Propagation of UxuR regulog to Shigella sonnei Ss046
| Source regulog: | UxuR - Enterobacteriales |
| Regulator type: | Transcription factor |
| Regulator family: | GntR/Others |
| Regulation mode: | repressor |
| Biological process: | Glucuronate utilization |
| Effector: | Glucuronate |
| Phylum: | Proteobacteria/gamma |
| Propagated regulon: | |
| Target genome | Shigella sonnei Ss046 |
| Orthologous TF(s) | SSO_4479 |
| Regulated genes | 10 |
| Locus tag | Position | Score | Sequence | |
|---|---|---|---|---|
|
Position: -129
Score: 5.8 Sequence: CTATTGGTTAACCAATTT
Locus tag: SSO_1542
|
||||
| SSO_1542 | -129 | 5.8 | CTATTGGTTAACCAATTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: uidR | ||||
| Ortholog function: hexuronide repressor, TetR family | ||||
| Escherichia coli str. K-12 substr. MG1655 | b1618 | -129 | 5.8 | CTATTGGTTAACCAATTT |
|
Position: -62
Score: 4.8 Sequence: GAATTGGTTAACTAATCA
Locus tag: SSO_1543
|
||||
| SSO_1543 | -62 | 4.8 | GAATTGGTTAACTAATCA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: uidA | ||||
| Ortholog function: beta-D-glucuronidase | ||||
| Escherichia coli str. K-12 substr. MG1655 | b1617 | -62 | 4.8 | GAATTGGTTAACTAATCA |
| -42 | 4.6 | TTAAAGGTTGACCAGTAT | ||
|
Position: -176
Score: 4.1 Sequence: AATTTATTATACCAATCT
Locus tag: SSO_2228
|
||||
| SSO_2228 | -176 | 4.1 | AATTTATTATACCAATCT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: yeiQ | ||||
| Ortholog function: paralog of D-mannonate oxidoreductase | ||||
| Escherichia coli str. K-12 substr. MG1655 | b2172 | -176 | 4.1 | AATTTATTATACCAATCT |
| Yersinia pestis KIM | y2903 | -363 | 4.3 | AtgTTGtTatACCgATTT |
| -250 | 3.9 | tAtTgGacTtACCAATTT | ||
| -92 | 4.2 | AAAcTGGTctAaCAAcTT | ||
|
Position: -286
Score: 4.8 Sequence: AAATTGGTCAACCATTGT
Position: -180
Score: 5.4 Sequence: GATGTGGTTAACCAATTT
Locus tag: SSO_4477
|
||||
| SSO_4477 | -286 | 4.8 | AAATTGGTCAACCATTGT | |
| -180 | 5.4 | GATGTGGTTAACCAATTT | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: uxuA | ||||
| Ortholog function: Mannonate dehydratase (EC 4.2.1.8) | ||||
| Escherichia coli str. K-12 substr. MG1655 | b4322 | -180 | 5.4 | GATGTGGTTAACCAATTT |
| Salmonella typhimurium LT2 | STM3135 | -336 | 5.6 | AAATTGGTTGACCAATCA |
| -149 | 5.2 | GATTTGGTTAGCCAATTT | ||
| Yersinia pestis KIM | y2902 | -510 | 4.5 | AAgTTGtTagACCAgTTT |
| -352 | 4 | AAATTGGTaAgtCcAaTa | ||
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA1093 | -109 | 5.2 | TAATTGGTCAATCAATTT |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu0170 | -77 | 5.7 | TTTTTGGTTGACCAATTT |
|
Position: -173
Score: 5.4 Sequence: TATTTGGTTGACCAGTTT
Locus tag: SSO_4479
|
||||
| SSO_4479 | -173 | 5.4 | TATTTGGTTGACCAGTTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: uxuR | ||||
| Ortholog function: D-glucuronate repressor, GntR family | ||||
| Escherichia coli str. K-12 substr. MG1655 | b4324 | -173 | 5.4 | TATTTGGTTGACCAGTTT |
| Salmonella typhimurium LT2 | STM4507 | -231 | 5.9 | ATATTGGTAAACCAATAT |
| -106 | 5.1 | TTGTTGGTTGACCAGTTT | ||
| Edwardsiella tarda EIB202 | ETAE_1037 | -330 | 5.3 | TTTTTGGTTGACCAATAA |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu0171 | -77 | 5.7 | TTTTTGGTTGACCAATTT |
|
Position: -81
Score: 3.9 Sequence: AATGTGATTAACCAGGTC
Locus tag: SSO_4503
|
||||
| SSO_4503 | -81 | 3.9 | AATGTGATTAACCAGGTC | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: yjjM | ||||
| Ortholog function: L-galactonate transcriptional regulator, GntR family | ||||
| Escherichia coli str. K-12 substr. MG1655 | b4357 | 27 | 3.9 | AATGTGATTAACCAGGTC |
|
Position: -168
Score: 3.8 Sequence: GACCTGGTTAATCACATT
Locus tag: SSO_4504
|
||||
| SSO_4504 | -168 | 3.8 | GACCTGGTTAATCACATT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: yjjN | ||||
| Ortholog function: L-galactonate oxidoreductase | ||||
| Escherichia coli str. K-12 substr. MG1655 | b4358 | -183 | 3.8 | GACCTGGTTAATCACATT |
| Salmonella typhimurium LT2 | STM3082 | -34 | 4.4 | GAATTGGTAAACAAAACA |