Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of NarP regulog to Klebsiella pneumoniae 342

Reference regulog properties
Source regulog: NarP - Enterobacteriales
Regulator type: Transcription factor
Regulator family: LuxR
Regulation mode: activator (repressor)
Biological process: Nitrate and nitrite respiration
Effector: Nitrate; Nitrite
Phylum: Proteobacteria/gamma
Propagated regulon:
Target genome Klebsiella pneumoniae 342
Orthologous TF(s) No orthologous TFs found
Regulated genes 13
Built upon 125 sites [see more]
Predicted regulatory interactions in Klebsiella pneumoniae 342
Locus tag Position Score Sequence
Position: -101
Score: 4.7
Sequence: TACCCATTAAGTGGTA
Locus tag: KPK_0364
KPK_0364 -101 4.7 TACCCATTAAGTGGTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: nirB
Ortholog function: Nitrite reductase large subunit (EC 1.7.1.4)
Escherichia coli str. K-12 substr. MG1655 b3365 -101 5.1 TACCCATTAAGGAGTA
Salmonella typhimurium LT2 STM3474 -101 5 TACCCATTAAGAGGTA
Citrobacter koseri ATCC BAA-895 CKO_04789 -101 5.2 TACCTCTTAAGGAGTA
Yersinia pestis KIM y3945 -100 4.5 TACCACCTTAGAGGTA
Serratia proteamaculans 568 Spro_4595 -197 4.5 TACTCCCGAATGGGTA
-101 4.5 TACCACATTAGAGGTA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA4079 -100 4.8 TACCCACAAAGAAGTA
Proteus mirabilis HI4320 PMI1479 -134 4.1 TACTACTTTGGTAGTA
Position: -49
Score: 3.8
Sequence: TGCTCAGAATTGAGTA
Locus tag: KPK_0502
KPK_0502 -49 3.8 TGCTCAGAATTGAGTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: arcB
Ortholog function: Aerobic respiration control sensor protein arcB (EC 2.7.3.-)
Escherichia coli str. K-12 substr. MG1655 b3210 -112 4.6 TACCTCCAACGGAGTA
Salmonella typhimurium LT2 STM3328 -48 4.3 TTCCCATAATTGGGTA
Citrobacter koseri ATCC BAA-895 CKO_04614 -49 3.8 TGCTCAGAATTGAGTA
Position: -142
Score: 3.9
Sequence: TAATCCCTGAGAGGTA
Locus tag: KPK_1733
KPK_1733 -142 3.9 TAATCCCTGAGAGGTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: yeaR
Ortholog function: Conserved hypothetical protein
Citrobacter koseri ATCC BAA-895 CKO_01824 -234 3.7 TAACCAATAAATGGTA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA1474 -170 4.2 TAACCACAATTGAGTA
Position: -200
Score: 4.1
Sequence: TGCTCCGAAGTGAGTA
Position: -90
Score: 4.9
Sequence: TAACTCTTTAGGGGTA
Locus tag: KPK_2091
KPK_2091 -200 4.1 TGCTCCGAAGTGAGTA
-90 4.9 TAACTCTTTAGGGGTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: narX
Ortholog function: Nitrate/nitrite sensor protein NarX (EC 2.7.3.-)
Escherichia coli str. K-12 substr. MG1655 b1222 -228 4 TTACCCATAGTGAGTA
-118 3.8 TAACTCTTTCCGGGTA
Salmonella typhimurium LT2 STM1766 -230 4.3 TTACCCTTAATGAGTA
-120 4.5 TAACTCGTTATAGGTA
Citrobacter koseri ATCC BAA-895 CKO_01297 -249 4.4 TGCCCCTTAGTGAGTA
-139 4.5 TAACTCGTTATAGGTA
Serratia proteamaculans 568 Spro_2899 -138 4.7 TACTTCGTTAGAGGTA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA2029 -217 4.2 CACTCCTTAATGAGTA
-106 4.7 TACTCACTAGTGGGTA
Proteus mirabilis HI4320 PMI3569 -73 4.5 TACTCCCTTTGGAGTA
Position: -55
Score: 4.5
Sequence: TAACTCGTTATAGGTA
Locus tag: KPK_3193
KPK_3193 -55 4.5 TAACTCGTTATAGGTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ompW
Ortholog function: Outer membrane protein W precursor
Escherichia coli str. K-12 substr. MG1655 b1256 -55 4.5 TACTCCAATGTAGGTA
Salmonella typhimurium LT2 STM1732 -55 4.7 TACTTCATTGTGGGTA
Citrobacter koseri ATCC BAA-895 CKO_01333 -55 4.5 TACTCCATTGTAGGTA
Yersinia pestis KIM y2044 -43 4.7 TACTCATTTGTAGGTA
Serratia proteamaculans 568 Spro_2674 -28 4.5 TACCCGTAAGTAGGTA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA2303 -56 4.9 TACCTACTTAGGGGTA
Edwardsiella tarda EIB202 ETAE_1528 -52 3.7 TCACTCAATATGGTTA
Proteus mirabilis HI4320 PMI1350 -59 4.9 TACTTATTAATGGGTA
Photorhabdus luminescens subsp. laumondii TTO1 plu2478 -55 3.8 TTCTAATATATGAGTA
Position: -107
Score: 4.2
Sequence: TACTCCCTTTGGATTA
Locus tag: KPK_3634
KPK_3634 -107 4.2 TACTCCCTTTGGATTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: dmsA
Ortholog function: Dimethyl sulfoxide reductase, chain A (EC 1.8.99.-)
Escherichia coli str. K-12 substr. MG1655 b0894 -180 3.4 TACCGAACAATAATTA
Salmonella typhimurium LT2 STM0964 -161 4.6 TACCCTATTAGGGGTA
Citrobacter koseri ATCC BAA-895 CKO_02177 -166 5.2 TACCCCTTTGGGGGTA
Position: -307
Score: 4.3
Sequence: TACCCATGAGTGGTTA
Position: -202
Score: 5
Sequence: TACCCCTTTGTGAGTA
Locus tag: KPK_4622
KPK_4622 -307 4.3 TACCCATGAGTGGTTA
-202 5 TACCCCTTTGTGAGTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: pdhR
Ortholog function: Pyruvate utilization transcriptional regulator PdhR, GntR family
Salmonella typhimurium LT2 STM0151 -204 4.3 TACCTCCTGGTGGGTA
Citrobacter koseri ATCC BAA-895 CKO_03260 -204 4.2 TACTCCCAGGGGAGTA
Serratia proteamaculans 568 Spro_4012 -198 4.2 TACCTCGTAAATGGTA
Position: -78
Score: 3.9
Sequence: GCCTCCTTAAGGGGTA
Locus tag: KPK_5067
KPK_5067 -78 3.9 GCCTCCTTAAGGGGTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: dnrN
Ortholog function: Nitric oxide-dependent regulator DnrN
Escherichia coli str. K-12 substr. MG1655 b4209 -79 3.7 TGCTACGTAAGGGTTA
Salmonella typhimurium LT2 STM4399 -78 3.9 CACCCCGAAAGAGTTA
Citrobacter koseri ATCC BAA-895 CKO_03623 -78 3.9 TGACCCGAAAGGGTTA
Yersinia pestis KIM y0652 -108 4.4 TACCCACTTGGAGTTA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA3606 -81 4.8 TACCTCGTAAGCGGTA
Position: -70
Score: 4.7
Sequence: TACCTATAAAGGAGCA
Locus tag: KPK_5115
KPK_5115 -70 4.7 TACCTATAAAGGAGCA
Supported by regulated orthologs from reference regulons
Ortholog gene name: frdA
Ortholog function: Fumarate reductase subunit A (EC 1.3.5.4)
Escherichia coli str. K-12 substr. MG1655 b4154 -101 4.7 TACCTATAAAGGAGCA
Salmonella typhimurium LT2 STM4343 -100 4.7 TACCCATAAAGGAGCA
Citrobacter koseri ATCC BAA-895 CKO_03678 -60 4.7 TACCTATAAAGGAGCA
Position: -30
Score: 4.5
Sequence: TACCTCAAAGGGAGCA
Locus tag: KPK_5537
KPK_5537 -30 4.5 TACCTCAAAGGGAGCA
Supported by regulated orthologs from reference regulons
Ortholog gene name: atpI
Ortholog function: ATP synthase maturation
Escherichia coli str. K-12 substr. MG1655 b3739 -31 4.6 TACCTCGAAGGGAGCA
Salmonella typhimurium LT2 STM3872 -30 4.5 TACCTCGAAGTGAGCA
Citrobacter koseri ATCC BAA-895 CKO_00079 -30 4.6 TACCTCGAAGGGAGCA
Serratia proteamaculans 568 Spro_0001 -33 4.6 TACCTCCTCAGGGGTA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA4519 -33 4.3 TACCTCTGAAAAGGTA
Edwardsiella tarda EIB202 ETAE_3526 -156 4.4 TACCTCCTGGGGGGTA