCATTATT
Locus tag: null
null -143 4.6 GATAATGGGTATCATTTGT
-125 4.9 TAAAATAATTCTCATTATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ECA0877
Ortholog function: TonB-like protein
Erwinia carotovora subsp. atroseptica SCRI1043 ECA0877 -269 4.4 TAAAACGATTATCATTTGT
-263 4.1 GATTATCATTTGTATTATT
Position: -78
Score: 4.4
Sequence: GCAAATAAAAATAATTATT
Position: -75
Score: 4.7
Sequence: AATAAAAATAATTATTATT
Position: -72
Score: 5.1
Sequence: AAAAATAATTATTATTATT
Position: -69
Score: 5.1
Sequence: AATAATTATTATTATTTTT
Locus tag: null
null -78 4.4 GCAAATAAAAATAATTATT
-75 4.7 AATAAAAATAATTATTATT
-72 5.1 AAAAATAATTATTATTATT
-69 5.1 AATAATTATTATTATTTTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: Spro_1015
Ortholog function: iron(III) ABC transporter, periplasmic protein
Yersinia pestis KIM y3342 -41 4.2 ACAAACGATTTTGATTATC
-35 4.6 GATTTTGATTATCATTCGC
Serratia proteamaculans 568 Spro_1015 -52 4.3 GCTAATGAGAGTGATTATC
Position: -156
Score: 4.6
Sequence: AGCAATGATAATAATTATT
Position: -153
Score: 4.8
Sequence: AATGATAATAATTATTATT
Position: -150
Score: 5.4
Sequence: GATAATAATTATTATTAAC
Locus tag: null
null -156 4.6 AGCAATGATAATAATTATT
-153 4.8 AATGATAATAATTATTATT
-150 5.4 GATAATAATTATTATTAAC
Supported by regulated orthologs from reference regulons
Ortholog gene name: hemS
Ortholog function: hemin transport protein
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_03088 -133 4 GATAATACCTATCATTACC
Enterobacter sp. 638 Ent638_1740 -50 4.2 TTTGTTGATAATGATTATC
-44 5.1 GATAATGATTATCATTGTT
Erwinia amylovora ATCC 49946 EAM_1642 -65 4.2 TTTGTTGATAATGATTATC
-59 4.8 GATAATGATTATCATTCCA
Yersinia pestis KIM y0542 -48 3.7 GATAATGCTTATCACACTG
-30 4.1 GATAGTCGTTATCATTAAG
Serratia proteamaculans 568 Spro_2168 -68 4 TCACATGATAATGATTCTC
-62 4.6 GATAATGATTCTCACTTTG
Erwinia carotovora subsp. atroseptica SCRI1043 ECA1846 -59 4.7 GAAAATGATTCTCATTCAT
Edwardsiella tarda EIB202 ETAE_1798 -10 4.1 TTATACGATAATGATTATC
-4 5.1 GATAATGATTATCATTAAG
Proteus mirabilis HI4320 PMI1427 -52 5.1 GATAACGATAATGATTATC
-46 5.4 GATAATGATTATCATAATC
-40 4.4 GATTATCATAATCATAACC
Photorhabdus luminescens subsp. laumondii TTO1 plu2633 -54 4.7 TATAACGATAATAATTCTC
-48 4.6 GATAATAATTCTCACTATG
Position: -42
Score: 4.2
Sequence: TTAAATGAAAATGGTTATC
Position: -36
Score: 5.4
Sequence: GAAAATGGTTATCATTATC
Position: -30
Score: 5
Sequence: GGTTATCATTATCATTATT
Locus tag: null
null -42 4.2 TTAAATGAAAATGGTTATC
-36 5.4 GAAAATGGTTATCATTATC
-30 5 GGTTATCATTATCATTATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: sitA
Ortholog function: iron ABC transporter, periplasmic substrate-binding protein
Salmonella typhimurium LT2 STM2861 -99 4.5 GCAAATAAGAATTATTTTC
-93 4.2 AAGAATTATTTTCATTTAT
Citrobacter koseri ATCC BAA-895 CKO_04090 -84 4.5 GTAAATAAGAATTATTTTC
-78 4.2 AAGAATTATTTTCATTTAT
Citrobacter koseri ATCC BAA-895 CKO_00940 -111 4.1 GATAAAGATAATTTTTCTC
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_03078 -99 4.5 GCAAATAAGAATTATTTTC
-93 4.2 AAGAATTATTTTCATTTAT
Enterobacter sp. 638 Ent638_1111 -98 4.9 TTTAATGATAATTATTTTC
-92 4.5 GATAATTATTTTCATTTAA
Yersinia pestis KIM y1897 -39 5.2 GGTATTGATAATCATTTTC
-33 4.7 GATAATCATTTTCATTTGT
Serratia proteamaculans 568 Spro_2133 -41 5.4 GATATTGATAATCATTTTC
-35 4.6 GATAATCATTTTCATTTGA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA2392 -53 5.1 GATATTGATAATTATTCTC
Proteus mirabilis HI4320 PMI1027 -63 4.2 TGAAATGATATTGATAATC
-57 5.5 GATATTGATAATCATTATC
Photorhabdus luminescens subsp. laumondii TTO1 plu2672 -49 5.2 GATATTGATAATCGTTATC
-43 4.5 GATAATCGTTATCATATAC
Position: -121
Score: 4.8
Sequence: ATTAATAAGAATCATTTTT
Locus tag: null
null -121 4.8 ATTAATAAGAATCATTTTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: sfuA
Ortholog function: iron(III) ABC transporter, periplasmic protein
Yersinia pestis KIM y1526 -108 4.8 AACAATGATAATCATTTTT
-102 4.7 GATAATCATTTTTATTACC
Erwinia carotovora subsp. atroseptica SCRI1043 ECA3137 -169 4.2 CGAAATAATAATAACTATC
-163 4.7 AATAATAACTATCATTATT
-157 4.4 AACTATCATTATTATTATC
Position: -49
Score: 4
Sequence: GACAGCCAAAATCATTATC
Position: -43
Score: 4.2
Sequence: CAAAATCATTATCAGTAAT
Locus tag: null
null -49 4 GACAGCCAAAATCATTATC
-43 4.2 CAAAATCATTATCAGTAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: dps
Ortholog function: DNA protection ferritin-like protein
Salmonella typhimurium LT2 STM0831 -188 4.4 TAAAATGAGAATTATTACC
-136 4 TTTAATCAAAATAAATATT
Citrobacter koseri ATCC BAA-895 CKO_02310 -188 4.5 GTGAATGAGAATTATTAAC
-137 4.3 TTTAATCATTTTCAATATT
Enterobacter sp. 638 Ent638_1299 -118 4.1 TAACATTATTATCACTATT
Position: -195
Score: 5
Sequence: GGTAATGAAAATAATTATC
Position: -189
Score: 4.2
Sequence: GAAAATAATTATCAAATCT
Position: -182
Score: 3.5
Sequence: ATTATCAAATCTTAATTTC
Position: -152
Score: 5.2
Sequence: CATAATGAAAATCATTATC
Position: -146
Score: 4.3
Sequence: GAAAATCATTATCATGACT
Position: -123
Score: 3.6
Sequence: GATAATACTTTGAATTTAT
Locus tag: null
null -195 5 GGTAATGAAAATAATTATC
-189 4.2 GAAAATAATTATCAAATCT
-182 3.5 ATTATCAAATCTTAATTTC
-152 5.2 CATAATGAAAATCATTATC
-146 4.3 GAAAATCATTATCATGACT
-123 3.6 GATAATACTTTGAATTTAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ftnA
Ortholog function: ferritin
Escherichia coli str. K-12 substr. MG1655 b1905 -127 3.4 GgTAATGcgttTtATTccC
-121 3 GcgttTtATtccCATTcgt
Salmonella typhimurium LT2 STM1935 -100 4 AATAATTAAATTTAATATT
Citrobacter koseri ATCC BAA-895 CKO_01042 -97 4.3 AATAATTAAATTTATTATT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02402 -161 4 ATAAATTAAAAGCATTCTC
-155 3.8 TAAAAGCATTCTCATTTAT
Enterobacter sp. 638 Ent638_2486 -103 3.7 TATTTTAATAAATAATATC
-97 3.6 AATAAATAATATCTTTATT
Erwinia amylovora ATCC 49946 EAM_2940 -131 4.4 TGGAATGATTATCAATTAC
Yersinia pestis KIM y2524 -93 4.4 AATAATGTGAATGATTATC
-87 4.1 GTGAATGATTATCATGATG
Serratia proteamaculans 568 Spro_1942 -174 4.5 GAAAATAGTTATCATAATT
-168 4 AGTTATCATAATTATTTAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA2473 -158 4.6 TTAAATGATAATGAATATC
-152 4.8 GATAATGAATATCAATAGC
Proteus mirabilis HI4320 PMI1007 -184 4.7 GTTAATGATAATCAATTCC
-178 4.1 GATAATCAATTCCATTAAT
Photorhabdus luminescens subsp. laumondii TTO1 plu2689 -147 4.4 TTAAATGAGATTCATTTTC
-141 4.4 GAGATTCATTTTCATTTTT
Position: -139
Score: 5.3
Sequence: AGTAATAATTATCATTAAC
Locus tag: null
null -139 5.3 AGTAATAATTATCATTAAC
Supported by regulated orthologs from reference regulons
Ortholog gene name: sufA
Ortholog function: scaffold protein for iron-sulfur cluster assembly
Escherichia coli str. K-12 substr. MG1655 b1684 -65 4.4 TGAACTGATAATCATTATC
-59 5.1 GATAATCATTATCACTAAC
Salmonella typhimurium LT2 STM1369 -66 4.7 TGAAGTGATAATCATTATC
-60 5.1 GATAATCATTATCACTAAC
Citrobacter koseri ATCC BAA-895 CKO_01717 -66 4.7 TGAAGTGATAATCATTATC
-60 5.1 GATAATCATTATCACTAAC
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02141 -66 4.7 TGAAGTGATAATCATTATC
-60 5.1 GATAATCATTATCACTAAC
Enterobacter sp. 638 Ent638_1760 -67 4.4 TGAAGTGATAATCGTTATC
-61 4.7 GATAATCGTTATCACTAAC
Yersinia pestis KIM y1934 -129 4.5 TGAAGTGATAATTATTATC
-123 4.8 GATAATTATTATCACTACC
Serratia proteamaculans 568 Spro_2179 -77 4.4 TGAAGTGATAATCGTTATC
-71 4.7 GATAATCGTTATCACTAAC
Proteus mirabilis HI4320 PMI1416 -66 4.4 GATAAGGGTTATCATTACC
-60 4 GGTTATCATTACCATTAGA
Photorhabdus luminescens subsp. laumondii TTO1 plu2622 -87 4.4 GATAAAGGTTATCATTACC
-81 4.3 GGTTATCATTACCATTATA
Position: -213
Score: 4.5
Sequence: AATATTGAGAACCATTTAC
Locus tag: null
null -213 4.5 AATATTGAGAACCATTTAC
Supported by regulated orthologs from reference regulons
Ortholog gene name: CKO_02589
Ortholog function: TonB-dependent siderophore receptor
Citrobacter koseri ATCC BAA-895 CKO_02589 -114 4.2 GCAAATGGTAATGATTTGC
-108 4.3 GGTAATGATTTGCAATAAC
Enterobacter sp. 638 Ent638_1079 -109 4.3 GGGAATGATTTGCAATATC
Proteus mirabilis HI4320 PMI0363 -103 4.9 TAGAATAATAATAATTATC
-97 5 AATAATAATTATCATTAGT
Position: -42
Score: 4.4
Sequence: TTATATGATAATAATTATT
Position: -39
Score: 4.3
Sequence: TATGATAATAATTATTAAA
Position: -36
Score: 4.7
Sequence: GATAATAATTATTAAACTC
Locus tag: null
null -42 4.4 TTATATGATAATAATTATT
-39 4.3 TATGATAATAATTATTAAA
-36 4.7 GATAATAATTATTAAACTC
Supported by regulated orthologs from reference regulons
Ortholog gene name: yiuA
Ortholog function: siderophore ABC transporter, substrate binding periplasmic protein
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_00520 -54 4.1 GAGAATAATTCTCAGAATC
Enterobacter sp. 638 Ent638_0573 -131 4.4 TCAATTGATAAGCATTATC
Erwinia amylovora ATCC 49946 EAM_2096 -48 4.5 AAGAATGATAATATTTATC
Erwinia carotovora subsp. atroseptica SCRI1043 ECA3241 -77 4.2 ATATACGATAATAATTATC
-71 4.7 GATAATAATTATCAAACTC
Position: -44
Score: 5
Sequence: GATAATAACTCTCATTATC
Locus tag: null
null -44 5 GATAATAACTCTCATTATC
Supported by regulated orthologs from reference regulons
Ortholog gene name: EAM_2941
Ortholog function: Fe3+-hydroxamate ABC transporter, periplasmic component
Erwinia amylovora ATCC 49946 EAM_2941 -41 4.1 GAAACTGATAATAATAATC
-35 5.5 GATAATAATAATCATTTTC
-29 4.1 AATAATCATTTTCTTTTGC
Erwinia carotovora subsp. atroseptica SCRI1043 ECA3246 -51 5 AATAATGATAACTATTATC
Position: -85
Score: 4.5
Sequence: CTTTATAAGAATCATTATC
Position: -79
Score: 4.9
Sequence: AAGAATCATTATCGTTTTC
Locus tag: null
null -85 4.5 CTTTATAAGAATCATTATC
-79 4.9 AAGAATCATTATCGTTTTC
Supported by regulated orthologs from reference regulons
Ortholog gene name: fhuC
Ortholog function: iron-hydroxamate transporter ATP-binding subunit
Escherichia coli str. K-12 substr. MG1655 b0151 -57 4.4 CTTTATAATAATCATTCTC
-51 4.5 AATAATCATTCTCGTTTAC
Salmonella typhimurium LT2 STM0192 -56 4.8 GGTTATAATAATAATTATC
-50 4.8 AATAATAATTATCGTTTAC
Citrobacter koseri ATCC BAA-895 CKO_03217 -57 4 GGTCATAAGAATAATTCTC
-51 4.3 AAGAATAATTCTCGTTTAC
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_00166 -56 4 CGTCATAATAATAATTCTC
-50 4.5 AATAATAATTCTCGTTTAC
Enterobacter sp. 638 Ent638_0691 -58 4.3 GGTCATAATAATAATTCTC
-52 4.5 AATAATAATTCTCGTTTAC
Yersinia pestis KIM y0796 -157 4.4 CGTTTTAATAATCATTATC
-151 4.7 AATAATCATTATCGTTACC
Serratia proteamaculans 568 Spro_3978 -60 4.7 GCTTATAATAATTATTATC
-54 4.7 AATAATTATTATCGTTTAC
Erwinia carotovora subsp. atroseptica SCRI1043 ECA3312 -123 4.3 CTTTATCGTAATCATTATC
-117 4.5 CGTAATCATTATCGTTCTC
Position: -124
Score: 5
Sequence: AATAATGTTTCTCATTATC
Locus tag: null
null -124 5 AATAATGTTTCTCATTATC
Supported by regulated orthologs from reference regulons
Ortholog gene name: CKO_00978
Ortholog function: FAD-binding 9 siderophore-interacting domain protein
Citrobacter koseri ATCC BAA-895 CKO_00978 -90 4.3 GATAAGGTTTCTCATTATC
Serratia proteamaculans 568 Spro_0924 -93 4.3 AATAATATTTATTGTTATC
Erwinia carotovora subsp. atroseptica SCRI1043 ECA0065 -106 4.3 AATGGTGATAATGATTATC
-100 4.9 GATAATGATTATCGTTAGT
Position: -62
Score: 4
Sequence: TGAAATAAAAACCATTCTT
Position: -56
Score: 4.3
Sequence: AAAAACCATTCTTATTTAC
Locus tag: null
null -62 4 TGAAATAAAAACCATTCTT
-56 4.3 AAAAACCATTCTTATTTAC
Supported by regulated orthologs from reference regulons
Ortholog gene name: bfd
Ortholog function: bacterioferritin-associated ferredoxin
Escherichia coli str. K-12 substr. MG1655 b3337 -51 3.9 tgaAATaAgAActATTtTC
-45 3.9 aAgAActATttTCATTtat
Salmonella typhimurium LT2 STM3444 -55 4.6 TGTAATCATAACCATTCTC
-49 4.3 CATAACCATTCTCATTTAC
Citrobacter koseri ATCC BAA-895 CKO_04744 -55 4.3 TGTAATCATAACTATTCTC
-49 4.2 CATAACTATTCTCATTTAC
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_03723 -55 4.6 TGTAATCATAACCATTCTC
-49 3.9 cATAAccATtcTCATTtaa
Enterobacter sp. 638 Ent638_3755 -55 4.7 TGTAATCATAATTATTCTC
-49 4.2 CATAATTATTCTCACTTAC
Erwinia carotovora subsp. atroseptica SCRI1043 ECA4034 -132 3.9 tgaAATaAaAATaATTcTt
-126 4.4 AAAAATAATTCTTATTTAC
Proteus mirabilis HI4320 PMI3252 -57 4.2 TGAAATAACAATGATTATC
-51 4.8 AACAATGATTATCATTTAC
Photorhabdus luminescens subsp. laumondii TTO1 plu4729 -59 4.4 TGAAATGAGACTCATTATT
-53 3.6 GAgAcTcATtATtATTtaa
Position: -117
Score: 4.3
Sequence: AATAATCATTTTCAAGATC
Locus tag: null
null -117 4.3 AATAATCATTTTCAAGATC
Supported by regulated orthologs from reference regulons
Ortholog gene name: sodA
Ortholog function: manganese/iron superoxide dismutase
Escherichia coli str. K-12 substr. MG1655 b3908 -99 4.7 GGCATTGATAATCATTTTC
-93 5 GATAATCATTTTCAATATC
Salmonella typhimurium LT2 STM4055 -99 4.7 GGCATTGATAATCATTTTC
-93 5 GATAATCATTTTCAATATC
Citrobacter koseri ATCC BAA-895 CKO_03093 -88 4.3 GGCATTGATAAGCATTTTC
-82 4.4 GATAAGCATTTTCAATATC
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_04217 -88 4.3 GGCATTGATAAGCATTTTC
-82 4 GATAAGCATTTTCAATACC
Enterobacter sp. 638 Ent638_4063 -100 4.7 GGCATTGATAATCATTTTC
-94 5 GATAATCATTTTCAATATC
Yersinia pestis KIM y4080 -104 4.4 AGGTTTGATAATCATTTTC
-98 5 GATAATCATTTTCAATATC
Serratia proteamaculans 568 Spro_0081 -105 4.7 GGCATTGATAATCATTTTC
-99 5 GATAATCATTTTCAATATC
Erwinia carotovora subsp. atroseptica SCRI1043 ECA0092 -105 4.9 AATAATCATTTTCAATATC
Proteus mirabilis HI4320 PMI3036 -95 4.6 GGATATGATAATGATTTTC
-89 5.2 GATAATGATTTTCATTAAC
Photorhabdus luminescens subsp. laumondii TTO1 plu0075 -102 4.3 GGTATTGATAAGCATTTCC