Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of AraC regulog to Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594

Reference regulog properties
Source regulog: AraC - Enterobacterales
Regulator type: Transcription factor
Regulator family: AraC
Regulation mode: activator (repressor)
Biological process: Arabinose utilization
Effector: Arabinose
Phylum: Proteobacteria
Propagated regulon:
Target genome Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594
Orthologous TF(s) SPC_0111
Regulated genes 4
Built upon 56 sites [see more]
Predicted regulatory interactions in Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594
Locus tag Position Score Sequence
Position: -212
Score: 8.4
Sequence: TAACAGAAGTGTCTATA-(4)-TGGCTGGAATGTCCACA
Locus tag: SPC_0110
SPC_0110 -212 8.4 TAACAGAAGTGTCTATA-(4)-TGGCTGGAATGTCCACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: araB
Ortholog function: Ribulokinase (EC 2.7.1.16)
Citrobacter koseri ATCC BAA-895 CKO_03319 -174 8.3 TAACAAAAGTGTCTATA-(4)-CGACAGAAATGTCCACA
-100 8.1 TAGCATTTTAATCCATA-(4)-TAGCGGATCCTGCCTGA
Enterobacter sp. 638 Ent638_0610 -172 8.6 TAACAAAAGTGTCTATA-(4)-CGGCAGAAATGTCCACA
-98 8.1 CAGCAATTTAATCCATA-(4)-TAGCGGATCCTGCCTGA
Escherichia coli str. K-12 substr. MG1655 b0063 -173 8.7 TAACAAAAGTGTCTATA-(4)-CGGCAGAAAAGTCCACA
-99 8 TAGCATTTTTATCCATA-(4)-TAGCGGATCCTACCTGA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_00062 -172 8.7 TAACAAAAGTGTCTATA-(4)-CGGCAGAAAAGTCCACA
-98 8.5 CAGCAAAATAATCCATA-(4)-TAGCGAATCCGGCCTGA
Salmonella typhimurium LT2 STM0103 -173 8.4 TAACAGAAGTGTCTATA-(4)-TGGCTGGAATGTCCACA
-99 8.1 TAGCATTTTTGTCCATA-(4)-TAGCGGATCCTGCCTGA
Position: -80
Score: 7.1
Sequence: TAGCATAATAATGAATA-(4)-AAGACGGATAAGGAATG
Locus tag: SPC_0404
SPC_0404 -80 7.1 TAGCATAATAATGAATA-(4)-AAGACGGATAAGGAATG
Supported by regulated orthologs from reference regulons
Ortholog gene name: araJ
Ortholog function: Protein AraJ precursor
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_01860 -310 4.4 GGACGGTAAAGGCGACA-(4)-TAAAACCGACATCAACA
Salmonella typhimurium LT2 STM0394 -134 7.1 TAGCATAATAATGAATA-(4)-AAGACGGATAAGGAATG
Position: -84
Score: 6.9
Sequence: TAGCCATTTAATCCATA-(4)-TGCCGTTTCCAGCCTGA
Locus tag: SPC_3074
SPC_3074 -84 6.9 TAGCCATTTAATCCATA-(4)-TGCCGTTTCCAGCCTGA
Supported by regulated orthologs from reference regulons
Ortholog gene name: araE
Ortholog function: Low-affinity L-arabinose transport system proton symport protein
Enterobacter sp. 638 Ent638_3294 -179 4.6 TATAAATTAAGTATTTA-(4)-TAAATGATGATTATTCA
-158 4.8 TAAATGATGATTATTCA-(4)-AAGTTTAAATTGGAATA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_03264 -159 7.5 CAGCAATATAGTCCATA-(4)-TGGCTTATCCTGCCTGA
-73 4.9 TGGCAGGAAAAAAATGA-(4)-AATCAGTAACGACTCTA
Salmonella typhimurium LT2 STM3016 -99 6.9 TAGCCATTTAATCCATA-(4)-TGCCGTTTCCAGCCTGA