Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
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Propagation of ExuR regulog to Shigella sonnei Ss046

Reference regulog properties
Source regulog: ExuR - Enterobacteriales
Regulator type: Transcription factor
Regulator family: GntR/Others
Regulation mode: repressor
Biological process: Galacturonate utilization
Effector: Galacturonate
Phylum: Proteobacteria/gamma
Propagated regulon:
Target genome Shigella sonnei Ss046
Orthologous TF(s) SSO_3253
Regulated genes 4
Built upon 48 sites [see more]
Predicted regulatory interactions in Shigella sonnei Ss046
Locus tag Position Score Sequence
Position: -138
Score: 5.2
Sequence: GAATTGGTAGAACAACTTC
Position: -65
Score: 6
Sequence: AAAGTGGTGTAACAACTCC
Locus tag: SSO_0801
SSO_0801 -138 5.2 GAATTGGTAGAACAACTTC
-65 6 AAAGTGGTGTAACAACTCC
Supported by regulated orthologs from reference regulons
Ortholog gene name: lfaT
Ortholog function: Putative MFS superfamily hexuronate transporter
Citrobacter koseri ATCC BAA-895 CKO_02296 -59 4.6 AAATTTGTGTGACACCAAA
Enterobacter sp. 638 Ent638_1313 -60 4.4 TAATCTGTGTGACAACCGA
Serratia proteamaculans 568 Spro_3599 -209 5.2 GAATTGGTATACCAACTTT
Position: -33
Score: 4.3
Sequence: CAGGTTGTATGACTAATCA
Locus tag: SSO_1607
SSO_1607 -33 4.3 CAGGTTGTATGACTAATCA
Supported by regulated orthologs from reference regulons
Ortholog gene name: uxaB
Ortholog function: Altronate oxidoreductase (EC 1.1.1.58)
Escherichia coli str. K-12 substr. MG1655 b1521 -33 4.3 CAGGTTGTATGACTAATCA
Citrobacter koseri ATCC BAA-895 CKO_01541 -34 4.5 CAGGTTGTATGACTAATTA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_01640 -34 4.3 CAGGTTGTATGACTACTAT
Yersinia pestis KIM y3599 -69 6 TAATTGGTGTGATAACTTT
Edwardsiella tarda EIB202 ETAE_0437 -69 6.1 AAATTGGTGTGATAACTTC
Position: -71
Score: 6.2
Sequence: AAATTGGTGTGATAACTTT
Locus tag: SSO_3245
SSO_3245 -71 6.2 AAATTGGTGTGATAACTTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: uxaC
Ortholog function: Uronate isomerase (EC 5.3.1.12)
Escherichia coli str. K-12 substr. MG1655 b3092 -71 6.2 AAATTGGTGTGATAACTTT
Citrobacter koseri ATCC BAA-895 CKO_04494 -8 6.2 AAATTGGTGTGATAACTTT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_03520 -90 6.2 AAATTGGTGTGATAACTTT
Enterobacter sp. 638 Ent638_3546 -70 6.2 AAATTGGTGTGATAACTTT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA0645 -67 5.4 TAATTGGTGTGATATCTTT
Position: -46
Score: 6.3
Sequence: AAAGTGGTATGATAACTTC
Locus tag: SSO_3253
SSO_3253 -46 6.3 AAAGTGGTATGATAACTTC
Supported by regulated orthologs from reference regulons
Ortholog gene name: exuR
Ortholog function: D-galacturonate transcriptional repressor, GntR family
Escherichia coli str. K-12 substr. MG1655 b3094 -47 6 AAAGTGGTATAACAAATAT
Citrobacter koseri ATCC BAA-895 CKO_04496 -47 6 AAAGTGGTATAACAAATAT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_03522 -48 5.8 AAAGTGGTATAACAAATCG
Enterobacter sp. 638 Ent638_3548 -45 6.1 AAAGTGGTATAACAAATCA
Yersinia pestis KIM y3602 -105 5.8 TAAGTGGTATAACAAATCC
Serratia proteamaculans 568 Spro_4323 -57 5.8 TAAGTGGTATAACAAATCC
Erwinia carotovora subsp. atroseptica SCRI1043 ECA0643 -98 5.9 TAAGTGGTATAACAAATCA
Edwardsiella tarda EIB202 ETAE_0434 -68 5.8 AAAGTGGTATAACAACTCG
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