Propagation of ExuR regulog to Shigella sonnei Ss046
| Source regulog: | ExuR - Enterobacteriales |
| Regulator type: | Transcription factor |
| Regulator family: | GntR/Others |
| Regulation mode: | repressor |
| Biological process: | Galacturonate utilization |
| Effector: | Galacturonate |
| Phylum: | Proteobacteria/gamma |
| Propagated regulon: | |
| Target genome | Shigella sonnei Ss046 |
| Orthologous TF(s) | SSO_3253 |
| Regulated genes | 4 |
| Locus tag | Position | Score | Sequence | |
|---|---|---|---|---|
|
Position: -138
Score: 5.2 Sequence: GAATTGGTAGAACAACTTC
Position: -65
Score: 6 Sequence: AAAGTGGTGTAACAACTCC
Locus tag: SSO_0801
|
||||
| SSO_0801 | -138 | 5.2 | GAATTGGTAGAACAACTTC | |
| -65 | 6 | AAAGTGGTGTAACAACTCC | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: lfaT | ||||
| Ortholog function: Putative MFS superfamily hexuronate transporter | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_02296 | -59 | 4.6 | AAATTTGTGTGACACCAAA |
| Enterobacter sp. 638 | Ent638_1313 | -60 | 4.4 | TAATCTGTGTGACAACCGA |
| Serratia proteamaculans 568 | Spro_3599 | -209 | 5.2 | GAATTGGTATACCAACTTT |
|
Position: -33
Score: 4.3 Sequence: CAGGTTGTATGACTAATCA
Locus tag: SSO_1607
|
||||
| SSO_1607 | -33 | 4.3 | CAGGTTGTATGACTAATCA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: uxaB | ||||
| Ortholog function: Altronate oxidoreductase (EC 1.1.1.58) | ||||
| Escherichia coli str. K-12 substr. MG1655 | b1521 | -33 | 4.3 | CAGGTTGTATGACTAATCA |
| Citrobacter koseri ATCC BAA-895 | CKO_01541 | -34 | 4.5 | CAGGTTGTATGACTAATTA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_01640 | -34 | 4.3 | CAGGTTGTATGACTACTAT |
| Yersinia pestis KIM | y3599 | -69 | 6 | TAATTGGTGTGATAACTTT |
| Edwardsiella tarda EIB202 | ETAE_0437 | -69 | 6.1 | AAATTGGTGTGATAACTTC |
|
Position: -71
Score: 6.2 Sequence: AAATTGGTGTGATAACTTT
Locus tag: SSO_3245
|
||||
| SSO_3245 | -71 | 6.2 | AAATTGGTGTGATAACTTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: uxaC | ||||
| Ortholog function: Uronate isomerase (EC 5.3.1.12) | ||||
| Escherichia coli str. K-12 substr. MG1655 | b3092 | -71 | 6.2 | AAATTGGTGTGATAACTTT |
| Citrobacter koseri ATCC BAA-895 | CKO_04494 | -8 | 6.2 | AAATTGGTGTGATAACTTT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_03520 | -90 | 6.2 | AAATTGGTGTGATAACTTT |
| Enterobacter sp. 638 | Ent638_3546 | -70 | 6.2 | AAATTGGTGTGATAACTTT |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA0645 | -67 | 5.4 | TAATTGGTGTGATATCTTT |
|
Position: -46
Score: 6.3 Sequence: AAAGTGGTATGATAACTTC
Locus tag: SSO_3253
|
||||
| SSO_3253 | -46 | 6.3 | AAAGTGGTATGATAACTTC | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: exuR | ||||
| Ortholog function: D-galacturonate transcriptional repressor, GntR family | ||||
| Escherichia coli str. K-12 substr. MG1655 | b3094 | -47 | 6 | AAAGTGGTATAACAAATAT |
| Citrobacter koseri ATCC BAA-895 | CKO_04496 | -47 | 6 | AAAGTGGTATAACAAATAT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_03522 | -48 | 5.8 | AAAGTGGTATAACAAATCG |
| Enterobacter sp. 638 | Ent638_3548 | -45 | 6.1 | AAAGTGGTATAACAAATCA |
| Yersinia pestis KIM | y3602 | -105 | 5.8 | TAAGTGGTATAACAAATCC |
| Serratia proteamaculans 568 | Spro_4323 | -57 | 5.8 | TAAGTGGTATAACAAATCC |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA0643 | -98 | 5.9 | TAAGTGGTATAACAAATCA |
| Edwardsiella tarda EIB202 | ETAE_0434 | -68 | 5.8 | AAAGTGGTATAACAACTCG |