Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of NarP regulog to Salmonella enterica subsp. enterica serovar Newport str. SL254

Reference regulog properties
Source regulog: NarP - Enterobacteriales
Regulator type: Transcription factor
Regulator family: LuxR
Regulation mode: activator (repressor)
Biological process: Nitrate and nitrite respiration
Effector: Nitrate; Nitrite
Phylum: Proteobacteria/gamma
Propagated regulon:
Target genome Salmonella enterica subsp. enterica serovar Newport str. SL254
Orthologous TF(s) SNSL254_A2430
Regulated genes 24
Built upon 125 sites [see more]
Predicted regulatory interactions in Salmonella enterica subsp. enterica serovar Newport str. SL254
Locus tag Position Score Sequence
Position: -131
Score: 4.1
Sequence: TACCCATCATGAGTTA
Locus tag: SNSL254_A0078
SNSL254_A0078 -131 4.1 TACCCATCATGAGTTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: caiT
Ortholog function: L-carnitine/gamma-butyrobetaine antiporter
Salmonella typhimurium LT2 STM0074 -131 4.1 TACCCATCATGAGTTA
Position: -204
Score: 4.5
Sequence: TACCTCTTGGTGGGTA
Locus tag: SNSL254_A0164
SNSL254_A0164 -204 4.5 TACCTCTTGGTGGGTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: pdhR
Ortholog function: Pyruvate utilization transcriptional regulator PdhR, GntR family
Salmonella typhimurium LT2 STM0151 -204 4.3 TACCTCCTGGTGGGTA
Citrobacter koseri ATCC BAA-895 CKO_03260 -204 4.2 TACTCCCAGGGGAGTA
Serratia proteamaculans 568 Spro_4012 -198 4.2 TACCTCGTAAATGGTA
Position: -91
Score: 4.2
Sequence: TAATCGTTAATGGGTA
Locus tag: SNSL254_A0845
SNSL254_A0845 -91 4.2 TAATCGTTAATGGGTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: modA
Ortholog function: Molybdenum ABC transporter, substrate-binding protein (TC 3.A.1.8.1)
Escherichia coli str. K-12 substr. MG1655 b0763 -90 3.9 TACCTCACAAAGGTTA
Salmonella typhimurium LT2 STM0781 -91 4.2 TAATCGTTAATGGGTA
Citrobacter koseri ATCC BAA-895 CKO_02372 -90 4 TAACCTCAATTGGGTA
Position: -143
Score: 4.8
Sequence: TACCTCTTTGGCGGTA
Locus tag: SNSL254_A0972
SNSL254_A0972 -143 4.8 TACCTCTTTGGCGGTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: hcp
Ortholog function: Hydroxylamine reductase (EC 1.7.-.-)
Salmonella typhimurium LT2 STM0937 -143 4.8 TACCTCTTTGGCGGTA
Position: -162
Score: 4.6
Sequence: TACCCTATTAGGGGTA
Locus tag: SNSL254_A0998
SNSL254_A0998 -162 4.6 TACCCTATTAGGGGTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: dmsA
Ortholog function: Dimethyl sulfoxide reductase, chain A (EC 1.8.99.-)
Escherichia coli str. K-12 substr. MG1655 b0894 -180 3.4 TACCGAACAATAATTA
Salmonella typhimurium LT2 STM0964 -161 4.6 TACCCTATTAGGGGTA
Citrobacter koseri ATCC BAA-895 CKO_02177 -166 5.2 TACCCCTTTGGGGGTA
Position: -99
Score: 3.7
Sequence: TAACCAATAAATGGTA
Locus tag: SNSL254_A1376
SNSL254_A1376 -99 3.7 TAACCAATAAATGGTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: yeaR
Ortholog function: Conserved hypothetical protein
Salmonella typhimurium LT2 STM1271 -99 3.7 TAACCAATAAATGGTA
Position: -98
Score: 5
Sequence: TACTCCCAAAGGGGTA
Locus tag: SNSL254_A1610
SNSL254_A1610 -98 5 TACTCCCAAAGGGGTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ynfE
Ortholog function: Dimethyl sulfoxide reductase, chain A (EC 1.8.99.-)
Escherichia coli str. K-12 substr. MG1655 b1587 -92 4.7 TAACCCAAAATGGGTA
Salmonella typhimurium LT2 STM1499 -95 5 TACTCCCAAAGGGGTA
Citrobacter koseri ATCC BAA-895 CKO_01581 -93 4.8 TACCTATAAGGGGTTA
-20 3.8 TAACTATAATGGAGTG
Serratia proteamaculans 568 Spro_1687 -143 4.3 TACCCACTTCTGAGTA
Position: -55
Score: 4.7
Sequence: TACTTCATTGTGGGTA
Locus tag: SNSL254_A1859
SNSL254_A1859 -55 4.7 TACTTCATTGTGGGTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ompW
Ortholog function: Outer membrane protein W precursor
Escherichia coli str. K-12 substr. MG1655 b1256 -55 4.5 TACTCCAATGTAGGTA
Salmonella typhimurium LT2 STM1732 -55 4.7 TACTTCATTGTGGGTA
Citrobacter koseri ATCC BAA-895 CKO_01333 -55 4.5 TACTCCATTGTAGGTA
Yersinia pestis KIM y2044 -43 4.7 TACTCATTTGTAGGTA
Serratia proteamaculans 568 Spro_2674 -28 4.5 TACCCGTAAGTAGGTA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA2303 -56 4.9 TACCTACTTAGGGGTA
Edwardsiella tarda EIB202 ETAE_1528 -52 3.7 TCACTCAATATGGTTA
Proteus mirabilis HI4320 PMI1350 -59 4.9 TACTTATTAATGGGTA
Photorhabdus luminescens subsp. laumondii TTO1 plu2478 -55 3.8 TTCTAATATATGAGTA
Position: -216
Score: 4.6
Sequence: TACTCAGAAGTGAGTA
Locus tag: SNSL254_A1876
SNSL254_A1876 -216 4.6 TACTCAGAAGTGAGTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: adhE
Ortholog function: Alcohol dehydrogenase (EC 1.1.1.1); Acetaldehyde dehydrogenase (EC 1.2.1.10)
Escherichia coli str. K-12 substr. MG1655 b1241 -215 4.7 TACCCAGAAGTGAGTA
Salmonella typhimurium LT2 STM1749 -216 4.6 TACTCAGAAGTGAGTA
Citrobacter koseri ATCC BAA-895 CKO_01318 -216 4.6 TACTCAGAAGTGAGTA
Yersinia pestis KIM y2023 -260 4 TACCTAAGAATAGTTA
Serratia proteamaculans 568 Spro_2704 -252 4 TACCCAAGAGTAGTTA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA2326 -289 4 CACCCACAAATAGGTA
Edwardsiella tarda EIB202 ETAE_1508 -239 4.4 TACCCAAGAATGAGTA
Position: -159
Score: 4.3
Sequence: TCCTCCAAAAGGAGTA
Locus tag: SNSL254_A1895
SNSL254_A1895 -159 4.3 TCCTCCAAAAGGAGTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: narG
Ortholog function: Respiratory nitrate reductase, alpha chain (EC 1.7.99.4)
Escherichia coli str. K-12 substr. MG1655 b1224 -158 4.3 TTATCCTAAAGGGGTA
Salmonella typhimurium LT2 STM1764 -159 4.3 TCCTCCCAAAGGAGTA
Citrobacter koseri ATCC BAA-895 CKO_01301 -158 4.6 TCCTCCTTAAGGGGTA
Position: -236
Score: 4.3
Sequence: TACCCATAACGAGTTA
Locus tag: SNSL254_A1896
SNSL254_A1896 -236 4.3 TACCCATAACGAGTTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: narK
Ortholog function: Nitrate/nitrite antiporter
Escherichia coli str. K-12 substr. MG1655 b1223 -236 4.1 TACCCGGAAAGAGTTA
Salmonella typhimurium LT2 STM1765 -236 4.2 TACCTATAACGAGTTA
-126 4 TACTCATTAAGGGTAA
Citrobacter koseri ATCC BAA-895 CKO_01299 -392 4.2 TACCTATAACGAGTTA
-282 4.5 TACTCACTAAGGGGCA
Position: -230
Score: 4.3
Sequence: TTACCCTTAATGAGTA
Position: -120
Score: 4.6
Sequence: TAACTCGTTATGGGTA
Locus tag: SNSL254_A1897
SNSL254_A1897 -230 4.3 TTACCCTTAATGAGTA
-120 4.6 TAACTCGTTATGGGTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: narX
Ortholog function: Nitrate/nitrite sensor protein NarX (EC 2.7.3.-)
Escherichia coli str. K-12 substr. MG1655 b1222 -228 4 TTACCCATAGTGAGTA
-118 3.8 TAACTCTTTCCGGGTA
Salmonella typhimurium LT2 STM1766 -230 4.3 TTACCCTTAATGAGTA
-120 4.5 TAACTCGTTATAGGTA
Citrobacter koseri ATCC BAA-895 CKO_01297 -249 4.4 TGCCCCTTAGTGAGTA
-139 4.5 TAACTCGTTATAGGTA
Serratia proteamaculans 568 Spro_2899 -138 4.7 TACTTCGTTAGAGGTA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA2029 -217 4.2 CACTCCTTAATGAGTA
-106 4.7 TACTCACTAGTGGGTA
Proteus mirabilis HI4320 PMI3569 -73 4.5 TACTCCCTTTGGAGTA
Position: -132
Score: 4.8
Sequence: TACCTCTATCGGGGTA
Locus tag: SNSL254_A2445
SNSL254_A2445 -132 4.8 TACCTCTATCGGGGTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: napF
Ortholog function: Periplasmic nitrate reductase, ferredoxin-type protein NapF
Escherichia coli str. K-12 substr. MG1655 b2208 -129 4.6 TACCCCGATCGGGGTA
Salmonella typhimurium LT2 STM2261 -132 4.8 TACCTCTATCGGGGTA
Yersinia pestis KIM y1442 -158 4.3 TACTCATTATTCGGTA
Serratia proteamaculans 568 Spro_3488 -322 4.7 TACCCCTTTAGGGGGA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA1898 -111 4.4 TACCTCTAAAGGGTGA
Edwardsiella tarda EIB202 ETAE_1114 -156 3.9 TAACCCAAAAGAGGAA
Position: -104
Score: 4.3
Sequence: TACCTGATAGTGGGTA
Locus tag: SNSL254_A2521
SNSL254_A2521 -104 4.3 TACCTGATAGTGGGTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: yfbV
Ortholog function: Predicted membrane protein
Escherichia coli str. K-12 substr. MG1655 b2295 -104 4.3 TACCTGATAGTGGGTA
Salmonella typhimurium LT2 STM2336 -104 4.3 TACCTGATAGTGGGTA
Citrobacter koseri ATCC BAA-895 CKO_00500 -105 4.3 TACCTGATAGTGGGTA
Position: -22
Score: 4.2
Sequence: TACTTTTCAAGGAGTA
Locus tag: SNSL254_A2666
SNSL254_A2666 -22 4.2 TACTTTTCAAGGAGTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: talA
Ortholog function: Transaldolase (EC 2.2.1.2)
Escherichia coli str. K-12 substr. MG1655 b2464 -22 4.2 TACTTTTCAAGGAGTA
Salmonella typhimurium LT2 STM2473 -22 4.2 TACTTTTCAAGGAGTA
Citrobacter koseri ATCC BAA-895 CKO_00330 -22 4.2 TACTTTTCAAGGAGTA
Position: -48
Score: 4.3
Sequence: TTCCCATAATTGGGTA
Locus tag: SNSL254_A3590
SNSL254_A3590 -48 4.3 TTCCCATAATTGGGTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: arcB
Ortholog function: Aerobic respiration control sensor protein arcB (EC 2.7.3.-)
Escherichia coli str. K-12 substr. MG1655 b3210 -112 4.6 TACCTCCAACGGAGTA
Salmonella typhimurium LT2 STM3328 -48 4.3 TTCCCATAATTGGGTA
Citrobacter koseri ATCC BAA-895 CKO_04614 -49 3.8 TGCTCAGAATTGAGTA
Position: -101
Score: 5
Sequence: TACCCATTAAGAGGTA
Locus tag: SNSL254_A3744
SNSL254_A3744 -101 5 TACCCATTAAGAGGTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: nirB
Ortholog function: Nitrite reductase large subunit (EC 1.7.1.4)
Escherichia coli str. K-12 substr. MG1655 b3365 -101 5.1 TACCCATTAAGGAGTA
Salmonella typhimurium LT2 STM3474 -101 5 TACCCATTAAGAGGTA
Citrobacter koseri ATCC BAA-895 CKO_04789 -101 5.2 TACCTCTTAAGGAGTA
Yersinia pestis KIM y3945 -100 4.5 TACCACCTTAGAGGTA
Serratia proteamaculans 568 Spro_4595 -197 4.5 TACTCCCGAATGGGTA
-101 4.5 TACCACATTAGAGGTA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA4079 -100 4.8 TACCCACAAAGAAGTA
Proteus mirabilis HI4320 PMI1479 -134 4.1 TACTACTTTGGTAGTA
Position: -183
Score: 4.5
Sequence: TACCTCGAAGTGAGCA
Locus tag: SNSL254_A4153
SNSL254_A4153 -183 4.5 TACCTCGAAGTGAGCA
Supported by regulated orthologs from reference regulons
Ortholog gene name: atpI
Ortholog function: ATP synthase maturation
Escherichia coli str. K-12 substr. MG1655 b3739 -31 4.6 TACCTCGAAGGGAGCA
Salmonella typhimurium LT2 STM3872 -30 4.5 TACCTCGAAGTGAGCA
Citrobacter koseri ATCC BAA-895 CKO_00079 -30 4.6 TACCTCGAAGGGAGCA
Serratia proteamaculans 568 Spro_0001 -33 4.6 TACCTCCTCAGGGGTA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA4519 -33 4.3 TACCTCTGAAAAGGTA
Edwardsiella tarda EIB202 ETAE_3526 -156 4.4 TACCTCCTGGGGGGTA
Position: -177
Score: 4.5
Sequence: TAACTCTAAAGTGGTA
Locus tag: SNSL254_A4622
SNSL254_A4622 -177 4.5 TAACTCTAAAGTGGTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: nrfA
Ortholog function: Nitrite reductase, cytochrome c(552)
Escherichia coli str. K-12 substr. MG1655 b4070 -175 4.5 TAACTCTAAAGTGGTA
Salmonella typhimurium LT2 STM4277 -177 4.5 TAACTCTAAAGTGGTA
Citrobacter koseri ATCC BAA-895 CKO_03814 -180 4.5 TAACTCTAAAGTGGTA
Position: -100
Score: 4.7
Sequence: TACCCATAAAGGAGCA
Locus tag: SNSL254_A4704
SNSL254_A4704 -100 4.7 TACCCATAAAGGAGCA
Supported by regulated orthologs from reference regulons
Ortholog gene name: frdA
Ortholog function: Fumarate reductase subunit A (EC 1.3.5.4)
Escherichia coli str. K-12 substr. MG1655 b4154 -101 4.7 TACCTATAAAGGAGCA
Salmonella typhimurium LT2 STM4343 -100 4.7 TACCCATAAAGGAGCA
Citrobacter koseri ATCC BAA-895 CKO_03678 -60 4.7 TACCTATAAAGGAGCA
Position: -78
Score: 3.9
Sequence: CACCCCGAAAGAGTTA
Locus tag: SNSL254_A4762
SNSL254_A4762 -78 3.9 CACCCCGAAAGAGTTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: dnrN
Ortholog function: Nitric oxide-dependent regulator DnrN
Escherichia coli str. K-12 substr. MG1655 b4209 -79 3.7 TGCTACGTAAGGGTTA
Salmonella typhimurium LT2 STM4399 -78 3.9 CACCCCGAAAGAGTTA
Citrobacter koseri ATCC BAA-895 CKO_03623 -78 3.9 TGACCCGAAAGGGTTA
Yersinia pestis KIM y0652 -108 4.4 TACCCACTTGGAGTTA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA3606 -81 4.8 TACCTCGTAAGCGGTA
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