Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
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Propagation of NikR regulog to Edwardsiella tarda EIB202

Reference regulog properties
Source regulog: NikR - Enterobacteriales
Regulator type: Transcription factor
Regulator family: NikR
Regulation mode: repressor
Biological process: Nickel homeostasis
Effector: Nickel ion, (Ni2+)
Phylum: Proteobacteria/gamma
Propagated regulon:
Target genome Edwardsiella tarda EIB202
Orthologous TF(s) ETAE_0262
Regulated genes 3
Built upon 9 sites [see more]
Predicted regulatory interactions in Edwardsiella tarda EIB202
Locus tag Position Score Sequence
Position: -59
Score: 7.7
Sequence: GTATGCAGAATTTATAAAATCATCATAC
Locus tag: ETAE_1379
ETAE_1379 -59 7.7 GTATGCAGAATTTATAAAATCATCATAC
Supported by regulated orthologs from reference regulons
Ortholog gene name: nikA
Ortholog function: nickel ABC transporter, periplasmic nickel-binding protein
Escherichia coli str. K-12 substr. MG1655 b3476 -65 8 GTATGACGAATACTTAAAATCGTCATAC
Citrobacter koseri ATCC BAA-895 CKO_04926 -207 8 GTATGATGAATCTTTAGAATCGTCATAC
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_03850 -52 8 GTATGATGAATCACTAAAATCGTCATAC
Enterobacter sp. 638 Ent638_1834 -64 7.9 GTATGATGAATTATTAGAATCGTCACAC
Edwardsiella tarda EIB202 ETAE_1379 -59 7.7 GTATGCAGAATTTATAAAATCATCATAC
Position: -171
Score: 5.3
Sequence: GTATGCAGAAGTAAGGAAAAGTGCATAC
Locus tag: ETAE_1580
ETAE_1580 -171 5.3 GTATGCAGAAGTAAGGAAAAGTGCATAC
Supported by regulated orthologs from reference regulons
Ortholog gene name: yntA
Ortholog function: predicted nickel ABC transporter, substrate-binding protein
Salmonella typhimurium LT2 STM1255 -101 6.5 GTATGATGTTTTTAAAAGATCGTCATAC
Edwardsiella tarda EIB202 ETAE_1580 -171 5.3 GTATGCAGAAGTAAGGAAAAGTGCATAC
Position: -120
Score: 6.9
Sequence: GTATGACAATTTCATGAAAAGATCATAC
Locus tag: ETAE_2654
ETAE_2654 -120 6.9 GTATGACAATTTCATGAAAAGATCATAC
Supported by regulated orthologs from reference regulons
Ortholog gene name: nxiA
Ortholog function: high-affinity nickel-transporter
Salmonella typhimurium LT2 STM2783 -79 6.2 GTGTGACGTTTTAATCAAATGATCATAC
Edwardsiella tarda EIB202 ETAE_2654 -120 6.9 GTATGACAATTTCATGAAAAGATCATAC
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