Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
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Propagation of NagC regulog to Shigella boydii Sb227

Reference regulog properties
Source regulog: NagC - Enterobacteriales
Regulator type: Transcription factor
Regulator family: ROK
Regulation mode: repressor (activator)
Biological process: N-acetylglucosamine utilization
Effector: N-acetylglucosamine-6-phosphate
Phylum: Proteobacteria/gamma
Propagated regulon:
Target genome Shigella boydii Sb227
Orthologous TF(s) SBO_0538
Regulated genes 6
Built upon 68 sites [see more]
Predicted regulatory interactions in Shigella boydii Sb227
Locus tag Position Score Sequence
Position: -209
Score: 5.9
Sequence: TTTAATTCGTATCGCAAATTAAA
Locus tag: SBO_0540
SBO_0540 -209 5.9 TTTAATTCGTATCGCAAATTAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: nagB
Ortholog function: Glucosamine-6-phosphate deaminase (EC 3.5.99.6)
Escherichia coli str. K-12 substr. MG1655 b0678 -209 5.9 TTTAATTCGTATCGCAAATTAAA
-115 4.6 CTTATTTTATCATTCAAAAAATC
Salmonella typhimurium LT2 STM0684 -202 5.8 ATTAATTCGCCTCGCAAATTAAA
-108 4.8 CTTATTTTATGATTCAAAAAATC
Citrobacter koseri ATCC BAA-895 CKO_02486 -215 6 ATTAATTCGTATCGCAAATTAAA
-121 4.6 CTTATTTTATCATTCAAAAAATC
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_00699 -214 6 ATTAATTCGTATCGCAAATTAAA
-120 4.6 CTTATTTTATCATTCAAAAAATC
Enterobacter sp. 638 Ent638_1193 -215 6 ATTAATTCGTATCGCAAATTAAA
-121 4.6 CTTATTTTATCATTCAAAAAATC
Erwinia amylovora ATCC 49946 EAM_1147 -225 5.4 ATAAATTCGTACAGCAAATTAAT
-131 4.8 CTTATTTTATGATTCAAAAAATC
Yersinia pestis KIM y1202 -245 6 ATTATTTCGTAACGCAAATTAAA
-151 5.2 CTTATTTTATCATCCGAAAAAAT
Serratia proteamaculans 568 Spro_1227 -225 6 ATTATTTCGTATCGCAAATTAAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA1326 -211 5.7 AATAATTCGCTACACAAATTAAA
-118 4.6 CTTATTTCAAGATTAAAAAAAAC
Edwardsiella tarda EIB202 ETAE_2617 -221 5.6 ATTATTTTTCTCCGCAAATTAAA
-127 4.6 CTTATTTTATCATTCGAAAAATC
Proteus mirabilis HI4320 PMI0454 -248 6.1 ATTATTTTGTATCGCAAATTAAT
-154 4.8 CTTATTTTATGATTAAAAATATC
Photorhabdus luminescens subsp. laumondii TTO1 plu1317 -232 5 TTTATTTTTCTTGCAAAAATAAG
-138 4.7 CTTATTTTAATATAAAAAATATC
Position: -146
Score: 5.9
Sequence: TTTAATTTGCGATACGAATTAAA
Locus tag: SBO_0541
SBO_0541 -146 5.9 TTTAATTTGCGATACGAATTAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: nagE
Ortholog function: PTS system, N-acetylglucosamine-specific IIABC component
Escherichia coli str. K-12 substr. MG1655 b0679 -146 5.9 TTTAATTTGCGATACGAATTAAA
Salmonella typhimurium LT2 STM0685 -241 4.8 GATTTTTTGAATCATAAAATAAG
-147 5.8 TTTAATTTGCGAGGCGAATTAAT
Citrobacter koseri ATCC BAA-895 CKO_02485 -151 6 TTTAATTTGCGATACGAATTAAT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_00700 -123 6 TTTAATTTGCGATACGAATTAAT
Erwinia amylovora ATCC 49946 EAM_1148 -226 4.8 GATTTTTTGAATCATAAAATAAG
-132 5.4 ATTAATTTGCTGTACGAATTTAT
Serratia proteamaculans 568 Spro_1228 -132 6 TTTAATTTGCGATACGAAATAAT
Photorhabdus luminescens subsp. laumondii TTO1 plu1318 -88 5.3 ATTATTTTTCAACTAAAAATAAG
Position: -140
Score: 5.2
Sequence: ATTTTTTCGATATCTAAAATAAA
Locus tag: SBO_1229
SBO_1229 -140 5.2 ATTTTTTCGATATCTAAAATAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: manX
Ortholog function: PTS system, mannose-specific IIAB component
Escherichia coli str. K-12 substr. MG1655 b1817 -140 5.2 ATTTTTTCGATATCTAAAATAAA
Position: -230
Score: 5.1
Sequence: CTTAATTATCTTCGCGAATTATT
Locus tag: SBO_1352
SBO_1352 -230 5.1 CTTAATTATCTTCGCGAATTATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: chbB
Ortholog function: PTS system, chitobiose-specific IIB component (EC 2.7.1.69)
Escherichia coli str. K-12 substr. MG1655 b1738 -230 5.1 CTTAATTATCTTCGCGAATTATT
Citrobacter koseri ATCC BAA-895 CKO_01763 -217 5.1 CTTATTTATTGTCGCGAAATATT
Enterobacter sp. 638 Ent638_1706 -197 4.9 CTTATTTATTTGCGCGAATTATT
Position: -39
Score: 5.2
Sequence: CTTAATTCACAATAAAAAATAAC
Locus tag: SBO_3047
SBO_3047 -39 5.2 CTTAATTCACAATAAAAAATAAC
Supported by regulated orthologs from reference regulons
Ortholog gene name: galP
Ortholog function: D-galactose transporter
Escherichia coli str. K-12 substr. MG1655 b2943 -39 5.2 CTTAATTCACAATAAAAAATAAC
Salmonella typhimurium LT2 STM3091 -139 4.7 TATTTTTCAGATAATTAAATAAT
Position: -233
Score: 4.8
Sequence: GTTTATTCATTGATCGAAATAAG
Locus tag: SBO_3757
SBO_3757 -233 4.8 GTTTATTCATTGATCGAAATAAG
Supported by regulated orthologs from reference regulons
Ortholog gene name: glmU
Ortholog function: N-acetylglucosamine-1-phosphate uridyltransferase (EC 2.7.7.23) / Glucosamine-1-phosphate N-acetyltransferase (EC 2.3.1.157)
Escherichia coli str. K-12 substr. MG1655 b3730 -233 4.8 GTTTATTCATTGATCGAAATAAG
Salmonella typhimurium LT2 STM3862 -233 4.8 CTTTATTTATGGAGTAAAAAAAC
Citrobacter koseri ATCC BAA-895 CKO_00067 -233 4.8 CTTTATTCATGGGTCAAAAAAAT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_04135 -248 4.7 CTTTATTCAGGTGGCGAAAAAAC
Enterobacter sp. 638 Ent638_4135 -233 5.2 CTTTATTCATGAGGCGAAAAAAT
Yersinia pestis KIM y4133 -235 4.8 CTTGTTTTCTGTCGTAAAATAAG
Serratia proteamaculans 568 Spro_0010 -242 5 CTTTTTTTTTGTTTTAAAATAAG
Proteus mirabilis HI4320 PMI3066 -84 5.3 AATATTTTGTGTAACGAAATATG
Photorhabdus luminescens subsp. laumondii TTO1 plu0038 -85 4.7 GCTTTTTTGTATTGCGAAATATG
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